data_5DHH # _model_server_result.job_id AbH2UvzeS5RDFMeYUStuBQ _model_server_result.datetime_utc '2024-11-29 15:01:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dhh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":1503}' # _entry.id 5DHH # _exptl.entry_id 5DHH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 418.399 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5S,7S)-7-{[4-(2,6-dichlorophenyl)piperidin-1-yl]methyl}-1-methyl-6,7,8,9-tetrahydro-5H-benzo[7]annulen-5-ol _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.5 _cell.angle_gamma 90 _cell.entry_id 5DHH _cell.length_a 42.3 _cell.length_b 168.941 _cell.length_c 65.472 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DHH _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H 1 1 B,I,J,K,L 2 1 A,C,D,E,F,G,H 3 1 B,I,J,K,L 3 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_556 x,y,z+1 1 0 0 0 1 0 0 0 1 -15.284135 0 63.663003 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 197 A CYS 123 1_555 A SG CYS 274 A CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 B SG CYS 197 B CYS 1187 1_555 B SG CYS 274 B CYS 1264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? # _chem_comp.formula 'C24 H29 Cl2 N O' _chem_comp.formula_weight 418.399 _chem_comp.id DGW _chem_comp.mon_nstd_flag . _chem_comp.name (5S,7S)-7-{[4-(2,6-dichlorophenyl)piperidin-1-yl]methyl}-1-methyl-6,7,8,9-tetrahydro-5H-benzo[7]annulen-5-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CAS DGW sing 83 n n CAG CAS DGW doub 84 n y CAG CAF DGW sing 85 n y CAS CAW DGW sing 86 n y CAF CAJ DGW doub 87 n y CAW CAK DGW sing 88 n n CAW CAV DGW doub 89 n y CAJ CAV DGW sing 90 n y CAK CAL DGW sing 91 n n CAV CAY DGW sing 92 n n CAL CAZ DGW sing 93 n n CAY OAB DGW sing 94 n n CAY CAQ DGW sing 95 n n CAQ CAZ DGW sing 96 n n CAZ CAR DGW sing 97 n n CAR NBB DGW sing 98 n n NBB CAO DGW sing 99 n n NBB CAP DGW sing 100 n n CAO CAM DGW sing 101 n n CAP CAN DGW sing 102 n n CAM CBA DGW sing 103 n n CAN CBA DGW sing 104 n n CBA CAX DGW sing 105 n n CLAD CAU DGW sing 106 n n CAX CAU DGW doub 107 n y CAX CAT DGW sing 108 n y CAU CAI DGW sing 109 n y CLAC CAT DGW sing 110 n n CAT CAH DGW doub 111 n y CAI CAE DGW doub 112 n y CAH CAE DGW sing 113 n y CAH H1 DGW sing 114 n n CAE H2 DGW sing 115 n n CAI H3 DGW sing 116 n n CBA H4 DGW sing 117 n n CAM H5 DGW sing 118 n n CAM H6 DGW sing 119 n n CAO H7 DGW sing 120 n n CAO H8 DGW sing 121 n n CAN H9 DGW sing 122 n n CAN H10 DGW sing 123 n n CAP H11 DGW sing 124 n n CAP H12 DGW sing 125 n n CAR H14 DGW sing 126 n n CAR H15 DGW sing 127 n n CAZ H16 DGW sing 128 n n CAQ H17 DGW sing 129 n n CAQ H18 DGW sing 130 n n CAY H19 DGW sing 131 n n OAB H20 DGW sing 132 n n CAJ H21 DGW sing 133 n n CAF H22 DGW sing 134 n n CAG H23 DGW sing 135 n n CAA H24 DGW sing 136 n n CAA H25 DGW sing 137 n n CAA H26 DGW sing 138 n n CAK H27 DGW sing 139 n n CAK H28 DGW sing 140 n n CAL H29 DGW sing 141 n n CAL H30 DGW sing 142 n n # _atom_sites.entry_id 5DHH _atom_sites.fract_transf_matrix[1][1] 0.023641 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005675 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005919 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015708 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 OLA A 1 1201 4 OLA OLA . D 2 OLA A 1 1202 5 OLA OLA . E 2 OLA A 1 1203 6 OLA OLA . F 2 OLA A 1 1204 9 OLA OLA . G 2 OLA A 1 1205 10 OLA OLA . H 3 DGW A 1 1206 2 DGW DGW . I 2 OLA B 1 1501 8 OLA OLA . J 2 OLA B 1 1502 11 OLA OLA . K 3 DGW B 1 1503 1 DGW DGW . L 4 OLC B 1 1504 1 OLC OLC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CL CLAC DGW . . . K 3 -17.43 42.345 -42.58 1 116.78 ? CLAC DGW 1503 B 1 HETATM 2 C CAT DGW . . . K 3 -15.712 42.351 -42.764 1 101.59 ? CAT DGW 1503 B 1 HETATM 3 C CAH DGW . . . K 3 -15.157 41.981 -43.981 1 86.93 ? CAH DGW 1503 B 1 HETATM 4 C CAE DGW . . . K 3 -13.781 41.978 -44.144 1 85.77 ? CAE DGW 1503 B 1 HETATM 5 C CAI DGW . . . K 3 -12.964 42.349 -43.089 1 97.22 ? CAI DGW 1503 B 1 HETATM 6 C CAU DGW . . . K 3 -13.5 42.723 -41.865 1 118.79 ? CAU DGW 1503 B 1 HETATM 7 CL CLAD DGW . . . K 3 -12.324 43.162 -40.623 1 150.33 ? CLAD DGW 1503 B 1 HETATM 8 C CAX DGW . . . K 3 -14.899 42.74 -41.703 1 94.59 ? CAX DGW 1503 B 1 HETATM 9 C CBA DGW . . . K 3 -15.534 43.073 -40.498 1 70.83 ? CBA DGW 1503 B 1 HETATM 10 C CAM DGW . . . K 3 -15.225 42.063 -39.451 1 61.52 ? CAM DGW 1503 B 1 HETATM 11 C CAO DGW . . . K 3 -15.91 42.415 -38.153 1 53.39 ? CAO DGW 1503 B 1 HETATM 12 C CAN DGW . . . K 3 -15.138 44.47 -39.995 1 49.67 ? CAN DGW 1503 B 1 HETATM 13 C CAP DGW . . . K 3 -15.859 44.751 -38.684 1 47.22 ? CAP DGW 1503 B 1 HETATM 14 N NBB DGW . . . K 3 -15.467 43.731 -37.679 1 49.6 ? NBB DGW 1503 B 1 HETATM 15 C CAR DGW . . . K 3 -16.156 43.979 -36.404 1 48.38 ? CAR DGW 1503 B 1 HETATM 16 C CAZ DGW . . . K 3 -15.852 45.32 -35.736 1 52.94 ? CAZ DGW 1503 B 1 HETATM 17 C CAQ DGW . . . K 3 -14.341 45.393 -35.67 1 60.82 ? CAQ DGW 1503 B 1 HETATM 18 C CAY DGW . . . K 3 -13.702 46.634 -35.049 1 65.7 ? CAY DGW 1503 B 1 HETATM 19 O OAB DGW . . . K 3 -12.275 46.607 -35.239 1 64.78 ? OAB DGW 1503 B 1 HETATM 20 C CAV DGW . . . K 3 -14.041 46.874 -33.712 1 63.65 ? CAV DGW 1503 B 1 HETATM 21 C CAJ DGW . . . K 3 -12.891 47.286 -33.05 1 66.14 ? CAJ DGW 1503 B 1 HETATM 22 C CAF DGW . . . K 3 -12.913 47.591 -31.698 1 62.33 ? CAF DGW 1503 B 1 HETATM 23 C CAG DGW . . . K 3 -14.102 47.481 -30.988 1 58.75 ? CAG DGW 1503 B 1 HETATM 24 C CAS DGW . . . K 3 -15.261 47.066 -31.635 1 61.96 ? CAS DGW 1503 B 1 HETATM 25 C CAA DGW . . . K 3 -16.448 46.964 -30.898 1 67.89 ? CAA DGW 1503 B 1 HETATM 26 C CAW DGW . . . K 3 -15.233 46.757 -33.002 1 60.14 ? CAW DGW 1503 B 1 HETATM 27 C CAK DGW . . . K 3 -16.497 46.371 -33.43 1 62.18 ? CAK DGW 1503 B 1 HETATM 28 C CAL DGW . . . K 3 -16.569 45.2 -34.393 1 61.24 ? CAL DGW 1503 B 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 504 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #