data_5DHH # _model_server_result.job_id bfXmWh_raAV4m9qDKejLdg _model_server_result.datetime_utc '2024-11-29 14:25:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dhh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":1504}' # _entry.id 5DHH # _exptl.entry_id 5DHH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.5 _cell.angle_gamma 90 _cell.entry_id 5DHH _cell.length_a 42.3 _cell.length_b 168.941 _cell.length_c 65.472 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DHH _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H 1 1 B,I,J,K,L 2 1 A,C,D,E,F,G,H 3 1 B,I,J,K,L 3 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_556 x,y,z+1 1 0 0 0 1 0 0 0 1 -15.284135 0 63.663003 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 197 A CYS 123 1_555 A SG CYS 274 A CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 B SG CYS 197 B CYS 1187 1_555 B SG CYS 274 B CYS 1264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 348 n n C10 C9 OLC doub 349 n n C10 C11 OLC sing 350 n n C9 C8 OLC sing 351 n n C17 C16 OLC sing 352 z n C11 C12 OLC sing 353 n n C8 C7 OLC sing 354 n n C24 C22 OLC sing 355 n n C24 O25 OLC sing 356 n n C16 C15 OLC sing 357 n n C12 C13 OLC sing 358 n n C7 C6 OLC sing 359 n n C15 C14 OLC sing 360 n n C13 C14 OLC sing 361 n n C6 C5 OLC sing 362 n n C5 C4 OLC sing 363 n n C4 C3 OLC sing 364 n n C3 C2 OLC sing 365 n n C2 C1 OLC sing 366 n n C21 C22 OLC sing 367 n n C21 O20 OLC sing 368 n n C1 O19 OLC doub 369 n n C1 O20 OLC sing 370 n n C22 O23 OLC sing 371 n n C18 H18 OLC sing 372 n n C18 H18A OLC sing 373 n n C18 H18B OLC sing 374 n n C10 H10 OLC sing 375 n n C9 H9 OLC sing 376 n n C17 H17 OLC sing 377 n n C17 H17A OLC sing 378 n n C11 H11 OLC sing 379 n n C11 H11A OLC sing 380 n n C8 H8 OLC sing 381 n n C8 H8A OLC sing 382 n n C24 H24 OLC sing 383 n n C24 H24A OLC sing 384 n n C16 H16 OLC sing 385 n n C16 H16A OLC sing 386 n n C12 H12 OLC sing 387 n n C12 H12A OLC sing 388 n n C7 H7 OLC sing 389 n n C7 H7A OLC sing 390 n n C15 H15 OLC sing 391 n n C15 H15A OLC sing 392 n n C13 H13 OLC sing 393 n n C13 H13A OLC sing 394 n n C6 H6 OLC sing 395 n n C6 H6A OLC sing 396 n n C14 H14 OLC sing 397 n n C14 H14A OLC sing 398 n n C5 H5 OLC sing 399 n n C5 H5A OLC sing 400 n n C4 H4 OLC sing 401 n n C4 H4A OLC sing 402 n n C3 H3 OLC sing 403 n n C3 H3A OLC sing 404 n n C2 H2 OLC sing 405 n n C2 H2A OLC sing 406 n n C21 H21 OLC sing 407 n n C21 H21A OLC sing 408 n n C22 H22 OLC sing 409 n n O25 HO25 OLC sing 410 n n O23 HO23 OLC sing 411 n n # _atom_sites.entry_id 5DHH _atom_sites.fract_transf_matrix[1][1] 0.023641 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005675 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005919 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015708 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 OLA A 1 1201 4 OLA OLA . D 2 OLA A 1 1202 5 OLA OLA . E 2 OLA A 1 1203 6 OLA OLA . F 2 OLA A 1 1204 9 OLA OLA . G 2 OLA A 1 1205 10 OLA OLA . H 3 DGW A 1 1206 2 DGW DGW . I 2 OLA B 1 1501 8 OLA OLA . J 2 OLA B 1 1502 11 OLA OLA . K 3 DGW B 1 1503 1 DGW DGW . L 4 OLC B 1 1504 1 OLC OLC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C24 OLC . . . L 4 -3.437 19.853 -51.149 1 59.92 ? C24 OLC 1504 B 1 HETATM 2 C C5 OLC . . . L 4 -4.499 27.44 -52.792 1 42.75 ? C5 OLC 1504 B 1 HETATM 3 C C4 OLC . . . L 4 -3.908 26.073 -53.129 1 50.4 ? C4 OLC 1504 B 1 HETATM 4 C C3 OLC . . . L 4 -4.874 25.006 -52.628 1 54.62 ? C3 OLC 1504 B 1 HETATM 5 C C2 OLC . . . L 4 -4.318 23.601 -52.865 1 59.62 ? C2 OLC 1504 B 1 HETATM 6 C C21 OLC . . . L 4 -5.848 20.306 -51.515 1 60.58 ? C21 OLC 1504 B 1 HETATM 7 C C1 OLC . . . L 4 -5.257 22.607 -52.214 1 66.01 ? C1 OLC 1504 B 1 HETATM 8 C C22 OLC . . . L 4 -4.848 19.467 -50.723 1 56.02 ? C22 OLC 1504 B 1 HETATM 9 O O19 OLC . . . L 4 -6.147 23.015 -51.491 1 69.62 ? O19 OLC 1504 B 1 HETATM 10 O O25 OLC . . . L 4 -2.49 19.068 -50.419 1 62.39 ? O25 OLC 1504 B 1 HETATM 11 O O23 OLC . . . L 4 -4.997 19.726 -49.322 1 49.9 ? O23 OLC 1504 B 1 HETATM 12 O O20 OLC . . . L 4 -5.129 21.172 -52.398 1 65.24 ? O20 OLC 1504 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #