data_5DHI # _model_server_result.job_id 8uuZRz3mspftyeraFLj1Hw _model_server_result.datetime_utc '2025-03-06 09:01:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dhi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 5DHI # _exptl.entry_id 5DHI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5DHI _cell.length_a 126.29 _cell.length_b 126.29 _cell.length_c 123.42 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DHI _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 289 A ASP 301 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? metalc ? metalc2 A OD2 ASP 289 A ASP 301 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.992 ? metalc ? metalc3 A OD1 ASP 289 A ASP 301 1_555 D MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc4 A OD1 ASP 432 A ASP 444 1_555 B MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc5 B MG MG . A MG 601 1_555 E O HOH . A HOH 719 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc6 B MG MG . A MG 601 1_555 E O HOH . A HOH 923 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc7 B MG MG . A MG 601 1_555 E O HOH . A HOH 927 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5DHI _atom_sites.fract_transf_matrix[1][1] 0.007918 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007918 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008102 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 601 1 MG MG . C 2 MG A 1 602 2 MG MG . D 2 MG A 1 603 3 MG MG . E 3 HOH A 1 701 163 HOH HOH . E 3 HOH A 2 702 215 HOH HOH . E 3 HOH A 3 703 1 HOH HOH . E 3 HOH A 4 704 39 HOH HOH . E 3 HOH A 5 705 245 HOH HOH . E 3 HOH A 6 706 173 HOH HOH . E 3 HOH A 7 707 109 HOH HOH . E 3 HOH A 8 708 18 HOH HOH . E 3 HOH A 9 709 129 HOH HOH . E 3 HOH A 10 710 133 HOH HOH . E 3 HOH A 11 711 86 HOH HOH . E 3 HOH A 12 712 66 HOH HOH . E 3 HOH A 13 713 147 HOH HOH . E 3 HOH A 14 714 145 HOH HOH . E 3 HOH A 15 715 88 HOH HOH . E 3 HOH A 16 716 83 HOH HOH . E 3 HOH A 17 717 85 HOH HOH . E 3 HOH A 18 718 21 HOH HOH . E 3 HOH A 19 719 160 HOH HOH . E 3 HOH A 20 720 130 HOH HOH . E 3 HOH A 21 721 132 HOH HOH . E 3 HOH A 22 722 75 HOH HOH . E 3 HOH A 23 723 139 HOH HOH . E 3 HOH A 24 724 131 HOH HOH . E 3 HOH A 25 725 261 HOH HOH . E 3 HOH A 26 726 188 HOH HOH . E 3 HOH A 27 727 232 HOH HOH . E 3 HOH A 28 728 93 HOH HOH . E 3 HOH A 29 729 125 HOH HOH . E 3 HOH A 30 730 37 HOH HOH . E 3 HOH A 31 731 63 HOH HOH . E 3 HOH A 32 732 52 HOH HOH . E 3 HOH A 33 733 11 HOH HOH . E 3 HOH A 34 734 177 HOH HOH . E 3 HOH A 35 735 2 HOH HOH . E 3 HOH A 36 736 30 HOH HOH . E 3 HOH A 37 737 116 HOH HOH . E 3 HOH A 38 738 12 HOH HOH . E 3 HOH A 39 739 210 HOH HOH . E 3 HOH A 40 740 162 HOH HOH . E 3 HOH A 41 741 218 HOH HOH . E 3 HOH A 42 742 247 HOH HOH . E 3 HOH A 43 743 56 HOH HOH . E 3 HOH A 44 744 124 HOH HOH . E 3 HOH A 45 745 36 HOH HOH . E 3 HOH A 46 746 178 HOH HOH . E 3 HOH A 47 747 64 HOH HOH . E 3 HOH A 48 748 15 HOH HOH . E 3 HOH A 49 749 192 HOH HOH . E 3 HOH A 50 750 251 HOH HOH . E 3 HOH A 51 751 9 HOH HOH . E 3 HOH A 52 752 269 HOH HOH . E 3 HOH A 53 753 22 HOH HOH . E 3 HOH A 54 754 4 HOH HOH . E 3 HOH A 55 755 67 HOH HOH . E 3 HOH A 56 756 220 HOH HOH . E 3 HOH A 57 757 197 HOH HOH . E 3 HOH A 58 758 242 HOH HOH . E 3 HOH A 59 759 104 HOH HOH . E 3 HOH A 60 760 84 HOH HOH . E 3 HOH A 61 761 10 HOH HOH . E 3 HOH A 62 762 34 HOH HOH . E 3 HOH A 63 763 148 HOH HOH . E 3 HOH A 64 764 222 HOH HOH . E 3 HOH A 65 765 68 HOH HOH . E 3 HOH A 66 766 49 HOH HOH . E 3 HOH A 67 767 62 HOH HOH . E 3 HOH A 68 768 98 HOH HOH . E 3 HOH A 69 769 40 HOH HOH . E 3 HOH A 70 770 47 HOH HOH . E 3 HOH A 71 771 54 HOH HOH . E 3 HOH A 72 772 152 HOH HOH . E 3 HOH A 73 773 186 HOH HOH . E 3 HOH A 74 774 72 HOH HOH . E 3 HOH A 75 775 24 HOH HOH . E 3 HOH A 76 776 257 HOH HOH . E 3 HOH A 77 777 135 HOH HOH . E 3 HOH A 78 778 89 HOH HOH . E 3 HOH A 79 779 121 HOH HOH . E 3 HOH A 80 780 51 HOH HOH . E 3 HOH A 81 781 41 HOH HOH . E 3 HOH A 82 782 20 HOH HOH . E 3 HOH A 83 783 211 HOH HOH . E 3 HOH A 84 784 128 HOH HOH . E 3 HOH A 85 785 127 HOH HOH . E 3 HOH A 86 786 249 HOH HOH . E 3 HOH A 87 787 265 HOH HOH . E 3 HOH A 88 788 137 HOH HOH . E 3 HOH A 89 789 184 HOH HOH . E 3 HOH A 90 790 44 HOH HOH . E 3 HOH A 91 791 82 HOH HOH . E 3 HOH A 92 792 134 HOH HOH . E 3 HOH A 93 793 59 HOH HOH . E 3 HOH A 94 794 243 HOH HOH . E 3 HOH A 95 795 29 HOH HOH . E 3 HOH A 96 796 236 HOH HOH . E 3 HOH A 97 797 13 HOH HOH . E 3 HOH A 98 798 61 HOH HOH . E 3 HOH A 99 799 149 HOH HOH . E 3 HOH A 100 800 19 HOH HOH . E 3 HOH A 101 801 157 HOH HOH . E 3 HOH A 102 802 78 HOH HOH . E 3 HOH A 103 803 168 HOH HOH . E 3 HOH A 104 804 7 HOH HOH . E 3 HOH A 105 805 14 HOH HOH . E 3 HOH A 106 806 31 HOH HOH . E 3 HOH A 107 807 23 HOH HOH . E 3 HOH A 108 808 96 HOH HOH . E 3 HOH A 109 809 38 HOH HOH . E 3 HOH A 110 810 80 HOH HOH . E 3 HOH A 111 811 28 HOH HOH . E 3 HOH A 112 812 58 HOH HOH . E 3 HOH A 113 813 176 HOH HOH . E 3 HOH A 114 814 71 HOH HOH . E 3 HOH A 115 815 204 HOH HOH . E 3 HOH A 116 816 240 HOH HOH . E 3 HOH A 117 817 73 HOH HOH . E 3 HOH A 118 818 27 HOH HOH . E 3 HOH A 119 819 202 HOH HOH . E 3 HOH A 120 820 256 HOH HOH . E 3 HOH A 121 821 237 HOH HOH . E 3 HOH A 122 822 170 HOH HOH . E 3 HOH A 123 823 8 HOH HOH . E 3 HOH A 124 824 35 HOH HOH . E 3 HOH A 125 825 255 HOH HOH . E 3 HOH A 126 826 155 HOH HOH . E 3 HOH A 127 827 70 HOH HOH . E 3 HOH A 128 828 241 HOH HOH . E 3 HOH A 129 829 244 HOH HOH . E 3 HOH A 130 830 158 HOH HOH . E 3 HOH A 131 831 138 HOH HOH . E 3 HOH A 132 832 154 HOH HOH . E 3 HOH A 133 833 263 HOH HOH . E 3 HOH A 134 834 5 HOH HOH . E 3 HOH A 135 835 270 HOH HOH . E 3 HOH A 136 836 200 HOH HOH . E 3 HOH A 137 837 151 HOH HOH . E 3 HOH A 138 838 42 HOH HOH . E 3 HOH A 139 839 120 HOH HOH . E 3 HOH A 140 840 33 HOH HOH . E 3 HOH A 141 841 3 HOH HOH . E 3 HOH A 142 842 87 HOH HOH . E 3 HOH A 143 843 226 HOH HOH . E 3 HOH A 144 844 95 HOH HOH . E 3 HOH A 145 845 101 HOH HOH . E 3 HOH A 146 846 69 HOH HOH . E 3 HOH A 147 847 164 HOH HOH . E 3 HOH A 148 848 16 HOH HOH . E 3 HOH A 149 849 230 HOH HOH . E 3 HOH A 150 850 94 HOH HOH . E 3 HOH A 151 851 113 HOH HOH . E 3 HOH A 152 852 250 HOH HOH . E 3 HOH A 153 853 91 HOH HOH . E 3 HOH A 154 854 17 HOH HOH . E 3 HOH A 155 855 144 HOH HOH . E 3 HOH A 156 856 43 HOH HOH . E 3 HOH A 157 857 46 HOH HOH . E 3 HOH A 158 858 195 HOH HOH . E 3 HOH A 159 859 166 HOH HOH . E 3 HOH A 160 860 107 HOH HOH . E 3 HOH A 161 861 106 HOH HOH . E 3 HOH A 162 862 118 HOH HOH . E 3 HOH A 163 863 248 HOH HOH . E 3 HOH A 164 864 103 HOH HOH . E 3 HOH A 165 865 45 HOH HOH . E 3 HOH A 166 866 6 HOH HOH . E 3 HOH A 167 867 239 HOH HOH . E 3 HOH A 168 868 50 HOH HOH . E 3 HOH A 169 869 180 HOH HOH . E 3 HOH A 170 870 74 HOH HOH . E 3 HOH A 171 871 25 HOH HOH . E 3 HOH A 172 872 102 HOH HOH . E 3 HOH A 173 873 77 HOH HOH . E 3 HOH A 174 874 172 HOH HOH . E 3 HOH A 175 875 266 HOH HOH . E 3 HOH A 176 876 60 HOH HOH . E 3 HOH A 177 877 221 HOH HOH . E 3 HOH A 178 878 203 HOH HOH . E 3 HOH A 179 879 76 HOH HOH . E 3 HOH A 180 880 174 HOH HOH . E 3 HOH A 181 881 146 HOH HOH . E 3 HOH A 182 882 57 HOH HOH . E 3 HOH A 183 883 65 HOH HOH . E 3 HOH A 184 884 190 HOH HOH . E 3 HOH A 185 885 32 HOH HOH . E 3 HOH A 186 886 212 HOH HOH . E 3 HOH A 187 887 136 HOH HOH . E 3 HOH A 188 888 246 HOH HOH . E 3 HOH A 189 889 273 HOH HOH . E 3 HOH A 190 890 224 HOH HOH . E 3 HOH A 191 891 110 HOH HOH . E 3 HOH A 192 892 90 HOH HOH . E 3 HOH A 193 893 126 HOH HOH . E 3 HOH A 194 894 198 HOH HOH . E 3 HOH A 195 895 79 HOH HOH . E 3 HOH A 196 896 196 HOH HOH . E 3 HOH A 197 897 193 HOH HOH . E 3 HOH A 198 898 112 HOH HOH . E 3 HOH A 199 899 123 HOH HOH . E 3 HOH A 200 900 217 HOH HOH . E 3 HOH A 201 901 258 HOH HOH . E 3 HOH A 202 902 235 HOH HOH . E 3 HOH A 203 903 142 HOH HOH . E 3 HOH A 204 904 169 HOH HOH . E 3 HOH A 205 905 140 HOH HOH . E 3 HOH A 206 906 234 HOH HOH . E 3 HOH A 207 907 208 HOH HOH . E 3 HOH A 208 908 114 HOH HOH . E 3 HOH A 209 909 150 HOH HOH . E 3 HOH A 210 910 199 HOH HOH . E 3 HOH A 211 911 171 HOH HOH . E 3 HOH A 212 912 213 HOH HOH . E 3 HOH A 213 913 233 HOH HOH . E 3 HOH A 214 914 55 HOH HOH . E 3 HOH A 215 915 189 HOH HOH . E 3 HOH A 216 916 26 HOH HOH . E 3 HOH A 217 917 99 HOH HOH . E 3 HOH A 218 918 223 HOH HOH . E 3 HOH A 219 919 122 HOH HOH . E 3 HOH A 220 920 205 HOH HOH . E 3 HOH A 221 921 117 HOH HOH . E 3 HOH A 222 922 231 HOH HOH . E 3 HOH A 223 923 161 HOH HOH . E 3 HOH A 224 924 268 HOH HOH . E 3 HOH A 225 925 141 HOH HOH . E 3 HOH A 226 926 259 HOH HOH . E 3 HOH A 227 927 159 HOH HOH . E 3 HOH A 228 928 167 HOH HOH . E 3 HOH A 229 929 272 HOH HOH . E 3 HOH A 230 930 209 HOH HOH . E 3 HOH A 231 931 264 HOH HOH . E 3 HOH A 232 932 153 HOH HOH . E 3 HOH A 233 933 260 HOH HOH . E 3 HOH A 234 934 238 HOH HOH . E 3 HOH A 235 935 214 HOH HOH . E 3 HOH A 236 936 225 HOH HOH . E 3 HOH A 237 937 81 HOH HOH . E 3 HOH A 238 938 187 HOH HOH . E 3 HOH A 239 939 207 HOH HOH . E 3 HOH A 240 940 165 HOH HOH . E 3 HOH A 241 941 201 HOH HOH . E 3 HOH A 242 942 219 HOH HOH . E 3 HOH A 243 943 228 HOH HOH . E 3 HOH A 244 944 97 HOH HOH . E 3 HOH A 245 945 271 HOH HOH . E 3 HOH A 246 946 267 HOH HOH . E 3 HOH A 247 947 262 HOH HOH . E 3 HOH A 248 948 185 HOH HOH . E 3 HOH A 249 949 216 HOH HOH . E 3 HOH A 250 950 191 HOH HOH . E 3 HOH A 251 951 175 HOH HOH . E 3 HOH A 252 952 206 HOH HOH . E 3 HOH A 253 953 143 HOH HOH . E 3 HOH A 254 954 182 HOH HOH . E 3 HOH A 255 955 100 HOH HOH . E 3 HOH A 256 956 92 HOH HOH . E 3 HOH A 257 957 253 HOH HOH . E 3 HOH A 258 958 252 HOH HOH . E 3 HOH A 259 959 105 HOH HOH . E 3 HOH A 260 960 108 HOH HOH . E 3 HOH A 261 961 48 HOH HOH . E 3 HOH A 262 962 181 HOH HOH . E 3 HOH A 263 963 227 HOH HOH . E 3 HOH A 264 964 194 HOH HOH . E 3 HOH A 265 965 115 HOH HOH . E 3 HOH A 266 966 111 HOH HOH . E 3 HOH A 267 967 179 HOH HOH . E 3 HOH A 268 968 119 HOH HOH . E 3 HOH A 269 969 53 HOH HOH . E 3 HOH A 270 970 254 HOH HOH . E 3 HOH A 271 971 274 HOH HOH . E 3 HOH A 272 972 183 HOH HOH . E 3 HOH A 273 973 229 HOH HOH . E 3 HOH A 274 974 156 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 86.225 _atom_site.Cartn_y 19.316 _atom_site.Cartn_z 49.661 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 60.2 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 603 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #