data_5DHP # _model_server_result.job_id KOa_J7M68-pHHBM4xtJj3g _model_server_result.datetime_utc '2025-01-10 14:00:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dhp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":301}' # _entry.id 5DHP # _exptl.entry_id 5DHP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.28 _cell.angle_gamma 90 _cell.entry_id 5DHP _cell.length_a 66.93 _cell.length_b 119.53 _cell.length_c 67.31 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DHP _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 H N N ? 2 K N N # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 129 n n C1 O2 CIT sing 130 n n C1 C2 CIT sing 131 n n O2 HO2 CIT sing 132 n n C2 C3 CIT sing 133 n n C2 H21 CIT sing 134 n n C2 H22 CIT sing 135 n n C3 O7 CIT sing 136 n n C3 C4 CIT sing 137 n n C3 C6 CIT sing 138 n n O7 HO7 CIT sing 139 n n C4 C5 CIT sing 140 n n C4 H41 CIT sing 141 n n C4 H42 CIT sing 142 n n C5 O3 CIT doub 143 n n C5 O4 CIT sing 144 n n O4 HO4 CIT sing 145 n n C6 O5 CIT doub 146 n n C6 O6 CIT sing 147 n n O6 HO6 CIT sing 148 n n # _atom_sites.entry_id 5DHP _atom_sites.fract_transf_matrix[1][1] 0.014941 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00271 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008366 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015099 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 CIT A 1 301 3 CIT CIT . F 3 GOL A 1 302 1 GOL GOL . G 4 5AQ A 1 303 1 5AQ PDB . H 2 CIT B 1 301 2 CIT CIT . I 4 5AQ B 1 302 1 5AQ PDB . J 4 5AQ C 1 301 1 5AQ PDB . K 2 CIT D 1 301 1 CIT CIT . L 4 5AQ D 1 302 1 5AQ PDB . M 5 HOH A 1 401 32 HOH HOH . M 5 HOH A 2 402 78 HOH HOH . M 5 HOH A 3 403 59 HOH HOH . M 5 HOH A 4 404 101 HOH HOH . M 5 HOH A 5 405 86 HOH HOH . M 5 HOH A 6 406 115 HOH HOH . M 5 HOH A 7 407 9 HOH HOH . M 5 HOH A 8 408 179 HOH HOH . M 5 HOH A 9 409 90 HOH HOH . M 5 HOH A 10 410 255 HOH HOH . M 5 HOH A 11 411 116 HOH HOH . M 5 HOH A 12 412 87 HOH HOH . M 5 HOH A 13 413 62 HOH HOH . M 5 HOH A 14 414 5 HOH HOH . M 5 HOH A 15 415 51 HOH HOH . M 5 HOH A 16 416 254 HOH HOH . M 5 HOH A 17 417 91 HOH HOH . M 5 HOH A 18 418 84 HOH HOH . M 5 HOH A 19 419 20 HOH HOH . M 5 HOH A 20 420 54 HOH HOH . M 5 HOH A 21 421 129 HOH HOH . M 5 HOH A 22 422 1 HOH HOH . M 5 HOH A 23 423 105 HOH HOH . M 5 HOH A 24 424 153 HOH HOH . M 5 HOH A 25 425 58 HOH HOH . M 5 HOH A 26 426 122 HOH HOH . M 5 HOH A 27 427 95 HOH HOH . M 5 HOH A 28 428 81 HOH HOH . M 5 HOH A 29 429 93 HOH HOH . M 5 HOH A 30 430 10 HOH HOH . M 5 HOH A 31 431 11 HOH HOH . M 5 HOH A 32 432 172 HOH HOH . M 5 HOH A 33 433 61 HOH HOH . M 5 HOH A 34 434 6 HOH HOH . M 5 HOH A 35 435 73 HOH HOH . M 5 HOH A 36 436 125 HOH HOH . M 5 HOH A 37 437 128 HOH HOH . M 5 HOH A 38 438 14 HOH HOH . M 5 HOH A 39 439 237 HOH HOH . M 5 HOH A 40 440 72 HOH HOH . M 5 HOH A 41 441 167 HOH HOH . M 5 HOH A 42 442 45 HOH HOH . M 5 HOH A 43 443 22 HOH HOH . M 5 HOH A 44 444 163 HOH HOH . M 5 HOH A 45 445 203 HOH HOH . M 5 HOH A 46 446 111 HOH HOH . M 5 HOH A 47 447 282 HOH HOH . M 5 HOH A 48 448 214 HOH HOH . M 5 HOH A 49 449 39 HOH HOH . M 5 HOH A 50 450 4 HOH HOH . M 5 HOH A 51 451 70 HOH HOH . M 5 HOH A 52 452 232 HOH HOH . M 5 HOH A 53 453 76 HOH HOH . M 5 HOH A 54 454 135 HOH HOH . M 5 HOH A 55 455 177 HOH HOH . M 5 HOH A 56 456 140 HOH HOH . M 5 HOH A 57 457 34 HOH HOH . M 5 HOH A 58 458 75 HOH HOH . M 5 HOH A 59 459 239 HOH HOH . M 5 HOH A 60 460 202 HOH HOH . M 5 HOH A 61 461 262 HOH HOH . M 5 HOH A 62 462 66 HOH HOH . M 5 HOH A 63 463 161 HOH HOH . M 5 HOH A 64 464 215 HOH HOH . M 5 HOH A 65 465 47 HOH HOH . M 5 HOH A 66 466 29 HOH HOH . M 5 HOH A 67 467 89 HOH HOH . M 5 HOH A 68 468 216 HOH HOH . M 5 HOH A 69 469 23 HOH HOH . M 5 HOH A 70 470 235 HOH HOH . M 5 HOH A 71 471 236 HOH HOH . M 5 HOH A 72 472 205 HOH HOH . M 5 HOH A 73 473 264 HOH HOH . M 5 HOH A 74 474 164 HOH HOH . M 5 HOH A 75 475 193 HOH HOH . M 5 HOH A 76 476 17 HOH HOH . M 5 HOH A 77 477 201 HOH HOH . M 5 HOH A 78 478 253 HOH HOH . M 5 HOH A 79 479 220 HOH HOH . M 5 HOH A 80 480 134 HOH HOH . M 5 HOH A 81 481 211 HOH HOH . M 5 HOH A 82 482 288 HOH HOH . M 5 HOH A 83 483 274 HOH HOH . M 5 HOH A 84 484 204 HOH HOH . M 5 HOH A 85 485 182 HOH HOH . M 5 HOH A 86 486 244 HOH HOH . N 5 HOH B 1 401 113 HOH HOH . N 5 HOH B 2 402 15 HOH HOH . N 5 HOH B 3 403 210 HOH HOH . N 5 HOH B 4 404 136 HOH HOH . N 5 HOH B 5 405 3 HOH HOH . N 5 HOH B 6 406 265 HOH HOH . N 5 HOH B 7 407 40 HOH HOH . N 5 HOH B 8 408 117 HOH HOH . N 5 HOH B 9 409 158 HOH HOH . N 5 HOH B 10 410 83 HOH HOH . N 5 HOH B 11 411 145 HOH HOH . N 5 HOH B 12 412 27 HOH HOH . N 5 HOH B 13 413 178 HOH HOH . N 5 HOH B 14 414 242 HOH HOH . N 5 HOH B 15 415 238 HOH HOH . N 5 HOH B 16 416 60 HOH HOH . N 5 HOH B 17 417 44 HOH HOH . N 5 HOH B 18 418 71 HOH HOH . N 5 HOH B 19 419 38 HOH HOH . N 5 HOH B 20 420 30 HOH HOH . N 5 HOH B 21 421 160 HOH HOH . N 5 HOH B 22 422 92 HOH HOH . N 5 HOH B 23 423 79 HOH HOH . N 5 HOH B 24 424 119 HOH HOH . N 5 HOH B 25 425 224 HOH HOH . N 5 HOH B 26 426 82 HOH HOH . N 5 HOH B 27 427 109 HOH HOH . N 5 HOH B 28 428 137 HOH HOH . N 5 HOH B 29 429 55 HOH HOH . N 5 HOH B 30 430 130 HOH HOH . N 5 HOH B 31 431 223 HOH HOH . N 5 HOH B 32 432 279 HOH HOH . N 5 HOH B 33 433 281 HOH HOH . N 5 HOH B 34 434 110 HOH HOH . N 5 HOH B 35 435 131 HOH HOH . N 5 HOH B 36 436 266 HOH HOH . N 5 HOH B 37 437 168 HOH HOH . N 5 HOH B 38 438 187 HOH HOH . N 5 HOH B 39 439 104 HOH HOH . N 5 HOH B 40 440 124 HOH HOH . N 5 HOH B 41 441 263 HOH HOH . N 5 HOH B 42 442 234 HOH HOH . N 5 HOH B 43 443 261 HOH HOH . N 5 HOH B 44 444 219 HOH HOH . N 5 HOH B 45 445 94 HOH HOH . N 5 HOH B 46 446 283 HOH HOH . N 5 HOH B 47 447 278 HOH HOH . N 5 HOH B 48 448 152 HOH HOH . N 5 HOH B 49 449 194 HOH HOH . N 5 HOH B 50 450 245 HOH HOH . N 5 HOH B 51 451 207 HOH HOH . N 5 HOH B 52 452 280 HOH HOH . N 5 HOH B 53 453 289 HOH HOH . N 5 HOH B 54 454 25 HOH HOH . N 5 HOH B 55 455 225 HOH HOH . N 5 HOH B 56 456 267 HOH HOH . N 5 HOH B 57 457 170 HOH HOH . N 5 HOH B 58 458 259 HOH HOH . N 5 HOH B 59 459 221 HOH HOH . N 5 HOH B 60 460 173 HOH HOH . O 5 HOH C 1 401 106 HOH HOH . O 5 HOH C 2 402 175 HOH HOH . O 5 HOH C 3 403 24 HOH HOH . O 5 HOH C 4 404 260 HOH HOH . O 5 HOH C 5 405 19 HOH HOH . O 5 HOH C 6 406 80 HOH HOH . O 5 HOH C 7 407 46 HOH HOH . O 5 HOH C 8 408 144 HOH HOH . O 5 HOH C 9 409 156 HOH HOH . O 5 HOH C 10 410 285 HOH HOH . O 5 HOH C 11 411 139 HOH HOH . O 5 HOH C 12 412 52 HOH HOH . O 5 HOH C 13 413 16 HOH HOH . O 5 HOH C 14 414 77 HOH HOH . O 5 HOH C 15 415 114 HOH HOH . O 5 HOH C 16 416 8 HOH HOH . O 5 HOH C 17 417 241 HOH HOH . O 5 HOH C 18 418 181 HOH HOH . O 5 HOH C 19 419 154 HOH HOH . O 5 HOH C 20 420 26 HOH HOH . O 5 HOH C 21 421 247 HOH HOH . O 5 HOH C 22 422 166 HOH HOH . O 5 HOH C 23 423 28 HOH HOH . O 5 HOH C 24 424 21 HOH HOH . O 5 HOH C 25 425 2 HOH HOH . O 5 HOH C 26 426 50 HOH HOH . O 5 HOH C 27 427 176 HOH HOH . O 5 HOH C 28 428 68 HOH HOH . O 5 HOH C 29 429 12 HOH HOH . O 5 HOH C 30 430 102 HOH HOH . O 5 HOH C 31 431 212 HOH HOH . O 5 HOH C 32 432 31 HOH HOH . O 5 HOH C 33 433 258 HOH HOH . O 5 HOH C 34 434 132 HOH HOH . O 5 HOH C 35 435 57 HOH HOH . O 5 HOH C 36 436 99 HOH HOH . O 5 HOH C 37 437 184 HOH HOH . O 5 HOH C 38 438 251 HOH HOH . O 5 HOH C 39 439 149 HOH HOH . O 5 HOH C 40 440 96 HOH HOH . O 5 HOH C 41 441 206 HOH HOH . O 5 HOH C 42 442 53 HOH HOH . O 5 HOH C 43 443 64 HOH HOH . O 5 HOH C 44 444 88 HOH HOH . O 5 HOH C 45 445 228 HOH HOH . O 5 HOH C 46 446 100 HOH HOH . O 5 HOH C 47 447 118 HOH HOH . O 5 HOH C 48 448 252 HOH HOH . O 5 HOH C 49 449 146 HOH HOH . O 5 HOH C 50 450 227 HOH HOH . O 5 HOH C 51 451 103 HOH HOH . O 5 HOH C 52 452 48 HOH HOH . O 5 HOH C 53 453 199 HOH HOH . O 5 HOH C 54 454 292 HOH HOH . O 5 HOH C 55 455 198 HOH HOH . O 5 HOH C 56 456 196 HOH HOH . O 5 HOH C 57 457 133 HOH HOH . O 5 HOH C 58 458 195 HOH HOH . O 5 HOH C 59 459 249 HOH HOH . O 5 HOH C 60 460 43 HOH HOH . O 5 HOH C 61 461 174 HOH HOH . O 5 HOH C 62 462 291 HOH HOH . O 5 HOH C 63 463 197 HOH HOH . O 5 HOH C 64 464 188 HOH HOH . O 5 HOH C 65 465 230 HOH HOH . O 5 HOH C 66 466 165 HOH HOH . O 5 HOH C 67 467 192 HOH HOH . O 5 HOH C 68 468 190 HOH HOH . O 5 HOH C 69 469 155 HOH HOH . O 5 HOH C 70 470 191 HOH HOH . O 5 HOH C 71 471 284 HOH HOH . O 5 HOH C 72 472 200 HOH HOH . P 5 HOH D 1 401 213 HOH HOH . P 5 HOH D 2 402 277 HOH HOH . P 5 HOH D 3 403 286 HOH HOH . P 5 HOH D 4 404 151 HOH HOH . P 5 HOH D 5 405 126 HOH HOH . P 5 HOH D 6 406 218 HOH HOH . P 5 HOH D 7 407 36 HOH HOH . P 5 HOH D 8 408 185 HOH HOH . P 5 HOH D 9 409 123 HOH HOH . P 5 HOH D 10 410 240 HOH HOH . P 5 HOH D 11 411 226 HOH HOH . P 5 HOH D 12 412 183 HOH HOH . P 5 HOH D 13 413 7 HOH HOH . P 5 HOH D 14 414 142 HOH HOH . P 5 HOH D 15 415 127 HOH HOH . P 5 HOH D 16 416 157 HOH HOH . P 5 HOH D 17 417 147 HOH HOH . P 5 HOH D 18 418 138 HOH HOH . P 5 HOH D 19 419 65 HOH HOH . P 5 HOH D 20 420 35 HOH HOH . P 5 HOH D 21 421 98 HOH HOH . P 5 HOH D 22 422 186 HOH HOH . P 5 HOH D 23 423 85 HOH HOH . P 5 HOH D 24 424 41 HOH HOH . P 5 HOH D 25 425 231 HOH HOH . P 5 HOH D 26 426 13 HOH HOH . P 5 HOH D 27 427 180 HOH HOH . P 5 HOH D 28 428 49 HOH HOH . P 5 HOH D 29 429 97 HOH HOH . P 5 HOH D 30 430 112 HOH HOH . P 5 HOH D 31 431 74 HOH HOH . P 5 HOH D 32 432 33 HOH HOH . P 5 HOH D 33 433 37 HOH HOH . P 5 HOH D 34 434 243 HOH HOH . P 5 HOH D 35 435 120 HOH HOH . P 5 HOH D 36 436 67 HOH HOH . P 5 HOH D 37 437 256 HOH HOH . P 5 HOH D 38 438 171 HOH HOH . P 5 HOH D 39 439 18 HOH HOH . P 5 HOH D 40 440 272 HOH HOH . P 5 HOH D 41 441 162 HOH HOH . P 5 HOH D 42 442 275 HOH HOH . P 5 HOH D 43 443 270 HOH HOH . P 5 HOH D 44 444 143 HOH HOH . P 5 HOH D 45 445 293 HOH HOH . P 5 HOH D 46 446 189 HOH HOH . P 5 HOH D 47 447 269 HOH HOH . P 5 HOH D 48 448 276 HOH HOH . P 5 HOH D 49 449 208 HOH HOH . P 5 HOH D 50 450 63 HOH HOH . P 5 HOH D 51 451 56 HOH HOH . P 5 HOH D 52 452 148 HOH HOH . P 5 HOH D 53 453 222 HOH HOH . P 5 HOH D 54 454 268 HOH HOH . P 5 HOH D 55 455 290 HOH HOH . P 5 HOH D 56 456 294 HOH HOH . P 5 HOH D 57 457 250 HOH HOH . P 5 HOH D 58 458 169 HOH HOH . P 5 HOH D 59 459 108 HOH HOH . P 5 HOH D 60 460 246 HOH HOH . P 5 HOH D 61 461 273 HOH HOH . P 5 HOH D 62 462 233 HOH HOH . P 5 HOH D 63 463 229 HOH HOH . P 5 HOH D 64 464 121 HOH HOH . P 5 HOH D 65 465 287 HOH HOH . P 5 HOH D 66 466 271 HOH HOH . P 5 HOH D 67 467 69 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . K 2 31.808 -23.144 -72.425 0.5 52.24 ? C1 CIT 301 D 1 HETATM 2 O O1 CIT . . . K 2 30.663 -23.495 -72.783 0.5 52.58 ? O1 CIT 301 D 1 HETATM 3 O O2 CIT . . . K 2 31.997 -22.828 -71.231 0.5 51.94 ? O2 CIT 301 D 1 HETATM 4 C C2 CIT . . . K 2 32.94 -23.118 -73.425 0.5 52.51 ? C2 CIT 301 D 1 HETATM 5 C C3 CIT . . . K 2 34.282 -23.227 -72.709 0.5 52.87 ? C3 CIT 301 D 1 HETATM 6 O O7 CIT . . . K 2 34.155 -24.15 -71.598 0.5 52.59 ? O7 CIT 301 D 1 HETATM 7 C C4 CIT . . . K 2 35.358 -23.739 -73.658 0.5 53.63 ? C4 CIT 301 D 1 HETATM 8 C C5 CIT . . . K 2 34.829 -24.932 -74.418 0.5 54.35 ? C5 CIT 301 D 1 HETATM 9 O O3 CIT . . . K 2 34.465 -24.817 -75.61 0.5 55.37 ? O3 CIT 301 D 1 HETATM 10 O O4 CIT . . . K 2 34.759 -26.053 -73.87 0.5 54.06 ? O4 CIT 301 D 1 HETATM 11 C C6 CIT . . . K 2 34.7 -21.867 -72.175 0.5 52.6 ? C6 CIT 301 D 1 HETATM 12 O O5 CIT . . . K 2 33.928 -20.889 -72.253 0.5 52.68 ? O5 CIT 301 D 1 HETATM 13 O O6 CIT . . . K 2 35.822 -21.716 -71.648 0.5 52.49 ? O6 CIT 301 D 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 227 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 13 #