data_5DHQ # _model_server_result.job_id -UxqqfeAMSNmnKfFwTauYQ _model_server_result.datetime_utc '2025-01-10 14:36:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dhq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":301}' # _entry.id 5DHQ # _exptl.entry_id 5DHQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 539.403 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 8-[(2-{[2-(3-bromophenyl)ethyl]amino}-2-oxoethyl)sulfanyl]adenosine _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.91 _cell.angle_gamma 90 _cell.entry_id 5DHQ _cell.length_a 66.79 _cell.length_b 119.18 _cell.length_c 67.21 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DHQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 I N N ? 3 K N N # _chem_comp.formula 'C20 H23 Br N6 O5 S' _chem_comp.formula_weight 539.403 _chem_comp.id 5AK _chem_comp.mon_nstd_flag . _chem_comp.name 8-[(2-{[2-(3-bromophenyl)ethyl]amino}-2-oxoethyl)sulfanyl]adenosine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAN CAM 5AK sing 1 n n CAN CAY 5AK sing 2 n n CAM NAS 5AK sing 3 n n CAY CAK 5AK doub 4 n y CAY CAJ 5AK sing 5 n y CAK CAW 5AK sing 6 n y NAS CAV 5AK sing 7 n n N6 C6 5AK sing 8 n n CAJ CAG 5AK doub 9 n y OAB CAV 5AK doub 10 n n CAV CAO 5AK sing 11 n n CAW BR 5AK sing 12 n n CAW CAI 5AK doub 13 n y C6 N1 5AK doub 14 n y C6 C5 5AK sing 15 n y CAG CAI 5AK sing 16 n y N1 C2 5AK sing 17 n y N7 C5 5AK sing 18 n y N7 C8 5AK doub 19 n y CAO SAU 5AK sing 20 n n C5 C4 5AK doub 21 n y C8 SAU 5AK sing 22 n n C8 N9 5AK sing 23 n y C2 N3 5AK doub 24 n y C4 N3 5AK sing 25 n y C4 N9 5AK sing 26 n y N9 C1' 5AK sing 27 n n O4' C1' 5AK sing 28 n n O4' C4' 5AK sing 29 n n C1' C2' 5AK sing 30 n n C2' C3' 5AK sing 31 n n C2' O2' 5AK sing 32 n n C5' C4' 5AK sing 33 n n C5' O5' 5AK sing 34 n n C4' C3' 5AK sing 35 n n C3' O3' 5AK sing 36 n n CAK H1 5AK sing 37 n n CAI H2 5AK sing 38 n n CAG H3 5AK sing 39 n n CAJ H4 5AK sing 40 n n CAN H5 5AK sing 41 n n CAN H6 5AK sing 42 n n CAM H7 5AK sing 43 n n CAM H8 5AK sing 44 n n NAS H9 5AK sing 45 n n CAO H10 5AK sing 46 n n CAO H11 5AK sing 47 n n N6 H12 5AK sing 48 n n N6 H13 5AK sing 49 n n C2 H14 5AK sing 50 n n C1' H15 5AK sing 51 n n C4' H16 5AK sing 52 n n C5' H17 5AK sing 53 n n C5' H18 5AK sing 54 n n O5' H19 5AK sing 55 n n C3' H20 5AK sing 56 n n O3' H21 5AK sing 57 n n C2' H22 5AK sing 58 n n O2' H23 5AK sing 59 n n # _atom_sites.entry_id 5DHQ _atom_sites.fract_transf_matrix[1][1] 0.014972 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002616 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008391 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015104 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 CIT A 1 301 3 CIT CIT . F 3 5AK A 1 302 1 5AK DRG . G 2 CIT B 1 301 2 CIT CIT . H 3 5AK B 1 302 1 5AK DRG . I 3 5AK C 1 301 1 5AK DRG . J 4 GOL C 1 302 1 GOL GOL . K 3 5AK D 1 301 1 5AK DRG . L 5 HOH A 1 401 50 HOH HOH . L 5 HOH A 2 402 29 HOH HOH . L 5 HOH A 3 403 178 HOH HOH . L 5 HOH A 4 404 151 HOH HOH . L 5 HOH A 5 405 164 HOH HOH . L 5 HOH A 6 406 7 HOH HOH . L 5 HOH A 7 407 74 HOH HOH . L 5 HOH A 8 408 1 HOH HOH . L 5 HOH A 9 409 187 HOH HOH . L 5 HOH A 10 410 167 HOH HOH . L 5 HOH A 11 411 11 HOH HOH . L 5 HOH A 12 412 18 HOH HOH . L 5 HOH A 13 413 31 HOH HOH . L 5 HOH A 14 414 12 HOH HOH . L 5 HOH A 15 415 27 HOH HOH . L 5 HOH A 16 416 8 HOH HOH . L 5 HOH A 17 417 117 HOH HOH . L 5 HOH A 18 418 43 HOH HOH . L 5 HOH A 19 419 13 HOH HOH . L 5 HOH A 20 420 185 HOH HOH . L 5 HOH A 21 421 6 HOH HOH . L 5 HOH A 22 422 57 HOH HOH . L 5 HOH A 23 423 81 HOH HOH . L 5 HOH A 24 424 152 HOH HOH . L 5 HOH A 25 425 32 HOH HOH . L 5 HOH A 26 426 17 HOH HOH . L 5 HOH A 27 427 68 HOH HOH . L 5 HOH A 28 428 94 HOH HOH . L 5 HOH A 29 429 109 HOH HOH . L 5 HOH A 30 430 22 HOH HOH . L 5 HOH A 31 431 166 HOH HOH . L 5 HOH A 32 432 155 HOH HOH . L 5 HOH A 33 433 60 HOH HOH . L 5 HOH A 34 434 100 HOH HOH . L 5 HOH A 35 435 110 HOH HOH . L 5 HOH A 36 436 125 HOH HOH . L 5 HOH A 37 437 98 HOH HOH . L 5 HOH A 38 438 41 HOH HOH . L 5 HOH A 39 439 201 HOH HOH . L 5 HOH A 40 440 39 HOH HOH . L 5 HOH A 41 441 138 HOH HOH . L 5 HOH A 42 442 52 HOH HOH . L 5 HOH A 43 443 146 HOH HOH . L 5 HOH A 44 444 207 HOH HOH . L 5 HOH A 45 445 79 HOH HOH . L 5 HOH A 46 446 75 HOH HOH . L 5 HOH A 47 447 139 HOH HOH . L 5 HOH A 48 448 192 HOH HOH . L 5 HOH A 49 449 123 HOH HOH . L 5 HOH A 50 450 177 HOH HOH . L 5 HOH A 51 451 124 HOH HOH . L 5 HOH A 52 452 200 HOH HOH . L 5 HOH A 53 453 157 HOH HOH . L 5 HOH A 54 454 169 HOH HOH . L 5 HOH A 55 455 199 HOH HOH . L 5 HOH A 56 456 202 HOH HOH . M 5 HOH B 1 401 141 HOH HOH . M 5 HOH B 2 402 4 HOH HOH . M 5 HOH B 3 403 20 HOH HOH . M 5 HOH B 4 404 5 HOH HOH . M 5 HOH B 5 405 92 HOH HOH . M 5 HOH B 6 406 80 HOH HOH . M 5 HOH B 7 407 194 HOH HOH . M 5 HOH B 8 408 82 HOH HOH . M 5 HOH B 9 409 25 HOH HOH . M 5 HOH B 10 410 54 HOH HOH . M 5 HOH B 11 411 67 HOH HOH . M 5 HOH B 12 412 62 HOH HOH . M 5 HOH B 13 413 40 HOH HOH . M 5 HOH B 14 414 113 HOH HOH . M 5 HOH B 15 415 87 HOH HOH . M 5 HOH B 16 416 46 HOH HOH . M 5 HOH B 17 417 85 HOH HOH . M 5 HOH B 18 418 44 HOH HOH . M 5 HOH B 19 419 19 HOH HOH . M 5 HOH B 20 420 134 HOH HOH . M 5 HOH B 21 421 158 HOH HOH . M 5 HOH B 22 422 131 HOH HOH . M 5 HOH B 23 423 99 HOH HOH . M 5 HOH B 24 424 172 HOH HOH . M 5 HOH B 25 425 174 HOH HOH . M 5 HOH B 26 426 162 HOH HOH . M 5 HOH B 27 427 101 HOH HOH . M 5 HOH B 28 428 102 HOH HOH . M 5 HOH B 29 429 143 HOH HOH . M 5 HOH B 30 430 37 HOH HOH . M 5 HOH B 31 431 168 HOH HOH . M 5 HOH B 32 432 135 HOH HOH . M 5 HOH B 33 433 140 HOH HOH . M 5 HOH B 34 434 104 HOH HOH . M 5 HOH B 35 435 160 HOH HOH . M 5 HOH B 36 436 193 HOH HOH . N 5 HOH C 1 401 96 HOH HOH . N 5 HOH C 2 402 105 HOH HOH . N 5 HOH C 3 403 3 HOH HOH . N 5 HOH C 4 404 119 HOH HOH . N 5 HOH C 5 405 38 HOH HOH . N 5 HOH C 6 406 97 HOH HOH . N 5 HOH C 7 407 209 HOH HOH . N 5 HOH C 8 408 121 HOH HOH . N 5 HOH C 9 409 42 HOH HOH . N 5 HOH C 10 410 63 HOH HOH . N 5 HOH C 11 411 122 HOH HOH . N 5 HOH C 12 412 154 HOH HOH . N 5 HOH C 13 413 10 HOH HOH . N 5 HOH C 14 414 47 HOH HOH . N 5 HOH C 15 415 36 HOH HOH . N 5 HOH C 16 416 21 HOH HOH . N 5 HOH C 17 417 14 HOH HOH . N 5 HOH C 18 418 2 HOH HOH . N 5 HOH C 19 419 118 HOH HOH . N 5 HOH C 20 420 191 HOH HOH . N 5 HOH C 21 421 86 HOH HOH . N 5 HOH C 22 422 91 HOH HOH . N 5 HOH C 23 423 73 HOH HOH . N 5 HOH C 24 424 72 HOH HOH . N 5 HOH C 25 425 112 HOH HOH . N 5 HOH C 26 426 34 HOH HOH . N 5 HOH C 27 427 26 HOH HOH . N 5 HOH C 28 428 53 HOH HOH . N 5 HOH C 29 429 126 HOH HOH . N 5 HOH C 30 430 186 HOH HOH . N 5 HOH C 31 431 16 HOH HOH . N 5 HOH C 32 432 33 HOH HOH . N 5 HOH C 33 433 65 HOH HOH . N 5 HOH C 34 434 70 HOH HOH . N 5 HOH C 35 435 115 HOH HOH . N 5 HOH C 36 436 55 HOH HOH . N 5 HOH C 37 437 77 HOH HOH . N 5 HOH C 38 438 181 HOH HOH . N 5 HOH C 39 439 30 HOH HOH . N 5 HOH C 40 440 144 HOH HOH . N 5 HOH C 41 441 130 HOH HOH . N 5 HOH C 42 442 108 HOH HOH . N 5 HOH C 43 443 133 HOH HOH . N 5 HOH C 44 444 48 HOH HOH . N 5 HOH C 45 445 103 HOH HOH . N 5 HOH C 46 446 147 HOH HOH . N 5 HOH C 47 447 56 HOH HOH . N 5 HOH C 48 448 116 HOH HOH . N 5 HOH C 49 449 149 HOH HOH . N 5 HOH C 50 450 204 HOH HOH . N 5 HOH C 51 451 214 HOH HOH . N 5 HOH C 52 452 71 HOH HOH . N 5 HOH C 53 453 129 HOH HOH . N 5 HOH C 54 454 148 HOH HOH . N 5 HOH C 55 455 180 HOH HOH . N 5 HOH C 56 456 28 HOH HOH . N 5 HOH C 57 457 156 HOH HOH . N 5 HOH C 58 458 120 HOH HOH . N 5 HOH C 59 459 190 HOH HOH . N 5 HOH C 60 460 179 HOH HOH . N 5 HOH C 61 461 206 HOH HOH . N 5 HOH C 62 462 182 HOH HOH . N 5 HOH C 63 463 189 HOH HOH . O 5 HOH D 1 401 9 HOH HOH . O 5 HOH D 2 402 196 HOH HOH . O 5 HOH D 3 403 136 HOH HOH . O 5 HOH D 4 404 106 HOH HOH . O 5 HOH D 5 405 78 HOH HOH . O 5 HOH D 6 406 137 HOH HOH . O 5 HOH D 7 407 195 HOH HOH . O 5 HOH D 8 408 188 HOH HOH . O 5 HOH D 9 409 150 HOH HOH . O 5 HOH D 10 410 84 HOH HOH . O 5 HOH D 11 411 95 HOH HOH . O 5 HOH D 12 412 51 HOH HOH . O 5 HOH D 13 413 114 HOH HOH . O 5 HOH D 14 414 66 HOH HOH . O 5 HOH D 15 415 208 HOH HOH . O 5 HOH D 16 416 64 HOH HOH . O 5 HOH D 17 417 58 HOH HOH . O 5 HOH D 18 418 15 HOH HOH . O 5 HOH D 19 419 127 HOH HOH . O 5 HOH D 20 420 173 HOH HOH . O 5 HOH D 21 421 213 HOH HOH . O 5 HOH D 22 422 61 HOH HOH . O 5 HOH D 23 423 49 HOH HOH . O 5 HOH D 24 424 90 HOH HOH . O 5 HOH D 25 425 153 HOH HOH . O 5 HOH D 26 426 197 HOH HOH . O 5 HOH D 27 427 161 HOH HOH . O 5 HOH D 28 428 183 HOH HOH . O 5 HOH D 29 429 142 HOH HOH . O 5 HOH D 30 430 198 HOH HOH . O 5 HOH D 31 431 205 HOH HOH . O 5 HOH D 32 432 159 HOH HOH . O 5 HOH D 33 433 145 HOH HOH . O 5 HOH D 34 434 203 HOH HOH . O 5 HOH D 35 435 76 HOH HOH . O 5 HOH D 36 436 211 HOH HOH . O 5 HOH D 37 437 83 HOH HOH . O 5 HOH D 38 438 184 HOH HOH . O 5 HOH D 39 439 210 HOH HOH . O 5 HOH D 40 440 132 HOH HOH . O 5 HOH D 41 441 170 HOH HOH . O 5 HOH D 42 442 212 HOH HOH . O 5 HOH D 43 443 89 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 5AK . . . I 3 10.729 -2.825 -58.769 1 32.73 ? C4 5AK 301 C 1 HETATM 2 C C5 5AK . . . I 3 10.488 -3.337 -57.596 1 29.78 ? C5 5AK 301 C 1 HETATM 3 C C6 5AK . . . I 3 11.248 -2.933 -56.6 1 31.44 ? C6 5AK 301 C 1 HETATM 4 C C8 5AK . . . I 3 9.15 -4.178 -58.971 1 41.48 ? C8 5AK 301 C 1 HETATM 5 N N1 5AK . . . I 3 12.206 -2.052 -56.726 1 29.68 ? N1 5AK 301 C 1 HETATM 6 N N3 5AK . . . I 3 11.674 -1.937 -58.978 1 27.63 ? N3 5AK 301 C 1 HETATM 7 C CAK 5AK . . . I 3 7.401 -2.081 -55.821 1 30.54 ? CAK 5AK 301 C 1 HETATM 8 C CAW 5AK . . . I 3 7.761 -1.211 -56.813 1 38.4 ? CAW 5AK 301 C 1 HETATM 9 BR BR 5AK . . . I 3 9.047 -0.05 -56.593 1 112.22 ? BR 5AK 301 C 1 HETATM 10 C CAI 5AK . . . I 3 7.1 -1.271 -58.015 1 31.04 ? CAI 5AK 301 C 1 HETATM 11 C CAG 5AK . . . I 3 6.092 -2.171 -58.232 1 29.8 ? CAG 5AK 301 C 1 HETATM 12 C CAJ 5AK . . . I 3 5.742 -3.03 -57.232 1 29.66 ? CAJ 5AK 301 C 1 HETATM 13 C CAY 5AK . . . I 3 6.394 -2.983 -56.035 1 36.6 ? CAY 5AK 301 C 1 HETATM 14 C CAN 5AK . . . I 3 6.04 -3.846 -55.046 1 36.99 ? CAN 5AK 301 C 1 HETATM 15 C CAM 5AK . . . I 3 5.981 -5.297 -55.515 1 54.4 ? CAM 5AK 301 C 1 HETATM 16 N NAS 5AK . . . I 3 7.02 -5.587 -56.483 1 63.24 ? NAS 5AK 301 C 1 HETATM 17 C CAV 5AK . . . I 3 6.757 -6.246 -57.576 1 69.25 ? CAV 5AK 301 C 1 HETATM 18 O OAB 5AK . . . I 3 5.652 -6.685 -57.838 1 73.56 ? OAB 5AK 301 C 1 HETATM 19 C CAO 5AK . . . I 3 7.934 -6.43 -58.498 1 62.29 ? CAO 5AK 301 C 1 HETATM 20 S SAU 5AK . . . I 3 8.041 -5.011 -59.607 1 49.09 ? SAU 5AK 301 C 1 HETATM 21 N N7 5AK . . . I 3 9.497 -4.188 -57.72 1 28.38 ? N7 5AK 301 C 1 HETATM 22 N N6 5AK . . . I 3 11.031 -3.434 -55.427 1 31.49 ? N6 5AK 301 C 1 HETATM 23 C C2 5AK . . . I 3 12.542 -1.415 -57.963 1 27.74 ? C2 5AK 301 C 1 HETATM 24 N N9 5AK . . . I 3 9.894 -3.336 -59.62 1 41.04 ? N9 5AK 301 C 1 HETATM 25 C C1' 5AK . . . I 3 9.954 -2.948 -60.998 1 45.48 ? C1' 5AK 301 C 1 HETATM 26 O O4' 5AK . . . I 3 8.72 -2.388 -61.293 1 40.14 ? O4' 5AK 301 C 1 HETATM 27 C C4' 5AK . . . I 3 8.379 -2.821 -62.554 1 50.59 ? C4' 5AK 301 C 1 HETATM 28 C C5' 5AK . . . I 3 6.891 -2.837 -62.381 1 53.28 ? C5' 5AK 301 C 1 HETATM 29 O O5' 5AK . . . I 3 6.363 -1.861 -63.242 1 58.46 ? O5' 5AK 301 C 1 HETATM 30 C C3' 5AK . . . I 3 8.865 -4.221 -62.643 1 44.05 ? C3' 5AK 301 C 1 HETATM 31 O O3' 5AK . . . I 3 9.267 -4.472 -63.933 1 30.04 ? O3' 5AK 301 C 1 HETATM 32 C C2' 5AK . . . I 3 10.074 -4.18 -61.832 1 50.07 ? C2' 5AK 301 C 1 HETATM 33 O O2' 5AK . . . I 3 11.105 -4.03 -62.715 1 52.34 ? O2' 5AK 301 C 1 # _model_server_stats.io_time_ms 109 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 33 #