data_5DHT # _model_server_result.job_id gD2iGF1Jv35koxFJLINx6w _model_server_result.datetime_utc '2024-11-12 21:15:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dht # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":301}' # _entry.id 5DHT # _exptl.entry_id 5DHT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.03 _cell.angle_gamma 90 _cell.entry_id 5DHT _cell.length_a 66.781 _cell.length_b 119.072 _cell.length_c 67.347 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DHT _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 H N N # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 130 n n C1 O2 CIT sing 131 n n C1 C2 CIT sing 132 n n O2 HO2 CIT sing 133 n n C2 C3 CIT sing 134 n n C2 H21 CIT sing 135 n n C2 H22 CIT sing 136 n n C3 O7 CIT sing 137 n n C3 C4 CIT sing 138 n n C3 C6 CIT sing 139 n n O7 HO7 CIT sing 140 n n C4 C5 CIT sing 141 n n C4 H41 CIT sing 142 n n C4 H42 CIT sing 143 n n C5 O3 CIT doub 144 n n C5 O4 CIT sing 145 n n O4 HO4 CIT sing 146 n n C6 O5 CIT doub 147 n n C6 O6 CIT sing 148 n n O6 HO6 CIT sing 149 n n # _atom_sites.entry_id 5DHT _atom_sites.fract_transf_matrix[1][1] 0.014974 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00265 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008398 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015079 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 CIT A 1 301 3 CIT CIT . F 3 GOL A 1 302 1 GOL GOL . G 4 5A9 A 1 303 1 5A9 DRG . H 2 CIT B 1 301 2 CIT CIT . I 4 5A9 B 1 302 1 5A9 DRG . J 4 5A9 C 1 301 1 5A9 DRG . K 3 GOL D 1 301 1 GOL GOL . L 4 5A9 D 1 302 1 5A9 DRG . M 5 HOH A 1 401 58 HOH HOH . M 5 HOH A 2 402 211 HOH HOH . M 5 HOH A 3 403 77 HOH HOH . M 5 HOH A 4 404 31 HOH HOH . M 5 HOH A 5 405 26 HOH HOH . M 5 HOH A 6 406 76 HOH HOH . M 5 HOH A 7 407 201 HOH HOH . M 5 HOH A 8 408 38 HOH HOH . M 5 HOH A 9 409 29 HOH HOH . M 5 HOH A 10 410 210 HOH HOH . M 5 HOH A 11 411 162 HOH HOH . M 5 HOH A 12 412 46 HOH HOH . M 5 HOH A 13 413 7 HOH HOH . M 5 HOH A 14 414 35 HOH HOH . M 5 HOH A 15 415 63 HOH HOH . M 5 HOH A 16 416 3 HOH HOH . M 5 HOH A 17 417 65 HOH HOH . M 5 HOH A 18 418 68 HOH HOH . M 5 HOH A 19 419 110 HOH HOH . M 5 HOH A 20 420 1 HOH HOH . M 5 HOH A 21 421 44 HOH HOH . M 5 HOH A 22 422 179 HOH HOH . M 5 HOH A 23 423 5 HOH HOH . M 5 HOH A 24 424 4 HOH HOH . M 5 HOH A 25 425 183 HOH HOH . M 5 HOH A 26 426 70 HOH HOH . M 5 HOH A 27 427 8 HOH HOH . M 5 HOH A 28 428 142 HOH HOH . M 5 HOH A 29 429 203 HOH HOH . M 5 HOH A 30 430 30 HOH HOH . M 5 HOH A 31 431 28 HOH HOH . M 5 HOH A 32 432 163 HOH HOH . M 5 HOH A 33 433 27 HOH HOH . M 5 HOH A 34 434 139 HOH HOH . M 5 HOH A 35 435 90 HOH HOH . M 5 HOH A 36 436 207 HOH HOH . M 5 HOH A 37 437 108 HOH HOH . M 5 HOH A 38 438 118 HOH HOH . M 5 HOH A 39 439 102 HOH HOH . M 5 HOH A 40 440 130 HOH HOH . M 5 HOH A 41 441 82 HOH HOH . M 5 HOH A 42 442 168 HOH HOH . M 5 HOH A 43 443 164 HOH HOH . M 5 HOH A 44 444 181 HOH HOH . M 5 HOH A 45 445 204 HOH HOH . M 5 HOH A 46 446 194 HOH HOH . M 5 HOH A 47 447 135 HOH HOH . M 5 HOH A 48 448 81 HOH HOH . M 5 HOH A 49 449 174 HOH HOH . M 5 HOH A 50 450 141 HOH HOH . M 5 HOH A 51 451 79 HOH HOH . M 5 HOH A 52 452 202 HOH HOH . M 5 HOH A 53 453 169 HOH HOH . M 5 HOH A 54 454 143 HOH HOH . M 5 HOH A 55 455 172 HOH HOH . M 5 HOH A 56 456 158 HOH HOH . M 5 HOH A 57 457 144 HOH HOH . M 5 HOH A 58 458 113 HOH HOH . M 5 HOH A 59 459 105 HOH HOH . M 5 HOH A 60 460 153 HOH HOH . M 5 HOH A 61 461 117 HOH HOH . N 5 HOH B 1 401 151 HOH HOH . N 5 HOH B 2 402 212 HOH HOH . N 5 HOH B 3 403 59 HOH HOH . N 5 HOH B 4 404 21 HOH HOH . N 5 HOH B 5 405 145 HOH HOH . N 5 HOH B 6 406 123 HOH HOH . N 5 HOH B 7 407 23 HOH HOH . N 5 HOH B 8 408 24 HOH HOH . N 5 HOH B 9 409 48 HOH HOH . N 5 HOH B 10 410 69 HOH HOH . N 5 HOH B 11 411 84 HOH HOH . N 5 HOH B 12 412 32 HOH HOH . N 5 HOH B 13 413 60 HOH HOH . N 5 HOH B 14 414 136 HOH HOH . N 5 HOH B 15 415 200 HOH HOH . N 5 HOH B 16 416 25 HOH HOH . N 5 HOH B 17 417 20 HOH HOH . N 5 HOH B 18 418 50 HOH HOH . N 5 HOH B 19 419 92 HOH HOH . N 5 HOH B 20 420 22 HOH HOH . N 5 HOH B 21 421 66 HOH HOH . N 5 HOH B 22 422 89 HOH HOH . N 5 HOH B 23 423 57 HOH HOH . N 5 HOH B 24 424 19 HOH HOH . N 5 HOH B 25 425 178 HOH HOH . N 5 HOH B 26 426 88 HOH HOH . N 5 HOH B 27 427 43 HOH HOH . N 5 HOH B 28 428 112 HOH HOH . N 5 HOH B 29 429 173 HOH HOH . N 5 HOH B 30 430 87 HOH HOH . N 5 HOH B 31 431 192 HOH HOH . N 5 HOH B 32 432 93 HOH HOH . N 5 HOH B 33 433 170 HOH HOH . N 5 HOH B 34 434 114 HOH HOH . N 5 HOH B 35 435 128 HOH HOH . N 5 HOH B 36 436 160 HOH HOH . N 5 HOH B 37 437 83 HOH HOH . N 5 HOH B 38 438 184 HOH HOH . N 5 HOH B 39 439 214 HOH HOH . N 5 HOH B 40 440 137 HOH HOH . N 5 HOH B 41 441 182 HOH HOH . N 5 HOH B 42 442 205 HOH HOH . N 5 HOH B 43 443 165 HOH HOH . N 5 HOH B 44 444 111 HOH HOH . O 5 HOH C 1 401 106 HOH HOH . O 5 HOH C 2 402 75 HOH HOH . O 5 HOH C 3 403 193 HOH HOH . O 5 HOH C 4 404 17 HOH HOH . O 5 HOH C 5 405 41 HOH HOH . O 5 HOH C 6 406 126 HOH HOH . O 5 HOH C 7 407 171 HOH HOH . O 5 HOH C 8 408 147 HOH HOH . O 5 HOH C 9 409 64 HOH HOH . O 5 HOH C 10 410 54 HOH HOH . O 5 HOH C 11 411 37 HOH HOH . O 5 HOH C 12 412 52 HOH HOH . O 5 HOH C 13 413 14 HOH HOH . O 5 HOH C 14 414 115 HOH HOH . O 5 HOH C 15 415 125 HOH HOH . O 5 HOH C 16 416 16 HOH HOH . O 5 HOH C 17 417 180 HOH HOH . O 5 HOH C 18 418 129 HOH HOH . O 5 HOH C 19 419 67 HOH HOH . O 5 HOH C 20 420 86 HOH HOH . O 5 HOH C 21 421 140 HOH HOH . O 5 HOH C 22 422 185 HOH HOH . O 5 HOH C 23 423 159 HOH HOH . O 5 HOH C 24 424 96 HOH HOH . O 5 HOH C 25 425 152 HOH HOH . O 5 HOH C 26 426 104 HOH HOH . O 5 HOH C 27 427 6 HOH HOH . O 5 HOH C 28 428 109 HOH HOH . O 5 HOH C 29 429 146 HOH HOH . O 5 HOH C 30 430 206 HOH HOH . O 5 HOH C 31 431 132 HOH HOH . O 5 HOH C 32 432 154 HOH HOH . O 5 HOH C 33 433 186 HOH HOH . O 5 HOH C 34 434 199 HOH HOH . O 5 HOH C 35 435 188 HOH HOH . O 5 HOH C 36 436 98 HOH HOH . O 5 HOH C 37 437 148 HOH HOH . O 5 HOH C 38 438 138 HOH HOH . O 5 HOH C 39 439 103 HOH HOH . O 5 HOH C 40 440 187 HOH HOH . O 5 HOH C 41 441 208 HOH HOH . O 5 HOH C 42 442 190 HOH HOH . O 5 HOH C 43 443 99 HOH HOH . O 5 HOH C 44 444 195 HOH HOH . P 5 HOH D 1 401 149 HOH HOH . P 5 HOH D 2 402 18 HOH HOH . P 5 HOH D 3 403 177 HOH HOH . P 5 HOH D 4 404 36 HOH HOH . P 5 HOH D 5 405 53 HOH HOH . P 5 HOH D 6 406 34 HOH HOH . P 5 HOH D 7 407 15 HOH HOH . P 5 HOH D 8 408 39 HOH HOH . P 5 HOH D 9 409 80 HOH HOH . P 5 HOH D 10 410 40 HOH HOH . P 5 HOH D 11 411 191 HOH HOH . P 5 HOH D 12 412 13 HOH HOH . P 5 HOH D 13 413 131 HOH HOH . P 5 HOH D 14 414 107 HOH HOH . P 5 HOH D 15 415 120 HOH HOH . P 5 HOH D 16 416 197 HOH HOH . P 5 HOH D 17 417 95 HOH HOH . P 5 HOH D 18 418 33 HOH HOH . P 5 HOH D 19 419 74 HOH HOH . P 5 HOH D 20 420 11 HOH HOH . P 5 HOH D 21 421 121 HOH HOH . P 5 HOH D 22 422 155 HOH HOH . P 5 HOH D 23 423 175 HOH HOH . P 5 HOH D 24 424 116 HOH HOH . P 5 HOH D 25 425 189 HOH HOH . P 5 HOH D 26 426 101 HOH HOH . P 5 HOH D 27 427 166 HOH HOH . P 5 HOH D 28 428 157 HOH HOH . P 5 HOH D 29 429 198 HOH HOH . P 5 HOH D 30 430 97 HOH HOH . P 5 HOH D 31 431 122 HOH HOH . P 5 HOH D 32 432 156 HOH HOH . P 5 HOH D 33 433 167 HOH HOH . P 5 HOH D 34 434 176 HOH HOH . P 5 HOH D 35 435 209 HOH HOH . P 5 HOH D 36 436 213 HOH HOH . P 5 HOH D 37 437 100 HOH HOH . P 5 HOH D 38 438 119 HOH HOH . P 5 HOH D 39 439 196 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . H 2 20.638 7.378 -24.142 1 78.77 ? C1 CIT 301 B 1 HETATM 2 O O1 CIT . . . H 2 21.669 8.059 -24.331 1 79 ? O1 CIT 301 B 1 HETATM 3 O O2 CIT . . . H 2 19.803 7.774 -23.3 1 78.79 ? O2 CIT 301 B 1 HETATM 4 C C2 CIT . . . H 2 20.401 6.101 -24.914 1 79.91 ? C2 CIT 301 B 1 HETATM 5 C C3 CIT . . . H 2 20.595 6.321 -26.413 1 80.85 ? C3 CIT 301 B 1 HETATM 6 O O7 CIT . . . H 2 19.993 7.577 -26.816 1 84.38 ? O7 CIT 301 B 1 HETATM 7 C C4 CIT . . . H 2 19.976 5.187 -27.219 1 77.61 ? C4 CIT 301 B 1 HETATM 8 C C5 CIT . . . H 2 18.522 5.473 -27.501 1 75.37 ? C5 CIT 301 B 1 HETATM 9 O O3 CIT . . . H 2 18.031 5.198 -28.619 1 74.94 ? O3 CIT 301 B 1 HETATM 10 O O4 CIT . . . H 2 17.792 5.992 -26.63 1 74.83 ? O4 CIT 301 B 1 HETATM 11 C C6 CIT . . . H 2 22.08 6.356 -26.727 1 82.33 ? C6 CIT 301 B 1 HETATM 12 O O5 CIT . . . H 2 22.485 6.939 -27.756 1 82.3 ? O5 CIT 301 B 1 HETATM 13 O O6 CIT . . . H 2 22.904 5.804 -25.966 1 82.73 ? O6 CIT 301 B 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #