data_5DIA # _model_server_result.job_id e6k2ZnbbQwDsn-tDpT_VsQ _model_server_result.datetime_utc '2024-10-17 13:17:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dia # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5DIA # _exptl.entry_id 5DIA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 385.465 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1S,3S)-N-{6-[5-(pyridin-3-yl)-1H-pyrazolo[3,4-c]pyridin-3-yl]pyridin-2-yl}cyclohexane-1,3-diamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5DIA _cell.length_a 97.079 _cell.length_b 97.079 _cell.length_c 80.687 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DIA _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H23 N7' _chem_comp.formula_weight 385.465 _chem_comp.id 5E6 _chem_comp.mon_nstd_flag . _chem_comp.name (1S,3S)-N-{6-[5-(pyridin-3-yl)-1H-pyrazolo[3,4-c]pyridin-3-yl]pyridin-2-yl}cyclohexane-1,3-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C20 N19 5E6 doub 1 n y C20 C21 5E6 sing 2 n y N22 C21 5E6 sing 3 n y N22 N24 5E6 sing 4 n y N19 C18 5E6 sing 5 n y C21 C16 5E6 doub 6 n y C30 N29 5E6 doub 7 n y C30 C25 5E6 sing 8 n y N24 C15 5E6 doub 9 n y C18 C25 5E6 sing 10 n n C18 C17 5E6 doub 11 n y N29 C28 5E6 sing 12 n y C16 C15 5E6 sing 13 n y C16 C17 5E6 sing 14 n y C25 C26 5E6 doub 15 n y C15 C3 5E6 sing 16 n n C28 C27 5E6 doub 17 n y C26 C27 5E6 sing 18 n y C3 C2 5E6 doub 19 n y C3 N4 5E6 sing 20 n y C2 C1 5E6 sing 21 n y N4 C5 5E6 doub 22 n y C1 C6 5E6 doub 23 n y C5 C6 5E6 sing 24 n y C5 N7 5E6 sing 25 n n C8 C9 5E6 sing 26 n n C8 N7 5E6 sing 27 n n C8 C13 5E6 sing 28 n n C9 C10 5E6 sing 29 n n C13 C12 5E6 sing 30 n n C10 C11 5E6 sing 31 n n C12 C11 5E6 sing 32 n n C12 N14 5E6 sing 33 n n C9 H1 5E6 sing 34 n n C9 H2 5E6 sing 35 n n C2 H3 5E6 sing 36 n n C10 H4 5E6 sing 37 n n C10 H5 5E6 sing 38 n n C6 H6 5E6 sing 39 n n C1 H7 5E6 sing 40 n n N7 H8 5E6 sing 41 n n C8 H9 5E6 sing 42 n n C11 H10 5E6 sing 43 n n C11 H11 5E6 sing 44 n n C12 H12 5E6 sing 45 n n C13 H13 5E6 sing 46 n n C13 H14 5E6 sing 47 n n N14 H15 5E6 sing 48 n n N14 H16 5E6 sing 49 n n C17 H18 5E6 sing 50 n n C20 H19 5E6 sing 51 n n N22 H23 5E6 sing 52 n n C26 H20 5E6 sing 53 n n C27 H21 5E6 sing 54 n n C28 H22 5E6 sing 55 n n C30 H24 5E6 sing 56 n n # _atom_sites.entry_id 5DIA _atom_sites.fract_transf_matrix[1][1] 0.010301 _atom_sites.fract_transf_matrix[1][2] 0.005947 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011894 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012394 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5E6 A 1 401 1 5E6 ZZZ . C 3 HOH A 1 501 42 HOH HOH . C 3 HOH A 2 502 167 HOH HOH . C 3 HOH A 3 503 70 HOH HOH . C 3 HOH A 4 504 174 HOH HOH . C 3 HOH A 5 505 151 HOH HOH . C 3 HOH A 6 506 194 HOH HOH . C 3 HOH A 7 507 139 HOH HOH . C 3 HOH A 8 508 110 HOH HOH . C 3 HOH A 9 509 216 HOH HOH . C 3 HOH A 10 510 146 HOH HOH . C 3 HOH A 11 511 195 HOH HOH . C 3 HOH A 12 512 35 HOH HOH . C 3 HOH A 13 513 154 HOH HOH . C 3 HOH A 14 514 78 HOH HOH . C 3 HOH A 15 515 143 HOH HOH . C 3 HOH A 16 516 73 HOH HOH . C 3 HOH A 17 517 60 HOH HOH . C 3 HOH A 18 518 56 HOH HOH . C 3 HOH A 19 519 53 HOH HOH . C 3 HOH A 20 520 44 HOH HOH . C 3 HOH A 21 521 142 HOH HOH . C 3 HOH A 22 522 48 HOH HOH . C 3 HOH A 23 523 192 HOH HOH . C 3 HOH A 24 524 5 HOH HOH . C 3 HOH A 25 525 116 HOH HOH . C 3 HOH A 26 526 126 HOH HOH . C 3 HOH A 27 527 52 HOH HOH . C 3 HOH A 28 528 140 HOH HOH . C 3 HOH A 29 529 63 HOH HOH . C 3 HOH A 30 530 138 HOH HOH . C 3 HOH A 31 531 45 HOH HOH . C 3 HOH A 32 532 54 HOH HOH . C 3 HOH A 33 533 65 HOH HOH . C 3 HOH A 34 534 33 HOH HOH . C 3 HOH A 35 535 152 HOH HOH . C 3 HOH A 36 536 25 HOH HOH . C 3 HOH A 37 537 36 HOH HOH . C 3 HOH A 38 538 40 HOH HOH . C 3 HOH A 39 539 57 HOH HOH . C 3 HOH A 40 540 50 HOH HOH . C 3 HOH A 41 541 37 HOH HOH . C 3 HOH A 42 542 207 HOH HOH . C 3 HOH A 43 543 22 HOH HOH . C 3 HOH A 44 544 62 HOH HOH . C 3 HOH A 45 545 66 HOH HOH . C 3 HOH A 46 546 29 HOH HOH . C 3 HOH A 47 547 137 HOH HOH . C 3 HOH A 48 548 106 HOH HOH . C 3 HOH A 49 549 94 HOH HOH . C 3 HOH A 50 550 155 HOH HOH . C 3 HOH A 51 551 8 HOH HOH . C 3 HOH A 52 552 14 HOH HOH . C 3 HOH A 53 553 20 HOH HOH . C 3 HOH A 54 554 55 HOH HOH . C 3 HOH A 55 555 86 HOH HOH . C 3 HOH A 56 556 157 HOH HOH . C 3 HOH A 57 557 135 HOH HOH . C 3 HOH A 58 558 121 HOH HOH . C 3 HOH A 59 559 2 HOH HOH . C 3 HOH A 60 560 93 HOH HOH . C 3 HOH A 61 561 211 HOH HOH . C 3 HOH A 62 562 59 HOH HOH . C 3 HOH A 63 563 19 HOH HOH . C 3 HOH A 64 564 202 HOH HOH . C 3 HOH A 65 565 16 HOH HOH . C 3 HOH A 66 566 218 HOH HOH . C 3 HOH A 67 567 17 HOH HOH . C 3 HOH A 68 568 58 HOH HOH . C 3 HOH A 69 569 4 HOH HOH . C 3 HOH A 70 570 133 HOH HOH . C 3 HOH A 71 571 26 HOH HOH . C 3 HOH A 72 572 134 HOH HOH . C 3 HOH A 73 573 148 HOH HOH . C 3 HOH A 74 574 32 HOH HOH . C 3 HOH A 75 575 84 HOH HOH . C 3 HOH A 76 576 95 HOH HOH . C 3 HOH A 77 577 6 HOH HOH . C 3 HOH A 78 578 18 HOH HOH . C 3 HOH A 79 579 147 HOH HOH . C 3 HOH A 80 580 162 HOH HOH . C 3 HOH A 81 581 136 HOH HOH . C 3 HOH A 82 582 87 HOH HOH . C 3 HOH A 83 583 11 HOH HOH . C 3 HOH A 84 584 173 HOH HOH . C 3 HOH A 85 585 77 HOH HOH . C 3 HOH A 86 586 83 HOH HOH . C 3 HOH A 87 587 10 HOH HOH . C 3 HOH A 88 588 27 HOH HOH . C 3 HOH A 89 589 196 HOH HOH . C 3 HOH A 90 590 3 HOH HOH . C 3 HOH A 91 591 171 HOH HOH . C 3 HOH A 92 592 1 HOH HOH . C 3 HOH A 93 593 23 HOH HOH . C 3 HOH A 94 594 9 HOH HOH . C 3 HOH A 95 595 130 HOH HOH . C 3 HOH A 96 596 7 HOH HOH . C 3 HOH A 97 597 156 HOH HOH . C 3 HOH A 98 598 125 HOH HOH . C 3 HOH A 99 599 61 HOH HOH . C 3 HOH A 100 600 31 HOH HOH . C 3 HOH A 101 601 205 HOH HOH . C 3 HOH A 102 602 180 HOH HOH . C 3 HOH A 103 603 28 HOH HOH . C 3 HOH A 104 604 117 HOH HOH . C 3 HOH A 105 605 81 HOH HOH . C 3 HOH A 106 606 21 HOH HOH . C 3 HOH A 107 607 74 HOH HOH . C 3 HOH A 108 608 182 HOH HOH . C 3 HOH A 109 609 97 HOH HOH . C 3 HOH A 110 610 30 HOH HOH . C 3 HOH A 111 611 127 HOH HOH . C 3 HOH A 112 612 115 HOH HOH . C 3 HOH A 113 613 96 HOH HOH . C 3 HOH A 114 614 170 HOH HOH . C 3 HOH A 115 615 178 HOH HOH . C 3 HOH A 116 616 46 HOH HOH . C 3 HOH A 117 617 41 HOH HOH . C 3 HOH A 118 618 120 HOH HOH . C 3 HOH A 119 619 132 HOH HOH . C 3 HOH A 120 620 99 HOH HOH . C 3 HOH A 121 621 69 HOH HOH . C 3 HOH A 122 622 158 HOH HOH . C 3 HOH A 123 623 24 HOH HOH . C 3 HOH A 124 624 12 HOH HOH . C 3 HOH A 125 625 185 HOH HOH . C 3 HOH A 126 626 91 HOH HOH . C 3 HOH A 127 627 113 HOH HOH . C 3 HOH A 128 628 67 HOH HOH . C 3 HOH A 129 629 75 HOH HOH . C 3 HOH A 130 630 123 HOH HOH . C 3 HOH A 131 631 85 HOH HOH . C 3 HOH A 132 632 163 HOH HOH . C 3 HOH A 133 633 105 HOH HOH . C 3 HOH A 134 634 39 HOH HOH . C 3 HOH A 135 635 13 HOH HOH . C 3 HOH A 136 636 82 HOH HOH . C 3 HOH A 137 637 150 HOH HOH . C 3 HOH A 138 638 80 HOH HOH . C 3 HOH A 139 639 68 HOH HOH . C 3 HOH A 140 640 186 HOH HOH . C 3 HOH A 141 641 141 HOH HOH . C 3 HOH A 142 642 144 HOH HOH . C 3 HOH A 143 643 112 HOH HOH . C 3 HOH A 144 644 102 HOH HOH . C 3 HOH A 145 645 199 HOH HOH . C 3 HOH A 146 646 76 HOH HOH . C 3 HOH A 147 647 190 HOH HOH . C 3 HOH A 148 648 98 HOH HOH . C 3 HOH A 149 649 51 HOH HOH . C 3 HOH A 150 650 88 HOH HOH . C 3 HOH A 151 651 64 HOH HOH . C 3 HOH A 152 652 188 HOH HOH . C 3 HOH A 153 653 197 HOH HOH . C 3 HOH A 154 654 103 HOH HOH . C 3 HOH A 155 655 34 HOH HOH . C 3 HOH A 156 656 200 HOH HOH . C 3 HOH A 157 657 204 HOH HOH . C 3 HOH A 158 658 72 HOH HOH . C 3 HOH A 159 659 71 HOH HOH . C 3 HOH A 160 660 124 HOH HOH . C 3 HOH A 161 661 131 HOH HOH . C 3 HOH A 162 662 47 HOH HOH . C 3 HOH A 163 663 161 HOH HOH . C 3 HOH A 164 664 49 HOH HOH . C 3 HOH A 165 665 114 HOH HOH . C 3 HOH A 166 666 90 HOH HOH . C 3 HOH A 167 667 219 HOH HOH . C 3 HOH A 168 668 214 HOH HOH . C 3 HOH A 169 669 184 HOH HOH . C 3 HOH A 170 670 208 HOH HOH . C 3 HOH A 171 671 183 HOH HOH . C 3 HOH A 172 672 145 HOH HOH . C 3 HOH A 173 673 15 HOH HOH . C 3 HOH A 174 674 189 HOH HOH . C 3 HOH A 175 675 128 HOH HOH . C 3 HOH A 176 676 209 HOH HOH . C 3 HOH A 177 677 149 HOH HOH . C 3 HOH A 178 678 129 HOH HOH . C 3 HOH A 179 679 79 HOH HOH . C 3 HOH A 180 680 159 HOH HOH . C 3 HOH A 181 681 175 HOH HOH . C 3 HOH A 182 682 104 HOH HOH . C 3 HOH A 183 683 160 HOH HOH . C 3 HOH A 184 684 179 HOH HOH . C 3 HOH A 185 685 119 HOH HOH . C 3 HOH A 186 686 169 HOH HOH . C 3 HOH A 187 687 164 HOH HOH . C 3 HOH A 188 688 108 HOH HOH . C 3 HOH A 189 689 100 HOH HOH . C 3 HOH A 190 690 43 HOH HOH . C 3 HOH A 191 691 177 HOH HOH . C 3 HOH A 192 692 109 HOH HOH . C 3 HOH A 193 693 92 HOH HOH . C 3 HOH A 194 694 201 HOH HOH . C 3 HOH A 195 695 122 HOH HOH . C 3 HOH A 196 696 191 HOH HOH . C 3 HOH A 197 697 165 HOH HOH . C 3 HOH A 198 698 111 HOH HOH . C 3 HOH A 199 699 101 HOH HOH . C 3 HOH A 200 700 176 HOH HOH . C 3 HOH A 201 701 172 HOH HOH . C 3 HOH A 202 702 89 HOH HOH . C 3 HOH A 203 703 217 HOH HOH . C 3 HOH A 204 704 118 HOH HOH . C 3 HOH A 205 705 107 HOH HOH . C 3 HOH A 206 706 153 HOH HOH . C 3 HOH A 207 707 203 HOH HOH . C 3 HOH A 208 708 210 HOH HOH . C 3 HOH A 209 709 187 HOH HOH . C 3 HOH A 210 710 206 HOH HOH . C 3 HOH A 211 711 181 HOH HOH . C 3 HOH A 212 712 212 HOH HOH . C 3 HOH A 213 713 166 HOH HOH . C 3 HOH A 214 714 215 HOH HOH . C 3 HOH A 215 715 198 HOH HOH . C 3 HOH A 216 716 38 HOH HOH . C 3 HOH A 217 717 168 HOH HOH . C 3 HOH A 218 718 193 HOH HOH . C 3 HOH A 219 719 213 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C9 5E6 . . . B 2 21.569 -34.256 4.281 1 33.35 ? C9 5E6 401 A 1 HETATM 2 C C2 5E6 . . . B 2 23.692 -38.893 1.892 1 35.35 ? C2 5E6 401 A 1 HETATM 3 C C10 5E6 . . . B 2 21.196 -34.068 5.729 1 36.41 ? C10 5E6 401 A 1 HETATM 4 C C6 5E6 . . . B 2 23.595 -38.278 4.155 1 30.7 ? C6 5E6 401 A 1 HETATM 5 C C1 5E6 . . . B 2 23.751 -39.242 3.211 1 34.95 ? C1 5E6 401 A 1 HETATM 6 C C3 5E6 . . . B 2 23.451 -37.601 1.547 1 29.12 ? C3 5E6 401 A 1 HETATM 7 N N4 5E6 . . . B 2 23.321 -36.716 2.482 1 29.72 ? N4 5E6 401 A 1 HETATM 8 C C5 5E6 . . . B 2 23.388 -36.991 3.736 1 31.6 ? C5 5E6 401 A 1 HETATM 9 N N7 5E6 . . . B 2 23.263 -35.977 4.652 1 32.97 ? N7 5E6 401 A 1 HETATM 10 C C8 5E6 . . . B 2 23.027 -34.629 4.19 1 33.84 ? C8 5E6 401 A 1 HETATM 11 C C11 5E6 . . . B 2 22.003 -32.901 6.252 1 36.07 ? C11 5E6 401 A 1 HETATM 12 C C12 5E6 . . . B 2 23.504 -33.165 6.22 1 35.05 ? C12 5E6 401 A 1 HETATM 13 C C13 5E6 . . . B 2 23.926 -33.576 4.828 1 31.24 ? C13 5E6 401 A 1 HETATM 14 N N14 5E6 . . . B 2 24.263 -31.992 6.645 1 34.4 ? N14 5E6 401 A 1 HETATM 15 C C15 5E6 . . . B 2 23.392 -37.207 0.125 1 29.74 ? C15 5E6 401 A 1 HETATM 16 C C16 5E6 . . . B 2 23.008 -35.912 -0.389 1 26.67 ? C16 5E6 401 A 1 HETATM 17 C C17 5E6 . . . B 2 22.605 -34.711 0.16 1 27.95 ? C17 5E6 401 A 1 HETATM 18 C C18 5E6 . . . B 2 22.323 -33.654 -0.665 1 28.28 ? C18 5E6 401 A 1 HETATM 19 N N19 5E6 . . . B 2 22.454 -33.785 -1.955 1 30.02 ? N19 5E6 401 A 1 HETATM 20 C C20 5E6 . . . B 2 22.812 -34.894 -2.499 1 28.76 ? C20 5E6 401 A 1 HETATM 21 C C21 5E6 . . . B 2 23.117 -36 -1.755 1 27.8 ? C21 5E6 401 A 1 HETATM 22 N N22 5E6 . . . B 2 23.516 -37.243 -2.028 1 29.74 ? N22 5E6 401 A 1 HETATM 23 N N24 5E6 . . . B 2 23.677 -37.94 -0.882 1 28.18 ? N24 5E6 401 A 1 HETATM 24 C C25 5E6 . . . B 2 21.889 -32.351 -0.136 1 25.08 ? C25 5E6 401 A 1 HETATM 25 C C26 5E6 . . . B 2 22.011 -32.016 1.201 1 21.68 ? C26 5E6 401 A 1 HETATM 26 C C27 5E6 . . . B 2 21.59 -30.786 1.609 1 20.74 ? C27 5E6 401 A 1 HETATM 27 C C28 5E6 . . . B 2 21.076 -29.927 0.681 1 27.06 ? C28 5E6 401 A 1 HETATM 28 N N29 5E6 . . . B 2 20.973 -30.268 -0.567 1 30.53 ? N29 5E6 401 A 1 HETATM 29 C C30 5E6 . . . B 2 21.359 -31.418 -0.997 1 26.79 ? C30 5E6 401 A 1 HETATM 30 H H23 5E6 . . . B 2 23.674 -37.592 -2.912 1 35.69 ? H23 5E6 401 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 30 #