data_5DID # _model_server_result.job_id eWVCd4V_GuEe6hfvbW7cvQ _model_server_result.datetime_utc '2024-10-12 16:33:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5did # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":601}' # _entry.id 5DID # _exptl.entry_id 5DID _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.326 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1S,3aR,5S,7aS)-5-(2,3-difluoro-4-hydroxyphenyl)-7a-methyloctahydro-1H-inden-1-ol _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.02 _cell.angle_gamma 90 _cell.entry_id 5DID _cell.length_a 55.942 _cell.length_b 82.99 _cell.length_c 58.273 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DID _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C16 H20 F2 O2' _chem_comp.formula_weight 282.326 _chem_comp.id 5CK _chem_comp.mon_nstd_flag . _chem_comp.name (1S,3aR,5S,7aS)-5-(2,3-difluoro-4-hydroxyphenyl)-7a-methyloctahydro-1H-inden-1-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C07 C08 5CK sing 1 n n C07 C06 5CK sing 2 n n O01 C08 5CK sing 3 n n C08 C03 5CK sing 4 n n C06 C02 5CK sing 5 n n C03 C02 5CK sing 6 n n C03 C04 5CK sing 7 n n C03 C09 5CK sing 8 n n C02 C01 5CK sing 9 n n C04 C05 5CK sing 10 n n C01 C10 5CK sing 11 n n C05 C10 5CK sing 12 n n C10 C12 5CK sing 13 n n F01 C13 5CK sing 14 n n C12 C13 5CK doub 15 n y C12 C11 5CK sing 16 n y C13 C14 5CK sing 17 n y C11 C16 5CK doub 18 n y C14 F02 5CK sing 19 n n C14 C15 5CK doub 20 n y C16 C15 5CK sing 21 n y C15 O02 5CK sing 22 n n C01 H1 5CK sing 23 n n C01 H2 5CK sing 24 n n C02 H3 5CK sing 25 n n C04 H4 5CK sing 26 n n C04 H5 5CK sing 27 n n C05 H6 5CK sing 28 n n C05 H7 5CK sing 29 n n C06 H8 5CK sing 30 n n C06 H9 5CK sing 31 n n C07 H10 5CK sing 32 n n C07 H11 5CK sing 33 n n C08 H12 5CK sing 34 n n O01 H13 5CK sing 35 n n C09 H14 5CK sing 36 n n C09 H15 5CK sing 37 n n C09 H16 5CK sing 38 n n O02 H17 5CK sing 39 n n C10 H18 5CK sing 40 n n C11 H19 5CK sing 41 n n C16 H20 5CK sing 42 n n # _atom_sites.entry_id 5DID _atom_sites.fract_transf_matrix[1][1] 0.017876 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006162 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01205 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018152 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 5CK A 1 601 1 5CK UNK . F 3 5CK B 1 601 1 5CK UNK . G 4 HOH A 1 701 133 HOH HOH . G 4 HOH A 2 702 128 HOH HOH . G 4 HOH A 3 703 3 HOH HOH . G 4 HOH A 4 704 73 HOH HOH . G 4 HOH A 5 705 150 HOH HOH . G 4 HOH A 6 706 136 HOH HOH . G 4 HOH A 7 707 23 HOH HOH . G 4 HOH A 8 708 52 HOH HOH . G 4 HOH A 9 709 79 HOH HOH . G 4 HOH A 10 710 172 HOH HOH . G 4 HOH A 11 711 145 HOH HOH . G 4 HOH A 12 712 18 HOH HOH . G 4 HOH A 13 713 69 HOH HOH . G 4 HOH A 14 714 15 HOH HOH . G 4 HOH A 15 715 39 HOH HOH . G 4 HOH A 16 716 143 HOH HOH . G 4 HOH A 17 717 10 HOH HOH . G 4 HOH A 18 718 12 HOH HOH . G 4 HOH A 19 719 1 HOH HOH . G 4 HOH A 20 720 13 HOH HOH . G 4 HOH A 21 721 160 HOH HOH . G 4 HOH A 22 722 157 HOH HOH . G 4 HOH A 23 723 2 HOH HOH . G 4 HOH A 24 724 14 HOH HOH . G 4 HOH A 25 725 25 HOH HOH . G 4 HOH A 26 726 22 HOH HOH . G 4 HOH A 27 727 124 HOH HOH . G 4 HOH A 28 728 80 HOH HOH . G 4 HOH A 29 729 75 HOH HOH . G 4 HOH A 30 730 91 HOH HOH . G 4 HOH A 31 731 46 HOH HOH . G 4 HOH A 32 732 24 HOH HOH . G 4 HOH A 33 733 71 HOH HOH . G 4 HOH A 34 734 99 HOH HOH . G 4 HOH A 35 735 131 HOH HOH . G 4 HOH A 36 736 20 HOH HOH . G 4 HOH A 37 737 29 HOH HOH . G 4 HOH A 38 738 34 HOH HOH . G 4 HOH A 39 739 49 HOH HOH . G 4 HOH A 40 740 57 HOH HOH . G 4 HOH A 41 741 154 HOH HOH . G 4 HOH A 42 742 122 HOH HOH . G 4 HOH A 43 743 137 HOH HOH . G 4 HOH A 44 744 28 HOH HOH . G 4 HOH A 45 745 142 HOH HOH . G 4 HOH A 46 746 119 HOH HOH . G 4 HOH A 47 747 101 HOH HOH . G 4 HOH A 48 748 109 HOH HOH . G 4 HOH A 49 749 5 HOH HOH . G 4 HOH A 50 750 6 HOH HOH . G 4 HOH A 51 751 16 HOH HOH . G 4 HOH A 52 752 102 HOH HOH . G 4 HOH A 53 753 62 HOH HOH . G 4 HOH A 54 754 171 HOH HOH . G 4 HOH A 55 755 26 HOH HOH . G 4 HOH A 56 756 66 HOH HOH . G 4 HOH A 57 757 68 HOH HOH . G 4 HOH A 58 758 93 HOH HOH . G 4 HOH A 59 759 116 HOH HOH . G 4 HOH A 60 760 95 HOH HOH . G 4 HOH A 61 761 53 HOH HOH . G 4 HOH A 62 762 139 HOH HOH . G 4 HOH A 63 763 141 HOH HOH . G 4 HOH A 64 764 173 HOH HOH . G 4 HOH A 65 765 59 HOH HOH . G 4 HOH A 66 766 111 HOH HOH . G 4 HOH A 67 767 92 HOH HOH . G 4 HOH A 68 768 44 HOH HOH . G 4 HOH A 69 769 132 HOH HOH . G 4 HOH A 70 770 74 HOH HOH . G 4 HOH A 71 771 64 HOH HOH . G 4 HOH A 72 772 170 HOH HOH . G 4 HOH A 73 773 149 HOH HOH . G 4 HOH A 74 774 51 HOH HOH . G 4 HOH A 75 775 58 HOH HOH . G 4 HOH A 76 776 81 HOH HOH . G 4 HOH A 77 777 165 HOH HOH . G 4 HOH A 78 778 54 HOH HOH . G 4 HOH A 79 779 106 HOH HOH . G 4 HOH A 80 780 144 HOH HOH . G 4 HOH A 81 781 159 HOH HOH . G 4 HOH A 82 782 162 HOH HOH . G 4 HOH A 83 783 36 HOH HOH . G 4 HOH A 84 784 97 HOH HOH . G 4 HOH A 85 785 98 HOH HOH . G 4 HOH A 86 786 32 HOH HOH . G 4 HOH A 87 787 134 HOH HOH . G 4 HOH A 88 788 35 HOH HOH . G 4 HOH A 89 789 127 HOH HOH . G 4 HOH A 90 790 38 HOH HOH . G 4 HOH A 91 791 37 HOH HOH . G 4 HOH A 92 792 108 HOH HOH . G 4 HOH A 93 793 151 HOH HOH . G 4 HOH A 94 794 123 HOH HOH . G 4 HOH A 95 795 156 HOH HOH . G 4 HOH A 96 796 140 HOH HOH . G 4 HOH A 97 797 163 HOH HOH . G 4 HOH A 98 798 138 HOH HOH . G 4 HOH A 99 799 148 HOH HOH . G 4 HOH A 100 800 126 HOH HOH . G 4 HOH A 101 801 153 HOH HOH . G 4 HOH A 102 802 65 HOH HOH . G 4 HOH A 103 803 158 HOH HOH . G 4 HOH A 104 804 43 HOH HOH . H 4 HOH B 1 701 87 HOH HOH . H 4 HOH B 2 702 8 HOH HOH . H 4 HOH B 3 703 78 HOH HOH . H 4 HOH B 4 704 112 HOH HOH . H 4 HOH B 5 705 115 HOH HOH . H 4 HOH B 6 706 147 HOH HOH . H 4 HOH B 7 707 135 HOH HOH . H 4 HOH B 8 708 19 HOH HOH . H 4 HOH B 9 709 155 HOH HOH . H 4 HOH B 10 710 161 HOH HOH . H 4 HOH B 11 711 77 HOH HOH . H 4 HOH B 12 712 55 HOH HOH . H 4 HOH B 13 713 21 HOH HOH . H 4 HOH B 14 714 9 HOH HOH . H 4 HOH B 15 715 31 HOH HOH . H 4 HOH B 16 716 40 HOH HOH . H 4 HOH B 17 717 129 HOH HOH . H 4 HOH B 18 718 83 HOH HOH . H 4 HOH B 19 719 42 HOH HOH . H 4 HOH B 20 720 56 HOH HOH . H 4 HOH B 21 721 11 HOH HOH . H 4 HOH B 22 722 130 HOH HOH . H 4 HOH B 23 723 4 HOH HOH . H 4 HOH B 24 724 33 HOH HOH . H 4 HOH B 25 725 27 HOH HOH . H 4 HOH B 26 726 63 HOH HOH . H 4 HOH B 27 727 94 HOH HOH . H 4 HOH B 28 728 84 HOH HOH . H 4 HOH B 29 729 47 HOH HOH . H 4 HOH B 30 730 89 HOH HOH . H 4 HOH B 31 731 105 HOH HOH . H 4 HOH B 32 732 85 HOH HOH . H 4 HOH B 33 733 76 HOH HOH . H 4 HOH B 34 734 41 HOH HOH . H 4 HOH B 35 735 114 HOH HOH . H 4 HOH B 36 736 61 HOH HOH . H 4 HOH B 37 737 96 HOH HOH . H 4 HOH B 38 738 67 HOH HOH . H 4 HOH B 39 739 146 HOH HOH . H 4 HOH B 40 740 50 HOH HOH . H 4 HOH B 41 741 113 HOH HOH . H 4 HOH B 42 742 107 HOH HOH . H 4 HOH B 43 743 125 HOH HOH . H 4 HOH B 44 744 70 HOH HOH . H 4 HOH B 45 745 152 HOH HOH . H 4 HOH B 46 746 90 HOH HOH . H 4 HOH B 47 747 60 HOH HOH . H 4 HOH B 48 748 118 HOH HOH . H 4 HOH B 49 749 30 HOH HOH . H 4 HOH B 50 750 117 HOH HOH . H 4 HOH B 51 751 82 HOH HOH . H 4 HOH B 52 752 45 HOH HOH . H 4 HOH B 53 753 72 HOH HOH . H 4 HOH B 54 754 100 HOH HOH . H 4 HOH B 55 755 88 HOH HOH . H 4 HOH B 56 756 7 HOH HOH . H 4 HOH B 57 757 104 HOH HOH . H 4 HOH B 58 758 168 HOH HOH . H 4 HOH B 59 759 48 HOH HOH . H 4 HOH B 60 760 110 HOH HOH . H 4 HOH B 61 761 86 HOH HOH . H 4 HOH B 62 762 169 HOH HOH . H 4 HOH B 63 763 121 HOH HOH . H 4 HOH B 64 764 17 HOH HOH . I 4 HOH C 1 701 120 HOH HOH . I 4 HOH C 2 702 164 HOH HOH . I 4 HOH C 3 703 103 HOH HOH . J 4 HOH D 1 701 166 HOH HOH . J 4 HOH D 2 702 167 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 5CK . . . F 3 2.87 3.354 -6.279 1 32.13 ? C01 5CK 601 B 1 HETATM 2 C C02 5CK . . . F 3 1.403 3.57 -5.858 1 34.45 ? C02 5CK 601 B 1 HETATM 3 C C03 5CK . . . F 3 0.827 4.951 -6.242 1 33.76 ? C03 5CK 601 B 1 HETATM 4 C C04 5CK . . . F 3 1.81 6.11 -6 1 34.27 ? C04 5CK 601 B 1 HETATM 5 C C05 5CK . . . F 3 3.215 5.861 -6.55 1 31.58 ? C05 5CK 601 B 1 HETATM 6 C C06 5CK . . . F 3 1.27 3.534 -4.32 1 33.75 ? C06 5CK 601 B 1 HETATM 7 C C07 5CK . . . F 3 0.108 4.484 -3.977 1 33.79 ? C07 5CK 601 B 1 HETATM 8 C C08 5CK . . . F 3 -0.388 5.026 -5.319 1 31.85 ? C08 5CK 601 B 1 HETATM 9 O O01 5CK . . . F 3 -1.484 4.297 -5.818 1 31.4 ? O01 5CK 601 B 1 HETATM 10 C C09 5CK . . . F 3 0.404 4.969 -7.73 1 32.55 ? C09 5CK 601 B 1 HETATM 11 O O02 5CK . . . F 3 9.033 3.951 -8.205 1 31.22 ? O02 5CK 601 B 1 HETATM 12 F F01 5CK . . . F 3 6.187 4.772 -4.62 1 40.29 ? F01 5CK 601 B 1 HETATM 13 F F02 5CK . . . F 3 8.614 4.502 -5.62 1 33.29 ? F02 5CK 601 B 1 HETATM 14 C C10 5CK . . . F 3 3.841 4.533 -6.101 1 32.54 ? C10 5CK 601 B 1 HETATM 15 C C11 5CK . . . F 3 5.449 4.091 -7.995 1 35.77 ? C11 5CK 601 B 1 HETATM 16 C C12 5CK . . . F 3 5.236 4.362 -6.693 1 35.54 ? C12 5CK 601 B 1 HETATM 17 C C13 5CK . . . F 3 6.322 4.501 -5.912 1 35.99 ? C13 5CK 601 B 1 HETATM 18 C C14 5CK . . . F 3 7.562 4.365 -6.412 1 32.44 ? C14 5CK 601 B 1 HETATM 19 C C15 5CK . . . F 3 7.77 4.089 -7.712 1 34.81 ? C15 5CK 601 B 1 HETATM 20 C C16 5CK . . . F 3 6.687 3.954 -8.496 1 36.46 ? C16 5CK 601 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 20 #