data_5DIQ # _model_server_result.job_id ugk9u0tpcANvMM-UFC-IEA _model_server_result.datetime_utc '2025-01-10 14:29:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5diq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 5DIQ # _exptl.entry_id 5DIQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5DIQ _cell.length_a 111.629 _cell.length_b 111.629 _cell.length_c 76.835 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DIQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 111.629 111.629 38.4175 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 240 F ASP 243 1_555 E MG MG . F MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc2 E MG MG . F MG 404 1_555 G O HOH . F HOH 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc3 E MG MG . F MG 404 1_555 G O HOH . F HOH 545 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.943 ? metalc ? metalc4 E MG MG . F MG 404 1_555 G O HOH . F HOH 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc5 E MG MG . F MG 404 1_555 G O HOH . F HOH 653 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc6 E MG MG . F MG 404 1_555 G O HOH . F HOH 662 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5DIQ _atom_sites.fract_transf_matrix[1][1] 0.008958 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008958 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013015 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL F 1 401 1 GOL GOL . C 2 GOL F 1 402 2 GOL GOL . D 3 5B9 F 1 403 1 5B9 LI1 . E 4 MG F 1 404 1 MG MG2 . F 5 PO4 F 1 405 1 PO4 PO4 . G 6 HOH F 1 501 4 HOH HOH . G 6 HOH F 2 502 86 HOH HOH . G 6 HOH F 3 503 7 HOH HOH . G 6 HOH F 4 504 32 HOH HOH . G 6 HOH F 5 505 2 HOH HOH . G 6 HOH F 6 506 1 HOH HOH . G 6 HOH F 7 507 19 HOH HOH . G 6 HOH F 8 508 68 HOH HOH . G 6 HOH F 9 509 30 HOH HOH . G 6 HOH F 10 510 82 HOH HOH . G 6 HOH F 11 511 142 HOH HOH . G 6 HOH F 12 512 14 HOH HOH . G 6 HOH F 13 513 6 HOH HOH . G 6 HOH F 14 514 148 HOH HOH . G 6 HOH F 15 515 20 HOH HOH . G 6 HOH F 16 516 150 HOH HOH . G 6 HOH F 17 517 27 HOH HOH . G 6 HOH F 18 518 90 HOH HOH . G 6 HOH F 19 519 25 HOH HOH . G 6 HOH F 20 520 66 HOH HOH . G 6 HOH F 21 521 67 HOH HOH . G 6 HOH F 22 522 10 HOH HOH . G 6 HOH F 23 523 75 HOH HOH . G 6 HOH F 24 524 81 HOH HOH . G 6 HOH F 25 525 183 HOH HOH . G 6 HOH F 26 526 94 HOH HOH . G 6 HOH F 27 527 103 HOH HOH . G 6 HOH F 28 528 158 HOH HOH . G 6 HOH F 29 529 87 HOH HOH . G 6 HOH F 30 530 33 HOH HOH . G 6 HOH F 31 531 48 HOH HOH . G 6 HOH F 32 532 169 HOH HOH . G 6 HOH F 33 533 9 HOH HOH . G 6 HOH F 34 534 8 HOH HOH . G 6 HOH F 35 535 71 HOH HOH . G 6 HOH F 36 536 84 HOH HOH . G 6 HOH F 37 537 44 HOH HOH . G 6 HOH F 38 538 15 HOH HOH . G 6 HOH F 39 539 55 HOH HOH . G 6 HOH F 40 540 16 HOH HOH . G 6 HOH F 41 541 91 HOH HOH . G 6 HOH F 42 542 85 HOH HOH . G 6 HOH F 43 543 58 HOH HOH . G 6 HOH F 44 544 173 HOH HOH . G 6 HOH F 45 545 118 HOH HOH . G 6 HOH F 46 546 74 HOH HOH . G 6 HOH F 47 547 22 HOH HOH . G 6 HOH F 48 548 147 HOH HOH . G 6 HOH F 49 549 157 HOH HOH . G 6 HOH F 50 550 198 HOH HOH . G 6 HOH F 51 551 43 HOH HOH . G 6 HOH F 52 552 37 HOH HOH . G 6 HOH F 53 553 119 HOH HOH . G 6 HOH F 54 554 52 HOH HOH . G 6 HOH F 55 555 49 HOH HOH . G 6 HOH F 56 556 143 HOH HOH . G 6 HOH F 57 557 26 HOH HOH . G 6 HOH F 58 558 188 HOH HOH . G 6 HOH F 59 559 36 HOH HOH . G 6 HOH F 60 560 65 HOH HOH . G 6 HOH F 61 561 23 HOH HOH . G 6 HOH F 62 562 77 HOH HOH . G 6 HOH F 63 563 178 HOH HOH . G 6 HOH F 64 564 61 HOH HOH . G 6 HOH F 65 565 101 HOH HOH . G 6 HOH F 66 566 125 HOH HOH . G 6 HOH F 67 567 63 HOH HOH . G 6 HOH F 68 568 123 HOH HOH . G 6 HOH F 69 569 79 HOH HOH . G 6 HOH F 70 570 177 HOH HOH . G 6 HOH F 71 571 99 HOH HOH . G 6 HOH F 72 572 122 HOH HOH . G 6 HOH F 73 573 98 HOH HOH . G 6 HOH F 74 574 161 HOH HOH . G 6 HOH F 75 575 72 HOH HOH . G 6 HOH F 76 576 39 HOH HOH . G 6 HOH F 77 577 116 HOH HOH . G 6 HOH F 78 578 93 HOH HOH . G 6 HOH F 79 579 53 HOH HOH . G 6 HOH F 80 580 31 HOH HOH . G 6 HOH F 81 581 18 HOH HOH . G 6 HOH F 82 582 165 HOH HOH . G 6 HOH F 83 583 134 HOH HOH . G 6 HOH F 84 584 51 HOH HOH . G 6 HOH F 85 585 172 HOH HOH . G 6 HOH F 86 586 126 HOH HOH . G 6 HOH F 87 587 29 HOH HOH . G 6 HOH F 88 588 35 HOH HOH . G 6 HOH F 89 589 132 HOH HOH . G 6 HOH F 90 590 106 HOH HOH . G 6 HOH F 91 591 57 HOH HOH . G 6 HOH F 92 592 38 HOH HOH . G 6 HOH F 93 593 144 HOH HOH . G 6 HOH F 94 594 159 HOH HOH . G 6 HOH F 95 595 12 HOH HOH . G 6 HOH F 96 596 45 HOH HOH . G 6 HOH F 97 597 100 HOH HOH . G 6 HOH F 98 598 11 HOH HOH . G 6 HOH F 99 599 113 HOH HOH . G 6 HOH F 100 600 121 HOH HOH . G 6 HOH F 101 601 145 HOH HOH . G 6 HOH F 102 602 135 HOH HOH . G 6 HOH F 103 603 140 HOH HOH . G 6 HOH F 104 604 131 HOH HOH . G 6 HOH F 105 605 168 HOH HOH . G 6 HOH F 106 606 5 HOH HOH . G 6 HOH F 107 607 133 HOH HOH . G 6 HOH F 108 608 108 HOH HOH . G 6 HOH F 109 609 56 HOH HOH . G 6 HOH F 110 610 107 HOH HOH . G 6 HOH F 111 611 137 HOH HOH . G 6 HOH F 112 612 83 HOH HOH . G 6 HOH F 113 613 88 HOH HOH . G 6 HOH F 114 614 28 HOH HOH . G 6 HOH F 115 615 42 HOH HOH . G 6 HOH F 116 616 163 HOH HOH . G 6 HOH F 117 617 24 HOH HOH . G 6 HOH F 118 618 110 HOH HOH . G 6 HOH F 119 619 151 HOH HOH . G 6 HOH F 120 620 199 HOH HOH . G 6 HOH F 121 621 114 HOH HOH . G 6 HOH F 122 622 175 HOH HOH . G 6 HOH F 123 623 136 HOH HOH . G 6 HOH F 124 624 162 HOH HOH . G 6 HOH F 125 625 128 HOH HOH . G 6 HOH F 126 626 34 HOH HOH . G 6 HOH F 127 627 109 HOH HOH . G 6 HOH F 128 628 171 HOH HOH . G 6 HOH F 129 629 47 HOH HOH . G 6 HOH F 130 630 139 HOH HOH . G 6 HOH F 131 631 186 HOH HOH . G 6 HOH F 132 632 190 HOH HOH . G 6 HOH F 133 633 92 HOH HOH . G 6 HOH F 134 634 167 HOH HOH . G 6 HOH F 135 635 152 HOH HOH . G 6 HOH F 136 636 156 HOH HOH . G 6 HOH F 137 637 112 HOH HOH . G 6 HOH F 138 638 89 HOH HOH . G 6 HOH F 139 639 124 HOH HOH . G 6 HOH F 140 640 40 HOH HOH . G 6 HOH F 141 641 73 HOH HOH . G 6 HOH F 142 642 96 HOH HOH . G 6 HOH F 143 643 13 HOH HOH . G 6 HOH F 144 644 105 HOH HOH . G 6 HOH F 145 645 181 HOH HOH . G 6 HOH F 146 646 115 HOH HOH . G 6 HOH F 147 647 3 HOH HOH . G 6 HOH F 148 648 95 HOH HOH . G 6 HOH F 149 649 164 HOH HOH . G 6 HOH F 150 650 130 HOH HOH . G 6 HOH F 151 651 174 HOH HOH . G 6 HOH F 152 652 187 HOH HOH . G 6 HOH F 153 653 146 HOH HOH . G 6 HOH F 154 654 185 HOH HOH . G 6 HOH F 155 655 153 HOH HOH . G 6 HOH F 156 656 154 HOH HOH . G 6 HOH F 157 657 129 HOH HOH . G 6 HOH F 158 658 138 HOH HOH . G 6 HOH F 159 659 195 HOH HOH . G 6 HOH F 160 660 50 HOH HOH . G 6 HOH F 161 661 192 HOH HOH . G 6 HOH F 162 662 60 HOH HOH . G 6 HOH F 163 663 17 HOH HOH . G 6 HOH F 164 664 191 HOH HOH . G 6 HOH F 165 665 189 HOH HOH . G 6 HOH F 166 666 182 HOH HOH . G 6 HOH F 167 667 200 HOH HOH . G 6 HOH F 168 668 117 HOH HOH . G 6 HOH F 169 669 196 HOH HOH . G 6 HOH F 170 670 46 HOH HOH . G 6 HOH F 171 671 21 HOH HOH . G 6 HOH F 172 672 64 HOH HOH . G 6 HOH F 173 673 78 HOH HOH . G 6 HOH F 174 674 160 HOH HOH . G 6 HOH F 175 675 176 HOH HOH . G 6 HOH F 176 676 193 HOH HOH . G 6 HOH F 177 677 111 HOH HOH . G 6 HOH F 178 678 197 HOH HOH . G 6 HOH F 179 679 102 HOH HOH . G 6 HOH F 180 680 59 HOH HOH . G 6 HOH F 181 681 70 HOH HOH . G 6 HOH F 182 682 179 HOH HOH . G 6 HOH F 183 683 166 HOH HOH . G 6 HOH F 184 684 62 HOH HOH . G 6 HOH F 185 685 54 HOH HOH . G 6 HOH F 186 686 97 HOH HOH . G 6 HOH F 187 687 155 HOH HOH . G 6 HOH F 188 688 120 HOH HOH . G 6 HOH F 189 689 170 HOH HOH . G 6 HOH F 190 690 41 HOH HOH . G 6 HOH F 191 691 76 HOH HOH . G 6 HOH F 192 692 69 HOH HOH . G 6 HOH F 193 693 194 HOH HOH . G 6 HOH F 194 694 180 HOH HOH . G 6 HOH F 195 695 104 HOH HOH . G 6 HOH F 196 696 127 HOH HOH . G 6 HOH F 197 697 149 HOH HOH . G 6 HOH F 198 698 141 HOH HOH . G 6 HOH F 199 699 184 HOH HOH . G 6 HOH F 200 700 80 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 4 _atom_site.Cartn_x 14.885 _atom_site.Cartn_y 71.833 _atom_site.Cartn_z 31.996 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 51.8 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 404 _atom_site.auth_asym_id F _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #