data_5DIR
#
_model_server_result.job_id            aKCwHFSBYb-oPnIDMoNbRw 
_model_server_result.datetime_utc      '2024-11-23 21:15:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5dir 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":204}' 
#
_entry.id    5DIR 
#
_exptl.entry_id    5DIR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    24 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     3.4.23.36 
#
_cell.angle_alpha         90 
_cell.angle_beta          96.92 
_cell.angle_gamma         90 
_cell.entry_id            5DIR 
_cell.length_a            112.48 
_cell.length_b            105.88 
_cell.length_c            85.39 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5DIR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,I,J,K,L,M,N,GA 1 1 
B,H,O,P,Q,R,S,T,U,HA 2 1 
C,F,V,W,X,Y,EA,FA,IA 3 1 
D,G,Z,AA,BA,CA,DA,JA 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
? 3 N N N 
? 3 O N N 
? 3 P N N 
? 3 Q N N 
? 3 R N N 
? 3 S N N 
? 3 T N N 
? 3 U N N 
? 3 V N N 
? 3 W N N 
? 3 X N N 
? 3 Y N N 
? 3 Z N N 
? 3 AA N N 
? 3 BA N N 
? 3 CA N N 
? 3 DA N N 
? 3 EA N N 
? 3 FA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 E C MLE 1 E MLE 201 1_555 E N IIL 2 E IIL 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale2 E N MLE 1 E MLE 201 1_555 E C 5BV 5 E 5BV 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? 
covale ? covale3 E C IIL 2 E IIL 202 1_555 E N SER 3 E SER 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale4 E C SER 3 E SER 203 1_555 E N ALO 4 E ALO 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
covale ? covale5 E C ALO 4 E ALO 204 1_555 E N 5BV 5 E 5BV 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.31 ? 
covale ? covale6 F C MLE 1 F MLE 201 1_555 F N IIL 2 F IIL 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale7 F N MLE 1 F MLE 201 1_555 F C 5BV 5 F 5BV 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? 
covale ? covale8 F C IIL 2 F IIL 202 1_555 F N SER 3 F SER 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale9 F C SER 3 F SER 203 1_555 F N ALO 4 F ALO 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale10 F C ALO 4 F ALO 204 1_555 F N 5BV 5 F 5BV 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? 
covale ? covale11 G C MLE 1 G MLE 201 1_555 G N IIL 2 G IIL 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale12 G N MLE 1 G MLE 201 1_555 G C 5BV 5 G 5BV 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? 
covale ? covale13 G C IIL 2 G IIL 202 1_555 G N SER 3 G SER 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale14 G C SER 3 G SER 203 1_555 G N ALO 4 G ALO 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale15 G C ALO 4 G ALO 204 1_555 G N 5BV 5 G 5BV 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? 
covale ? covale16 H C MLE 1 H MLE 201 1_555 H N IIL 2 H IIL 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? 
covale ? covale17 H N MLE 1 H MLE 201 1_555 H C 5BV 5 H 5BV 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? 
covale ? covale18 H C IIL 2 H IIL 202 1_555 H N SER 3 H SER 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale19 H C SER 3 H SER 203 1_555 H N ALO 4 H ALO 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale20 H C ALO 4 H ALO 204 1_555 H N 5BV 5 H 5BV 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                OLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Oleoyl-R-glycerol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 C17 OLC sing 324 n n 
C10 C9 OLC doub 325 n n 
C10 C11 OLC sing 326 n n 
C9 C8 OLC sing 327 n n 
C17 C16 OLC sing 328 z n 
C11 C12 OLC sing 329 n n 
C8 C7 OLC sing 330 n n 
C24 C22 OLC sing 331 n n 
C24 O25 OLC sing 332 n n 
C16 C15 OLC sing 333 n n 
C12 C13 OLC sing 334 n n 
C7 C6 OLC sing 335 n n 
C15 C14 OLC sing 336 n n 
C13 C14 OLC sing 337 n n 
C6 C5 OLC sing 338 n n 
C5 C4 OLC sing 339 n n 
C4 C3 OLC sing 340 n n 
C3 C2 OLC sing 341 n n 
C2 C1 OLC sing 342 n n 
C21 C22 OLC sing 343 n n 
C21 O20 OLC sing 344 n n 
C1 O19 OLC doub 345 n n 
C1 O20 OLC sing 346 n n 
C22 O23 OLC sing 347 n n 
C18 H18 OLC sing 348 n n 
C18 H18A OLC sing 349 n n 
C18 H18B OLC sing 350 n n 
C10 H10 OLC sing 351 n n 
C9 H9 OLC sing 352 n n 
C17 H17 OLC sing 353 n n 
C17 H17A OLC sing 354 n n 
C11 H11 OLC sing 355 n n 
C11 H11A OLC sing 356 n n 
C8 H8 OLC sing 357 n n 
C8 H8A OLC sing 358 n n 
C24 H24 OLC sing 359 n n 
C24 H24A OLC sing 360 n n 
C16 H16 OLC sing 361 n n 
C16 H16A OLC sing 362 n n 
C12 H12 OLC sing 363 n n 
C12 H12A OLC sing 364 n n 
C7 H7 OLC sing 365 n n 
C7 H7A OLC sing 366 n n 
C15 H15 OLC sing 367 n n 
C15 H15A OLC sing 368 n n 
C13 H13 OLC sing 369 n n 
C13 H13A OLC sing 370 n n 
C6 H6 OLC sing 371 n n 
C6 H6A OLC sing 372 n n 
C14 H14 OLC sing 373 n n 
C14 H14A OLC sing 374 n n 
C5 H5 OLC sing 375 n n 
C5 H5A OLC sing 376 n n 
C4 H4 OLC sing 377 n n 
C4 H4A OLC sing 378 n n 
C3 H3 OLC sing 379 n n 
C3 H3A OLC sing 380 n n 
C2 H2 OLC sing 381 n n 
C2 H2A OLC sing 382 n n 
C21 H21 OLC sing 383 n n 
C21 H21A OLC sing 384 n n 
C22 H22 OLC sing 385 n n 
O25 HO25 OLC sing 386 n n 
O23 HO23 OLC sing 387 n n 
#
_atom_sites.entry_id                     5DIR 
_atom_sites.fract_transf_matrix[1][1]    0.00889 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001079 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009445 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011797 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 OLC A 1 201 301 OLC OLC . 
J 3 OLC A 1 202 302 OLC OLC . 
K 3 OLC A 1 203 303 OLC OLC . 
L 3 OLC A 1 204 304 OLC OLC . 
M 3 OLC A 1 205 305 OLC OLC . 
N 3 OLC A 1 206 306 OLC OLC . 
O 3 OLC B 1 201 301 OLC OLC . 
P 3 OLC B 1 202 302 OLC OLC . 
Q 3 OLC B 1 203 303 OLC OLC . 
R 3 OLC B 1 204 304 OLC OLC . 
S 3 OLC B 1 205 305 OLC OLC . 
T 3 OLC B 1 206 306 OLC OLC . 
U 3 OLC B 1 207 307 OLC OLC . 
V 3 OLC C 1 201 303 OLC OLC . 
W 3 OLC C 1 202 304 OLC OLC . 
X 3 OLC C 1 203 305 OLC OLC . 
Y 3 OLC C 1 204 306 OLC OLC . 
Z 3 OLC D 1 201 301 OLC OLC . 
AA 3 OLC D 1 202 302 OLC OLC . 
BA 3 OLC D 1 203 303 OLC OLC . 
CA 3 OLC D 1 204 304 OLC OLC . 
DA 3 OLC D 1 205 305 OLC OLC . 
EA 3 OLC F 1 301 301 OLC OLC . 
FA 3 OLC F 1 302 302 OLC OLC . 
GA 4 HOH A 1 301 14 HOH HOH . 
GA 4 HOH A 2 302 9 HOH HOH . 
GA 4 HOH A 3 303 3 HOH HOH . 
GA 4 HOH A 4 304 4 HOH HOH . 
HA 4 HOH B 1 301 12 HOH HOH . 
HA 4 HOH B 2 302 16 HOH HOH . 
IA 4 HOH C 1 301 7 HOH HOH . 
IA 4 HOH C 2 302 5 HOH HOH . 
IA 4 HOH C 3 303 15 HOH HOH . 
IA 4 HOH C 4 304 2 HOH HOH . 
IA 4 HOH C 5 305 10 HOH HOH . 
IA 4 HOH C 6 306 6 HOH HOH . 
JA 4 HOH D 1 301 11 HOH HOH . 
JA 4 HOH D 2 302 1 HOH HOH . 
JA 4 HOH D 3 303 13 HOH HOH . 
JA 4 HOH D 4 304 8 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C18 OLC . . . L 3 -36.217 -5.765 6.729 1 79.39 ? C18 OLC 204 A 1 
HETATM 2 C C10 OLC . . . L 3 -35.79 -14.34 4.847 1 87.98 ? C10 OLC 204 A 1 
HETATM 3 C C9 OLC . . . L 3 -35.266 -15.58 4.881 1 93.75 ? C9 OLC 204 A 1 
HETATM 4 C C17 OLC . . . L 3 -36.005 -6.823 5.646 1 84.17 ? C17 OLC 204 A 1 
HETATM 5 C C11 OLC . . . L 3 -36.078 -13.694 6.204 1 79.64 ? C11 OLC 204 A 1 
HETATM 6 C C8 OLC . . . L 3 -35.029 -16.173 6.27 1 89.3 ? C8 OLC 204 A 1 
HETATM 7 C C24 OLC . . . L 3 -38.321 -24.274 12.473 1 84.23 ? C24 OLC 204 A 1 
HETATM 8 C C16 OLC . . . L 3 -35.853 -8.198 6.296 1 73.16 ? C16 OLC 204 A 1 
HETATM 9 C C12 OLC . . . L 3 -36.333 -12.192 6.064 1 78.05 ? C12 OLC 204 A 1 
HETATM 10 C C7 OLC . . . L 3 -33.542 -16.466 6.465 1 73.62 ? C7 OLC 204 A 1 
HETATM 11 C C15 OLC . . . L 3 -36.277 -9.288 5.314 1 69.13 ? C15 OLC 204 A 1 
HETATM 12 C C13 OLC . . . L 3 -35.646 -11.643 4.813 1 82.8 ? C13 OLC 204 A 1 
HETATM 13 C C6 OLC . . . L 3 -33.372 -17.76 7.262 1 76.97 ? C6 OLC 204 A 1 
HETATM 14 C C14 OLC . . . L 3 -35.108 -10.241 5.088 1 65.14 ? C14 OLC 204 A 1 
HETATM 15 C C5 OLC . . . L 3 -33.468 -17.488 8.766 1 78.61 ? C5 OLC 204 A 1 
HETATM 16 C C4 OLC . . . L 3 -33.62 -18.813 9.514 1 68.57 ? C4 OLC 204 A 1 
HETATM 17 C C3 OLC . . . L 3 -35.079 -19.257 9.439 1 71.31 ? C3 OLC 204 A 1 
HETATM 18 C C2 OLC . . . L 3 -35.169 -20.778 9.361 1 73.91 ? C2 OLC 204 A 1 
HETATM 19 C C21 OLC . . . L 3 -36.201 -23.405 11.428 1 65.8 ? C21 OLC 204 A 1 
HETATM 20 C C1 OLC . . . L 3 -35.233 -21.372 10.766 1 72.16 ? C1 OLC 204 A 1 
HETATM 21 C C22 OLC . . . L 3 -36.936 -23.682 12.742 1 81.58 ? C22 OLC 204 A 1 
HETATM 22 O O19 OLC . . . L 3 -34.346 -21.254 11.544 1 69.55 ? O19 OLC 204 A 1 
HETATM 23 O O25 OLC . . . L 3 -38.247 -25.673 12.435 1 90.01 ? O25 OLC 204 A 1 
HETATM 24 O O23 OLC . . . L 3 -36.187 -24.579 13.516 1 85.91 ? O23 OLC 204 A 1 
HETATM 25 O O20 OLC . . . L 3 -36.371 -22.026 11.05 1 67.52 ? O20 OLC 204 A 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           320 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           25 
#