data_5DIR # _model_server_result.job_id G767twTO992uyhv2-_poDg _model_server_result.datetime_utc '2024-11-08 11:35:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dir # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":204}' # _entry.id 5DIR # _exptl.entry_id 5DIR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 24 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec 3.4.23.36 # _cell.angle_alpha 90 _cell.angle_beta 96.92 _cell.angle_gamma 90 _cell.entry_id 5DIR _cell.length_a 112.48 _cell.length_b 105.88 _cell.length_c 85.39 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DIR _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I,J,K,L,M,N,GA 1 1 B,H,O,P,Q,R,S,T,U,HA 2 1 C,F,V,W,X,Y,EA,FA,IA 3 1 D,G,Z,AA,BA,CA,DA,JA 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 S N N ? 3 T N N ? 3 U N N ? 3 V N N ? 3 W N N ? 3 X N N ? 3 Y N N ? 3 Z N N ? 3 AA N N ? 3 BA N N ? 3 CA N N ? 3 DA N N ? 3 EA N N ? 3 FA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 E C MLE 1 E MLE 201 1_555 E N IIL 2 E IIL 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale2 E N MLE 1 E MLE 201 1_555 E C 5BV 5 E 5BV 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale3 E C IIL 2 E IIL 202 1_555 E N SER 3 E SER 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 E C SER 3 E SER 203 1_555 E N ALO 4 E ALO 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale5 E C ALO 4 E ALO 204 1_555 E N 5BV 5 E 5BV 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.31 ? covale ? covale6 F C MLE 1 F MLE 201 1_555 F N IIL 2 F IIL 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale7 F N MLE 1 F MLE 201 1_555 F C 5BV 5 F 5BV 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? covale ? covale8 F C IIL 2 F IIL 202 1_555 F N SER 3 F SER 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale9 F C SER 3 F SER 203 1_555 F N ALO 4 F ALO 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale10 F C ALO 4 F ALO 204 1_555 F N 5BV 5 F 5BV 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale11 G C MLE 1 G MLE 201 1_555 G N IIL 2 G IIL 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale12 G N MLE 1 G MLE 201 1_555 G C 5BV 5 G 5BV 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? covale ? covale13 G C IIL 2 G IIL 202 1_555 G N SER 3 G SER 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale14 G C SER 3 G SER 203 1_555 G N ALO 4 G ALO 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale15 G C ALO 4 G ALO 204 1_555 G N 5BV 5 G 5BV 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale16 H C MLE 1 H MLE 201 1_555 H N IIL 2 H IIL 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale17 H N MLE 1 H MLE 201 1_555 H C 5BV 5 H 5BV 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? covale ? covale18 H C IIL 2 H IIL 202 1_555 H N SER 3 H SER 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale19 H C SER 3 H SER 203 1_555 H N ALO 4 H ALO 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale20 H C ALO 4 H ALO 204 1_555 H N 5BV 5 H 5BV 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 324 n n C10 C9 OLC doub 325 n n C10 C11 OLC sing 326 n n C9 C8 OLC sing 327 n n C17 C16 OLC sing 328 z n C11 C12 OLC sing 329 n n C8 C7 OLC sing 330 n n C24 C22 OLC sing 331 n n C24 O25 OLC sing 332 n n C16 C15 OLC sing 333 n n C12 C13 OLC sing 334 n n C7 C6 OLC sing 335 n n C15 C14 OLC sing 336 n n C13 C14 OLC sing 337 n n C6 C5 OLC sing 338 n n C5 C4 OLC sing 339 n n C4 C3 OLC sing 340 n n C3 C2 OLC sing 341 n n C2 C1 OLC sing 342 n n C21 C22 OLC sing 343 n n C21 O20 OLC sing 344 n n C1 O19 OLC doub 345 n n C1 O20 OLC sing 346 n n C22 O23 OLC sing 347 n n C18 H18 OLC sing 348 n n C18 H18A OLC sing 349 n n C18 H18B OLC sing 350 n n C10 H10 OLC sing 351 n n C9 H9 OLC sing 352 n n C17 H17 OLC sing 353 n n C17 H17A OLC sing 354 n n C11 H11 OLC sing 355 n n C11 H11A OLC sing 356 n n C8 H8 OLC sing 357 n n C8 H8A OLC sing 358 n n C24 H24 OLC sing 359 n n C24 H24A OLC sing 360 n n C16 H16 OLC sing 361 n n C16 H16A OLC sing 362 n n C12 H12 OLC sing 363 n n C12 H12A OLC sing 364 n n C7 H7 OLC sing 365 n n C7 H7A OLC sing 366 n n C15 H15 OLC sing 367 n n C15 H15A OLC sing 368 n n C13 H13 OLC sing 369 n n C13 H13A OLC sing 370 n n C6 H6 OLC sing 371 n n C6 H6A OLC sing 372 n n C14 H14 OLC sing 373 n n C14 H14A OLC sing 374 n n C5 H5 OLC sing 375 n n C5 H5A OLC sing 376 n n C4 H4 OLC sing 377 n n C4 H4A OLC sing 378 n n C3 H3 OLC sing 379 n n C3 H3A OLC sing 380 n n C2 H2 OLC sing 381 n n C2 H2A OLC sing 382 n n C21 H21 OLC sing 383 n n C21 H21A OLC sing 384 n n C22 H22 OLC sing 385 n n O25 HO25 OLC sing 386 n n O23 HO23 OLC sing 387 n n # _atom_sites.entry_id 5DIR _atom_sites.fract_transf_matrix[1][1] 0.00889 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001079 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009445 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011797 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 OLC A 1 201 301 OLC OLC . J 3 OLC A 1 202 302 OLC OLC . K 3 OLC A 1 203 303 OLC OLC . L 3 OLC A 1 204 304 OLC OLC . M 3 OLC A 1 205 305 OLC OLC . N 3 OLC A 1 206 306 OLC OLC . O 3 OLC B 1 201 301 OLC OLC . P 3 OLC B 1 202 302 OLC OLC . Q 3 OLC B 1 203 303 OLC OLC . R 3 OLC B 1 204 304 OLC OLC . S 3 OLC B 1 205 305 OLC OLC . T 3 OLC B 1 206 306 OLC OLC . U 3 OLC B 1 207 307 OLC OLC . V 3 OLC C 1 201 303 OLC OLC . W 3 OLC C 1 202 304 OLC OLC . X 3 OLC C 1 203 305 OLC OLC . Y 3 OLC C 1 204 306 OLC OLC . Z 3 OLC D 1 201 301 OLC OLC . AA 3 OLC D 1 202 302 OLC OLC . BA 3 OLC D 1 203 303 OLC OLC . CA 3 OLC D 1 204 304 OLC OLC . DA 3 OLC D 1 205 305 OLC OLC . EA 3 OLC F 1 301 301 OLC OLC . FA 3 OLC F 1 302 302 OLC OLC . GA 4 HOH A 1 301 14 HOH HOH . GA 4 HOH A 2 302 9 HOH HOH . GA 4 HOH A 3 303 3 HOH HOH . GA 4 HOH A 4 304 4 HOH HOH . HA 4 HOH B 1 301 12 HOH HOH . HA 4 HOH B 2 302 16 HOH HOH . IA 4 HOH C 1 301 7 HOH HOH . IA 4 HOH C 2 302 5 HOH HOH . IA 4 HOH C 3 303 15 HOH HOH . IA 4 HOH C 4 304 2 HOH HOH . IA 4 HOH C 5 305 10 HOH HOH . IA 4 HOH C 6 306 6 HOH HOH . JA 4 HOH D 1 301 11 HOH HOH . JA 4 HOH D 2 302 1 HOH HOH . JA 4 HOH D 3 303 13 HOH HOH . JA 4 HOH D 4 304 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . L 3 -36.217 -5.765 6.729 1 79.39 ? C18 OLC 204 A 1 HETATM 2 C C10 OLC . . . L 3 -35.79 -14.34 4.847 1 87.98 ? C10 OLC 204 A 1 HETATM 3 C C9 OLC . . . L 3 -35.266 -15.58 4.881 1 93.75 ? C9 OLC 204 A 1 HETATM 4 C C17 OLC . . . L 3 -36.005 -6.823 5.646 1 84.17 ? C17 OLC 204 A 1 HETATM 5 C C11 OLC . . . L 3 -36.078 -13.694 6.204 1 79.64 ? C11 OLC 204 A 1 HETATM 6 C C8 OLC . . . L 3 -35.029 -16.173 6.27 1 89.3 ? C8 OLC 204 A 1 HETATM 7 C C24 OLC . . . L 3 -38.321 -24.274 12.473 1 84.23 ? C24 OLC 204 A 1 HETATM 8 C C16 OLC . . . L 3 -35.853 -8.198 6.296 1 73.16 ? C16 OLC 204 A 1 HETATM 9 C C12 OLC . . . L 3 -36.333 -12.192 6.064 1 78.05 ? C12 OLC 204 A 1 HETATM 10 C C7 OLC . . . L 3 -33.542 -16.466 6.465 1 73.62 ? C7 OLC 204 A 1 HETATM 11 C C15 OLC . . . L 3 -36.277 -9.288 5.314 1 69.13 ? C15 OLC 204 A 1 HETATM 12 C C13 OLC . . . L 3 -35.646 -11.643 4.813 1 82.8 ? C13 OLC 204 A 1 HETATM 13 C C6 OLC . . . L 3 -33.372 -17.76 7.262 1 76.97 ? C6 OLC 204 A 1 HETATM 14 C C14 OLC . . . L 3 -35.108 -10.241 5.088 1 65.14 ? C14 OLC 204 A 1 HETATM 15 C C5 OLC . . . L 3 -33.468 -17.488 8.766 1 78.61 ? C5 OLC 204 A 1 HETATM 16 C C4 OLC . . . L 3 -33.62 -18.813 9.514 1 68.57 ? C4 OLC 204 A 1 HETATM 17 C C3 OLC . . . L 3 -35.079 -19.257 9.439 1 71.31 ? C3 OLC 204 A 1 HETATM 18 C C2 OLC . . . L 3 -35.169 -20.778 9.361 1 73.91 ? C2 OLC 204 A 1 HETATM 19 C C21 OLC . . . L 3 -36.201 -23.405 11.428 1 65.8 ? C21 OLC 204 A 1 HETATM 20 C C1 OLC . . . L 3 -35.233 -21.372 10.766 1 72.16 ? C1 OLC 204 A 1 HETATM 21 C C22 OLC . . . L 3 -36.936 -23.682 12.742 1 81.58 ? C22 OLC 204 A 1 HETATM 22 O O19 OLC . . . L 3 -34.346 -21.254 11.544 1 69.55 ? O19 OLC 204 A 1 HETATM 23 O O25 OLC . . . L 3 -38.247 -25.673 12.435 1 90.01 ? O25 OLC 204 A 1 HETATM 24 O O23 OLC . . . L 3 -36.187 -24.579 13.516 1 85.91 ? O23 OLC 204 A 1 HETATM 25 O O20 OLC . . . L 3 -36.371 -22.026 11.05 1 67.52 ? O20 OLC 204 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 25 #