data_5DIS # _model_server_result.job_id Abf7HoZ5liUKsrdJPedBsg _model_server_result.datetime_utc '2025-02-05 18:02:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dis # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":201}' # _entry.id 5DIS # _exptl.entry_id 5DIS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5DIS _cell.length_a 112.33 _cell.length_b 248.97 _cell.length_c 210.57 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DIS _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 5 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 5 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n E GLC 1 E 1 GLC E 2 MAL 5 n E GLC 2 E 2 GLC E 2 MAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 E O4 GLC . E GLC 1 1_555 E C1 GLC . E GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 sing metalc ? metalc1 B OG1 THR 17 B THR 24 1_555 H MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc2 B OG1 THR 35 B THR 42 1_555 H MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc3 G O1G GTP . B GTP 201 1_555 H MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc4 G O1B GTP . B GTP 201 1_555 H MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? metalc ? metalc5 H MG MG . B MG 202 1_555 K O HOH . B HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc6 H MG MG . B MG 202 1_555 K O HOH . B HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 153 n n PG O2G GTP sing 154 n n PG O3G GTP sing 155 n n PG O3B GTP sing 156 n n O2G HOG2 GTP sing 157 n n O3G HOG3 GTP sing 158 n n O3B PB GTP sing 159 n n PB O1B GTP doub 160 n n PB O2B GTP sing 161 n n PB O3A GTP sing 162 n n O2B HOB2 GTP sing 163 n n O3A PA GTP sing 164 n n PA O1A GTP doub 165 n n PA O2A GTP sing 166 n n PA O5' GTP sing 167 n n O2A HOA2 GTP sing 168 n n O5' C5' GTP sing 169 n n C5' C4' GTP sing 170 n n C5' H5' GTP sing 171 n n C5' "H5''" GTP sing 172 n n C4' O4' GTP sing 173 n n C4' C3' GTP sing 174 n n C4' H4' GTP sing 175 n n O4' C1' GTP sing 176 n n C3' O3' GTP sing 177 n n C3' C2' GTP sing 178 n n C3' H3' GTP sing 179 n n O3' HO3' GTP sing 180 n n C2' O2' GTP sing 181 n n C2' C1' GTP sing 182 n n C2' H2' GTP sing 183 n n O2' HO2' GTP sing 184 n n C1' N9 GTP sing 185 n n C1' H1' GTP sing 186 n n N9 C8 GTP sing 187 n y N9 C4 GTP sing 188 n y C8 N7 GTP doub 189 n y C8 H8 GTP sing 190 n n N7 C5 GTP sing 191 n y C5 C6 GTP sing 192 n n C5 C4 GTP doub 193 n y C6 O6 GTP doub 194 n n C6 N1 GTP sing 195 n n N1 C2 GTP sing 196 n n N1 HN1 GTP sing 197 n n C2 N2 GTP sing 198 n n C2 N3 GTP doub 199 n n N2 HN21 GTP sing 200 n n N2 HN22 GTP sing 201 n n N3 C4 GTP sing 202 n n # _atom_sites.entry_id 5DIS _atom_sites.fract_transf_matrix[1][1] 0.008902 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004017 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004749 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 PRO A 1 1101 1 PRO PRO . G 7 GTP B 1 201 217 GTP GTP . H 8 MG B 1 202 218 MG MG . I 6 PRO C 1 301 3 PRO PRO . J 9 HOH A 1 1201 8 HOH HOH . J 9 HOH A 2 1202 4 HOH HOH . J 9 HOH A 3 1203 13 HOH HOH . K 9 HOH B 1 301 1 HOH HOH . K 9 HOH B 2 302 11 HOH HOH . K 9 HOH B 3 303 12 HOH HOH . K 9 HOH B 4 304 5 HOH HOH . K 9 HOH B 5 305 3 HOH HOH . K 9 HOH B 6 306 2 HOH HOH . K 9 HOH B 7 307 6 HOH HOH . K 9 HOH B 8 308 7 HOH HOH . K 9 HOH B 9 309 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . G 7 3.106 -46.469 13.326 1 135.47 ? PG GTP 201 B 1 HETATM 2 O O1G GTP . . . G 7 4.025 -47.139 12.369 1 105.53 ? O1G GTP 201 B 1 HETATM 3 O O2G GTP . . . G 7 3.658 -45.208 13.885 1 106.58 ? O2G GTP 201 B 1 HETATM 4 O O3G GTP . . . G 7 2.531 -47.395 14.338 1 122.06 ? O3G GTP 201 B 1 HETATM 5 O O3B GTP . . . G 7 1.812 -46.026 12.486 1 65.97 ? O3B GTP 201 B 1 HETATM 6 P PB GTP . . . G 7 1.866 -45.162 11.098 1 69.86 ? PB GTP 201 B 1 HETATM 7 O O1B GTP . . . G 7 3.261 -45.202 10.519 1 78.9 ? O1B GTP 201 B 1 HETATM 8 O O2B GTP . . . G 7 1.205 -43.837 11.282 1 70.89 ? O2B GTP 201 B 1 HETATM 9 O O3A GTP . . . G 7 0.862 -46.019 10.157 1 103.9 ? O3A GTP 201 B 1 HETATM 10 P PA GTP . . . G 7 1.185 -46.446 8.633 1 84.74 ? PA GTP 201 B 1 HETATM 11 O O1A GTP . . . G 7 1.299 -45.217 7.788 1 77.93 ? O1A GTP 201 B 1 HETATM 12 O O2A GTP . . . G 7 2.292 -47.452 8.654 1 99.9 ? O2A GTP 201 B 1 HETATM 13 O O5' GTP . . . G 7 -0.184 -47.192 8.298 1 56.12 ? O5' GTP 201 B 1 HETATM 14 C C5' GTP . . . G 7 -1.359 -46.441 8.019 1 63.79 ? C5' GTP 201 B 1 HETATM 15 C C4' GTP . . . G 7 -2.498 -47.356 7.577 1 72.63 ? C4' GTP 201 B 1 HETATM 16 O O4' GTP . . . G 7 -3.625 -46.556 7.239 1 70.42 ? O4' GTP 201 B 1 HETATM 17 C C3' GTP . . . G 7 -2.104 -48.103 6.323 1 76.34 ? C3' GTP 201 B 1 HETATM 18 O O3' GTP . . . G 7 -2.685 -49.403 6.383 1 73.41 ? O3' GTP 201 B 1 HETATM 19 C C2' GTP . . . G 7 -2.716 -47.331 5.187 1 76.07 ? C2' GTP 201 B 1 HETATM 20 O O2' GTP . . . G 7 -3.247 -48.215 4.196 1 87.82 ? O2' GTP 201 B 1 HETATM 21 C C1' GTP . . . G 7 -3.833 -46.541 5.836 1 75.01 ? C1' GTP 201 B 1 HETATM 22 N N9 GTP . . . G 7 -3.827 -45.135 5.345 1 71.69 ? N9 GTP 201 B 1 HETATM 23 C C8 GTP . . . G 7 -2.779 -44.29 5.398 1 79.87 ? C8 GTP 201 B 1 HETATM 24 N N7 GTP . . . G 7 -3.114 -43.092 4.857 1 83.29 ? N7 GTP 201 B 1 HETATM 25 C C5 GTP . . . G 7 -4.391 -43.167 4.442 1 62.13 ? C5 GTP 201 B 1 HETATM 26 C C6 GTP . . . G 7 -5.358 -42.255 3.801 1 69.88 ? C6 GTP 201 B 1 HETATM 27 O O6 GTP . . . G 7 -5.033 -41.083 3.499 1 75.71 ? O6 GTP 201 B 1 HETATM 28 N N1 GTP . . . G 7 -6.584 -42.726 3.553 1 72.28 ? N1 GTP 201 B 1 HETATM 29 C C2 GTP . . . G 7 -6.95 -43.975 3.862 1 66.29 ? C2 GTP 201 B 1 HETATM 30 N N2 GTP . . . G 7 -8.204 -44.384 3.573 1 77.23 ? N2 GTP 201 B 1 HETATM 31 N N3 GTP . . . G 7 -6.117 -44.844 4.455 1 65.4 ? N3 GTP 201 B 1 HETATM 32 C C4 GTP . . . G 7 -4.854 -44.51 4.763 1 60.64 ? C4 GTP 201 B 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 63 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 32 #