data_5DIT # _model_server_result.job_id Y46VPHAhBz3l8-3EA-NX3A _model_server_result.datetime_utc '2024-11-23 11:01:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dit # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5DIT # _exptl.entry_id 5DIT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 680.871 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1R)-3-(3,4-dimethoxyphenyl)-1-{3-[2-(morpholin-4-yl)ethoxy]phenyl}propyl (2S)-1-[(2S,3R)-2-cyclohexyl-3-hydroxybutanoyl]piperidine-2-carboxylate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5DIT _cell.length_a 43.371 _cell.length_b 50.22 _cell.length_c 61.811 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DIT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C39 H56 N2 O8' _chem_comp.formula_weight 680.871 _chem_comp.id 5B8 _chem_comp.mon_nstd_flag . _chem_comp.name '(1R)-3-(3,4-dimethoxyphenyl)-1-{3-[2-(morpholin-4-yl)ethoxy]phenyl}propyl (2S)-1-[(2S,3R)-2-cyclohexyl-3-hydroxybutanoyl]piperidine-2-carboxylate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OBG CAS 5B8 sing 1 n n OBG CAT 5B8 sing 2 n n CAS CBB 5B8 sing 3 n n CAT CBC 5B8 sing 4 n n CBB NBV 5B8 sing 5 n n CBC NBV 5B8 sing 6 n n NBV CBD 5B8 sing 7 n n CAH CAG 5B8 doub 8 n y CAH CBM 5B8 sing 9 n y CAG CAI 5B8 sing 10 n y CAU OBH 5B8 sing 11 n n CAU CBD 5B8 sing 12 n n OBH CBM 5B8 sing 13 n n CBM CAL 5B8 doub 14 n y CAI CBN 5B8 doub 15 n y CAV CBL 5B8 sing 16 n n CAV CAZ 5B8 sing 17 n n CAL CBN 5B8 sing 18 n y CBN CBR 5B8 sing 19 n n CAJ CBL 5B8 doub 20 n y CAJ CAK 5B8 sing 21 n y CBL CAM 5B8 sing 22 n y CAZ CBR 5B8 sing 23 n n CAC CBQ 5B8 sing 24 n n CAK CBO 5B8 doub 25 n y OAF CBQ 5B8 sing 26 n n CAM CBP 5B8 doub 27 n y CBR OBI 5B8 sing 28 n n CBQ CBU 5B8 sing 29 n n CBO CBP 5B8 sing 30 n y CBO OBE 5B8 sing 31 n n CBP OBF 5B8 sing 32 n n CAB OBF 5B8 sing 33 n n OBE CAA 5B8 sing 34 n n OBI C 5B8 sing 35 n n CBU CBK 5B8 sing 36 n n CBU CBS 5B8 sing 37 n n CBA N 5B8 sing 38 n n CBA CAR 5B8 sing 39 n n C O 5B8 doub 40 n n C CA 5B8 sing 41 n n CBK N 5B8 sing 42 n n CBK OAE 5B8 doub 43 n n CBS CAW 5B8 sing 44 n n CBS CAX 5B8 sing 45 n n N CA 5B8 sing 46 n n CAW CAO 5B8 sing 47 n n CAR CAQ 5B8 sing 48 n n CA CB 5B8 sing 49 n n CAO CAN 5B8 sing 50 n n CAQ CB 5B8 sing 51 n n CAX CAP 5B8 sing 52 n n CAN CAP 5B8 sing 53 n n CAW H1 5B8 sing 54 n n CAW H2 5B8 sing 55 n n CAO H3 5B8 sing 56 n n CAO H4 5B8 sing 57 n n CAN H5 5B8 sing 58 n n CAN H6 5B8 sing 59 n n CAP H7 5B8 sing 60 n n CAP H8 5B8 sing 61 n n CAX H9 5B8 sing 62 n n CAX H10 5B8 sing 63 n n CBS H11 5B8 sing 64 n n CBU H12 5B8 sing 65 n n CBQ H13 5B8 sing 66 n n CAC H14 5B8 sing 67 n n CAC H15 5B8 sing 68 n n CAC H16 5B8 sing 69 n n OAF H17 5B8 sing 70 n n CBA H18 5B8 sing 71 n n CBA H19 5B8 sing 72 n n CAR H20 5B8 sing 73 n n CAR H21 5B8 sing 74 n n CAQ H22 5B8 sing 75 n n CAQ H23 5B8 sing 76 n n CB H24 5B8 sing 77 n n CB H25 5B8 sing 78 n n CA H26 5B8 sing 79 n n CBR H27 5B8 sing 80 n n CAZ H28 5B8 sing 81 n n CAZ H29 5B8 sing 82 n n CAV H30 5B8 sing 83 n n CAV H31 5B8 sing 84 n n CAM H32 5B8 sing 85 n n CAJ H33 5B8 sing 86 n n CAK H34 5B8 sing 87 n n CAA H35 5B8 sing 88 n n CAA H36 5B8 sing 89 n n CAA H37 5B8 sing 90 n n CAB H38 5B8 sing 91 n n CAB H39 5B8 sing 92 n n CAB H40 5B8 sing 93 n n CAL H41 5B8 sing 94 n n CAI H42 5B8 sing 95 n n CAG H43 5B8 sing 96 n n CAH H44 5B8 sing 97 n n CAU H45 5B8 sing 98 n n CAU H46 5B8 sing 99 n n CBD H47 5B8 sing 100 n n CBD H48 5B8 sing 101 n n CBB H50 5B8 sing 102 n n CBB H51 5B8 sing 103 n n CAS H52 5B8 sing 104 n n CAS H53 5B8 sing 105 n n CAT H54 5B8 sing 106 n n CAT H55 5B8 sing 107 n n CBC H56 5B8 sing 108 n n CBC H57 5B8 sing 109 n n # _atom_sites.entry_id 5DIT _atom_sites.fract_transf_matrix[1][1] 0.023057 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019912 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016178 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5B8 A 1 201 1 5B8 DRG . C 3 HOH A 1 301 14 HOH HOH . C 3 HOH A 2 302 9 HOH HOH . C 3 HOH A 3 303 1 HOH HOH . C 3 HOH A 4 304 29 HOH HOH . C 3 HOH A 5 305 20 HOH HOH . C 3 HOH A 6 306 33 HOH HOH . C 3 HOH A 7 307 5 HOH HOH . C 3 HOH A 8 308 23 HOH HOH . C 3 HOH A 9 309 35 HOH HOH . C 3 HOH A 10 310 52 HOH HOH . C 3 HOH A 11 311 7 HOH HOH . C 3 HOH A 12 312 17 HOH HOH . C 3 HOH A 13 313 4 HOH HOH . C 3 HOH A 14 314 2 HOH HOH . C 3 HOH A 15 315 55 HOH HOH . C 3 HOH A 16 316 39 HOH HOH . C 3 HOH A 17 317 37 HOH HOH . C 3 HOH A 18 318 15 HOH HOH . C 3 HOH A 19 319 21 HOH HOH . C 3 HOH A 20 320 11 HOH HOH . C 3 HOH A 21 321 24 HOH HOH . C 3 HOH A 22 322 50 HOH HOH . C 3 HOH A 23 323 6 HOH HOH . C 3 HOH A 24 324 31 HOH HOH . C 3 HOH A 25 325 44 HOH HOH . C 3 HOH A 26 326 54 HOH HOH . C 3 HOH A 27 327 25 HOH HOH . C 3 HOH A 28 328 16 HOH HOH . C 3 HOH A 29 329 19 HOH HOH . C 3 HOH A 30 330 46 HOH HOH . C 3 HOH A 31 331 13 HOH HOH . C 3 HOH A 32 332 30 HOH HOH . C 3 HOH A 33 333 48 HOH HOH . C 3 HOH A 34 334 38 HOH HOH . C 3 HOH A 35 335 49 HOH HOH . C 3 HOH A 36 336 28 HOH HOH . C 3 HOH A 37 337 3 HOH HOH . C 3 HOH A 38 338 27 HOH HOH . C 3 HOH A 39 339 36 HOH HOH . C 3 HOH A 40 340 18 HOH HOH . C 3 HOH A 41 341 8 HOH HOH . C 3 HOH A 42 342 45 HOH HOH . C 3 HOH A 43 343 40 HOH HOH . C 3 HOH A 44 344 34 HOH HOH . C 3 HOH A 45 345 42 HOH HOH . C 3 HOH A 46 346 51 HOH HOH . C 3 HOH A 47 347 47 HOH HOH . C 3 HOH A 48 348 26 HOH HOH . C 3 HOH A 49 349 32 HOH HOH . C 3 HOH A 50 350 41 HOH HOH . C 3 HOH A 51 351 53 HOH HOH . C 3 HOH A 52 352 22 HOH HOH . C 3 HOH A 53 353 10 HOH HOH . C 3 HOH A 54 354 12 HOH HOH . C 3 HOH A 55 355 43 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAW 5B8 . . . B 2 -11.274 -2.678 -25.488 1 40.38 ? CAW 5B8 201 A 1 HETATM 2 C CAO 5B8 . . . B 2 -11.784 -3.97 -24.844 1 40 ? CAO 5B8 201 A 1 HETATM 3 C CAN 5B8 . . . B 2 -11.323 -3.956 -23.4 1 40.34 ? CAN 5B8 201 A 1 HETATM 4 C CAP 5B8 . . . B 2 -9.809 -4.086 -23.348 1 39.44 ? CAP 5B8 201 A 1 HETATM 5 C CAX 5B8 . . . B 2 -9.126 -3.009 -24.198 1 39.24 ? CAX 5B8 201 A 1 HETATM 6 C CBS 5B8 . . . B 2 -9.729 -2.929 -25.608 1 39.66 ? CBS 5B8 201 A 1 HETATM 7 C CBU 5B8 . . . B 2 -8.966 -1.867 -26.467 1 38.58 ? CBU 5B8 201 A 1 HETATM 8 C CBQ 5B8 . . . B 2 -9.577 -1.768 -27.887 1 41.06 ? CBQ 5B8 201 A 1 HETATM 9 C CAC 5B8 . . . B 2 -8.654 -0.996 -28.825 1 41.38 ? CAC 5B8 201 A 1 HETATM 10 O OAF 5B8 . . . B 2 -9.755 -3.076 -28.441 1 44.6 ? OAF 5B8 201 A 1 HETATM 11 C CBK 5B8 . . . B 2 -8.938 -0.456 -25.8 1 36.47 ? CBK 5B8 201 A 1 HETATM 12 O OAE 5B8 . . . B 2 -10.011 0.081 -25.492 1 33.95 ? OAE 5B8 201 A 1 HETATM 13 N N 5B8 . . . B 2 -7.728 0.151 -25.569 1 34.72 ? N 5B8 201 A 1 HETATM 14 C CBA 5B8 . . . B 2 -6.378 -0.414 -25.962 1 33.04 ? CBA 5B8 201 A 1 HETATM 15 C CAR 5B8 . . . B 2 -5.28 -0.156 -24.999 1 32.59 ? CAR 5B8 201 A 1 HETATM 16 C CAQ 5B8 . . . B 2 -5.299 1.33 -24.71 1 33.22 ? CAQ 5B8 201 A 1 HETATM 17 C CB 5B8 . . . B 2 -6.587 1.733 -24.018 1 33.42 ? CB 5B8 201 A 1 HETATM 18 C CA 5B8 . . . B 2 -7.773 1.519 -24.953 1 35.31 ? CA 5B8 201 A 1 HETATM 19 C C 5B8 . . . B 2 -7.825 2.522 -25.962 1 37.97 ? C 5B8 201 A 1 HETATM 20 O O 5B8 . . . B 2 -8.245 3.658 -25.716 1 38.72 ? O 5B8 201 A 1 HETATM 21 O OBI 5B8 . . . B 2 -7.381 2.128 -27.198 1 37.88 ? OBI 5B8 201 A 1 HETATM 22 C CBR 5B8 . . . B 2 -7.449 3.097 -28.268 1 38.94 ? CBR 5B8 201 A 1 HETATM 23 C CAZ 5B8 . . . B 2 -8.852 3.026 -28.855 1 37.63 ? CAZ 5B8 201 A 1 HETATM 24 C CAV 5B8 . . . B 2 -9.155 4.201 -29.749 1 37.18 ? CAV 5B8 201 A 1 HETATM 25 C CBL 5B8 . . . B 2 -9.486 5.407 -29.065 1 36.42 ? CBL 5B8 201 A 1 HETATM 26 C CAM 5B8 . . . B 2 -10.718 5.633 -28.418 1 35.44 ? CAM 5B8 201 A 1 HETATM 27 C CAJ 5B8 . . . B 2 -8.55 6.436 -29.106 1 35.49 ? CAJ 5B8 201 A 1 HETATM 28 C CAK 5B8 . . . B 2 -8.801 7.648 -28.491 1 36.77 ? CAK 5B8 201 A 1 HETATM 29 C CBO 5B8 . . . B 2 -10.004 7.873 -27.831 1 37.93 ? CBO 5B8 201 A 1 HETATM 30 O OBE 5B8 . . . B 2 -10.209 9.105 -27.255 1 41.27 ? OBE 5B8 201 A 1 HETATM 31 C CAA 5B8 . . . B 2 -11.054 9.326 -26.113 1 42.79 ? CAA 5B8 201 A 1 HETATM 32 C CBP 5B8 . . . B 2 -10.981 6.868 -27.801 1 36.17 ? CBP 5B8 201 A 1 HETATM 33 O OBF 5B8 . . . B 2 -12.131 7.169 -27.13 1 36.99 ? OBF 5B8 201 A 1 HETATM 34 C CAB 5B8 . . . B 2 -13.358 6.598 -27.615 1 36.87 ? CAB 5B8 201 A 1 HETATM 35 C CBN 5B8 . . . B 2 -6.39 2.731 -29.12 1 39.14 ? CBN 5B8 201 A 1 HETATM 36 C CAL 5B8 . . . B 2 -5.334 3.612 -29.269 1 40.86 ? CAL 5B8 201 A 1 HETATM 37 C CAI 5B8 . . . B 2 -6.305 1.491 -29.749 1 39.19 ? CAI 5B8 201 A 1 HETATM 38 C CAG 5B8 . . . B 2 -5.209 1.169 -30.553 1 40.66 ? CAG 5B8 201 A 1 HETATM 39 C CAH 5B8 . . . B 2 -4.165 2.082 -30.714 1 42.07 ? CAH 5B8 201 A 1 HETATM 40 C CBM 5B8 . . . B 2 -4.238 3.307 -30.054 1 42.38 ? CBM 5B8 201 A 1 HETATM 41 O OBH 5B8 . . . B 2 -3.299 4.283 -30.152 1 52.25 ? OBH 5B8 201 A 1 HETATM 42 C CAU 5B8 . . . B 2 -1.957 3.906 -30.312 1 56.07 ? CAU 5B8 201 A 1 HETATM 43 C CBD 5B8 . . . B 2 -1.162 5.118 -29.845 1 58.4 ? CBD 5B8 201 A 1 HETATM 44 N NBV 5B8 . . . B 2 -0.76 6.025 -30.959 1 60.28 ? NBV 5B8 201 A 1 HETATM 45 C CBB 5B8 . . . B 2 -1.878 6.479 -31.81 1 60.76 ? CBB 5B8 201 A 1 HETATM 46 C CAS 5B8 . . . B 2 -1.376 7.318 -32.985 1 62.68 ? CAS 5B8 201 A 1 HETATM 47 O OBG 5B8 . . . B 2 -0.324 6.593 -33.681 1 63.24 ? OBG 5B8 201 A 1 HETATM 48 C CAT 5B8 . . . B 2 0.808 6.466 -32.853 1 63.12 ? CAT 5B8 201 A 1 HETATM 49 C CBC 5B8 . . . B 2 0.356 5.484 -31.763 1 61.93 ? CBC 5B8 201 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 49 #