data_5DIV # _model_server_result.job_id iWPeJD8CQxek1St4f57TYA _model_server_result.datetime_utc '2024-12-14 22:57:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5div # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5DIV # _exptl.entry_id 5DIV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 529.668 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S)-N-(1-carbamoylcyclopentyl)-1-[(2S)-2-cyclohexyl-2-(3,4,5-trimethoxyphenyl)acetyl]piperidine-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5DIV _cell.length_a 82.16 _cell.length_b 82.16 _cell.length_c 50.194 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DIV _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C29 H43 N3 O6' _chem_comp.formula_weight 529.668 _chem_comp.id 5BH _chem_comp.mon_nstd_flag . _chem_comp.name (2S)-N-(1-carbamoylcyclopentyl)-1-[(2S)-2-cyclohexyl-2-(3,4,5-trimethoxyphenyl)acetyl]piperidine-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAJ CAK 5BH sing 1 n n CAJ CAL 5BH sing 2 n n CAK CAQ 5BH sing 3 n n CAA OAX 5BH sing 4 n n CAQ CBH 5BH sing 5 n n CAL CAR 5BH sing 6 n n OAX CBE 5BH sing 7 n n CAR CBH 5BH sing 8 n n CBE CAH 5BH doub 9 n y CBE CBG 5BH sing 10 n y CAH CBD 5BH sing 11 n y CBH CBJ 5BH sing 12 n n OAZ CBG 5BH sing 13 n n OAZ CAC 5BH sing 14 n n CBG CBF 5BH doub 15 n y CBJ CBD 5BH sing 16 n n CBJ CBC 5BH sing 17 n n CBD CAI 5BH doub 18 n y CBF CAI 5BH sing 19 n y CBF OAY 5BH sing 20 n n CBC OAG 5BH doub 21 n n CBC N 5BH sing 22 n n OAY CAB 5BH sing 23 n n CAT CAN 5BH sing 24 n n CAT N 5BH sing 25 n n CAN CAM 5BH sing 26 n n N CA 5BH sing 27 n n CAP CAV 5BH sing 28 n n CAP CAO 5BH sing 29 n n CAM CB 5BH sing 30 n n CA CB 5BH sing 31 n n CA C 5BH sing 32 n n CAV CBL 5BH sing 33 n n NAW C 5BH sing 34 n n NAW CBL 5BH sing 35 n n CAO CAU 5BH sing 36 n n C O 5BH doub 37 n n CBL CAU 5BH sing 38 n n CBL CBA 5BH sing 39 n n NAD CBA 5BH sing 40 n n CBA OAE 5BH doub 41 n n CAU H1 5BH sing 42 n n CAU H2 5BH sing 43 n n CAO H3 5BH sing 44 n n CAO H4 5BH sing 45 n n CAP H5 5BH sing 46 n n CAP H6 5BH sing 47 n n CAV H7 5BH sing 48 n n CAV H8 5BH sing 49 n n NAD H9 5BH sing 50 n n NAD H10 5BH sing 51 n n NAW H11 5BH sing 52 n n CA H12 5BH sing 53 n n CB H13 5BH sing 54 n n CB H14 5BH sing 55 n n CAM H15 5BH sing 56 n n CAM H16 5BH sing 57 n n CAN H17 5BH sing 58 n n CAN H18 5BH sing 59 n n CAT H19 5BH sing 60 n n CAT H20 5BH sing 61 n n CBJ H21 5BH sing 62 n n CBH H22 5BH sing 63 n n CAQ H23 5BH sing 64 n n CAQ H24 5BH sing 65 n n CAK H25 5BH sing 66 n n CAK H26 5BH sing 67 n n CAJ H27 5BH sing 68 n n CAJ H28 5BH sing 69 n n CAL H29 5BH sing 70 n n CAL H30 5BH sing 71 n n CAR H31 5BH sing 72 n n CAR H32 5BH sing 73 n n CAI H33 5BH sing 74 n n CAH H34 5BH sing 75 n n CAA H35 5BH sing 76 n n CAA H36 5BH sing 77 n n CAA H37 5BH sing 78 n n CAC H38 5BH sing 79 n n CAC H39 5BH sing 80 n n CAC H40 5BH sing 81 n n CAB H41 5BH sing 82 n n CAB H42 5BH sing 83 n n CAB H43 5BH sing 84 n n # _atom_sites.entry_id 5DIV _atom_sites.fract_transf_matrix[1][1] 0.012171 _atom_sites.fract_transf_matrix[1][2] 0.007027 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014054 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019923 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5BH A 1 201 1 5BH DRG . C 3 HOH A 1 301 47 HOH HOH . C 3 HOH A 2 302 34 HOH HOH . C 3 HOH A 3 303 46 HOH HOH . C 3 HOH A 4 304 22 HOH HOH . C 3 HOH A 5 305 26 HOH HOH . C 3 HOH A 6 306 20 HOH HOH . C 3 HOH A 7 307 11 HOH HOH . C 3 HOH A 8 308 2 HOH HOH . C 3 HOH A 9 309 8 HOH HOH . C 3 HOH A 10 310 37 HOH HOH . C 3 HOH A 11 311 41 HOH HOH . C 3 HOH A 12 312 30 HOH HOH . C 3 HOH A 13 313 4 HOH HOH . C 3 HOH A 14 314 40 HOH HOH . C 3 HOH A 15 315 55 HOH HOH . C 3 HOH A 16 316 14 HOH HOH . C 3 HOH A 17 317 3 HOH HOH . C 3 HOH A 18 318 6 HOH HOH . C 3 HOH A 19 319 60 HOH HOH . C 3 HOH A 20 320 1 HOH HOH . C 3 HOH A 21 321 57 HOH HOH . C 3 HOH A 22 322 51 HOH HOH . C 3 HOH A 23 323 48 HOH HOH . C 3 HOH A 24 324 15 HOH HOH . C 3 HOH A 25 325 7 HOH HOH . C 3 HOH A 26 326 5 HOH HOH . C 3 HOH A 27 327 38 HOH HOH . C 3 HOH A 28 328 12 HOH HOH . C 3 HOH A 29 329 31 HOH HOH . C 3 HOH A 30 330 21 HOH HOH . C 3 HOH A 31 331 29 HOH HOH . C 3 HOH A 32 332 23 HOH HOH . C 3 HOH A 33 333 18 HOH HOH . C 3 HOH A 34 334 33 HOH HOH . C 3 HOH A 35 335 9 HOH HOH . C 3 HOH A 36 336 19 HOH HOH . C 3 HOH A 37 337 28 HOH HOH . C 3 HOH A 38 338 42 HOH HOH . C 3 HOH A 39 339 43 HOH HOH . C 3 HOH A 40 340 52 HOH HOH . C 3 HOH A 41 341 58 HOH HOH . C 3 HOH A 42 342 39 HOH HOH . C 3 HOH A 43 343 27 HOH HOH . C 3 HOH A 44 344 56 HOH HOH . C 3 HOH A 45 345 13 HOH HOH . C 3 HOH A 46 346 10 HOH HOH . C 3 HOH A 47 347 25 HOH HOH . C 3 HOH A 48 348 50 HOH HOH . C 3 HOH A 49 349 35 HOH HOH . C 3 HOH A 50 350 53 HOH HOH . C 3 HOH A 51 351 61 HOH HOH . C 3 HOH A 52 352 32 HOH HOH . C 3 HOH A 53 353 59 HOH HOH . C 3 HOH A 54 354 16 HOH HOH . C 3 HOH A 55 355 36 HOH HOH . C 3 HOH A 56 356 49 HOH HOH . C 3 HOH A 57 357 54 HOH HOH . C 3 HOH A 58 358 17 HOH HOH . C 3 HOH A 59 359 24 HOH HOH . C 3 HOH A 60 360 44 HOH HOH . C 3 HOH A 61 361 45 HOH HOH . C 3 HOH A 62 362 63 HOH HOH . C 3 HOH A 63 363 62 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAU 5BH . . . B 2 32.937 -28.575 0.893 1 20.53 ? CAU 5BH 201 A 1 HETATM 2 C CAO 5BH . . . B 2 33.441 -29.265 -0.325 1 21.96 ? CAO 5BH 201 A 1 HETATM 3 C CAP 5BH . . . B 2 33.95 -28.156 -1.273 1 21.04 ? CAP 5BH 201 A 1 HETATM 4 C CAV 5BH . . . B 2 33.932 -26.852 -0.462 1 21.17 ? CAV 5BH 201 A 1 HETATM 5 C CBL 5BH . . . B 2 32.738 -27.08 0.443 1 20.03 ? CBL 5BH 201 A 1 HETATM 6 C CBA 5BH . . . B 2 32.793 -26.171 1.667 1 20.49 ? CBA 5BH 201 A 1 HETATM 7 O OAE 5BH . . . B 2 33.329 -26.577 2.687 1 23.92 ? OAE 5BH 201 A 1 HETATM 8 N NAD 5BH . . . B 2 32.123 -25.05 1.624 1 20.26 ? NAD 5BH 201 A 1 HETATM 9 N NAW 5BH . . . B 2 31.504 -26.926 -0.361 1 17.81 ? NAW 5BH 201 A 1 HETATM 10 C C 5BH . . . B 2 30.262 -27.233 0.115 1 17.73 ? C 5BH 201 A 1 HETATM 11 O O 5BH . . . B 2 30.101 -27.43 1.335 1 16.65 ? O 5BH 201 A 1 HETATM 12 C CA 5BH . . . B 2 29.153 -27.159 -0.827 1 17.02 ? CA 5BH 201 A 1 HETATM 13 C CB 5BH . . . B 2 28.211 -28.387 -0.651 1 16.03 ? CB 5BH 201 A 1 HETATM 14 C CAM 5BH . . . B 2 28.874 -29.611 -1.035 1 15.06 ? CAM 5BH 201 A 1 HETATM 15 C CAN 5BH . . . B 2 29.131 -29.509 -2.53 1 15.23 ? CAN 5BH 201 A 1 HETATM 16 C CAT 5BH . . . B 2 30.094 -28.372 -2.829 1 15.46 ? CAT 5BH 201 A 1 HETATM 17 N N 5BH . . . B 2 29.558 -27.121 -2.264 1 15.88 ? N 5BH 201 A 1 HETATM 18 C CBC 5BH . . . B 2 29.458 -25.975 -2.969 1 16.38 ? CBC 5BH 201 A 1 HETATM 19 O OAG 5BH . . . B 2 28.967 -24.945 -2.533 1 15.95 ? OAG 5BH 201 A 1 HETATM 20 C CBJ 5BH . . . B 2 29.982 -25.967 -4.423 1 16.89 ? CBJ 5BH 201 A 1 HETATM 21 C CBH 5BH . . . B 2 29.385 -24.757 -5.212 1 18.88 ? CBH 5BH 201 A 1 HETATM 22 C CAQ 5BH . . . B 2 30.084 -24.547 -6.561 1 18.76 ? CAQ 5BH 201 A 1 HETATM 23 C CAK 5BH . . . B 2 29.516 -23.37 -7.289 1 19.82 ? CAK 5BH 201 A 1 HETATM 24 C CAJ 5BH . . . B 2 28.054 -23.74 -7.597 1 19.33 ? CAJ 5BH 201 A 1 HETATM 25 C CAL 5BH . . . B 2 27.311 -23.879 -6.278 1 20.08 ? CAL 5BH 201 A 1 HETATM 26 C CAR 5BH . . . B 2 27.867 -25.017 -5.503 1 18.56 ? CAR 5BH 201 A 1 HETATM 27 C CBD 5BH . . . B 2 31.415 -25.852 -4.402 1 17.05 ? CBD 5BH 201 A 1 HETATM 28 C CAI 5BH . . . B 2 32.063 -24.896 -3.608 1 17.67 ? CAI 5BH 201 A 1 HETATM 29 C CAH 5BH . . . B 2 32.183 -26.662 -5.252 1 17.86 ? CAH 5BH 201 A 1 HETATM 30 C CBE 5BH . . . B 2 33.58 -26.546 -5.283 1 18.87 ? CBE 5BH 201 A 1 HETATM 31 O OAX 5BH . . . B 2 34.423 -27.275 -6.076 1 20.97 ? OAX 5BH 201 A 1 HETATM 32 C CAA 5BH . . . B 2 33.883 -28.153 -7.099 1 20.39 ? CAA 5BH 201 A 1 HETATM 33 C CBG 5BH . . . B 2 34.19 -25.596 -4.486 1 19 ? CBG 5BH 201 A 1 HETATM 34 O OAZ 5BH . . . B 2 35.573 -25.468 -4.515 1 19.2 ? OAZ 5BH 201 A 1 HETATM 35 C CAC 5BH . . . B 2 36.283 -26.388 -3.688 1 18.3 ? CAC 5BH 201 A 1 HETATM 36 C CBF 5BH . . . B 2 33.462 -24.758 -3.66 1 20.09 ? CBF 5BH 201 A 1 HETATM 37 O OAY 5BH . . . B 2 34.205 -23.875 -2.883 1 19.94 ? OAY 5BH 201 A 1 HETATM 38 C CAB 5BH . . . B 2 33.466 -22.84 -2.226 1 21.1 ? CAB 5BH 201 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 435 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 38 #