data_5DJ5 # _model_server_result.job_id S04lUQRZKMdIWGdSPAO2dA _model_server_result.datetime_utc '2024-10-14 08:27:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dj5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":800}' # _entry.id 5DJ5 # _exptl.entry_id 5DJ5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 298.29 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3E,3aR,8bS)-3-({[(2R)-4-methyl-5-oxo-2,5-dihydrofuran-2-yl]oxy}methylidene)-3,3a,4,8b-tetrahydro-2H-indeno[1,2-b]furan-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5DJ5 _cell.length_a 48.4 _cell.length_b 87.88 _cell.length_c 118.57 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DJ5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H14 O5' _chem_comp.formula_weight 298.29 _chem_comp.id GR2 _chem_comp.mon_nstd_flag . _chem_comp.name (3E,3aR,8bS)-3-({[(2R)-4-methyl-5-oxo-2,5-dihydrofuran-2-yl]oxy}methylidene)-3,3a,4,8b-tetrahydro-2H-indeno[1,2-b]furan-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3 C2 GR2 doub 129 n y C3 C4 GR2 sing 130 n y C2 C1 GR2 sing 131 n y C4 C5 GR2 doub 132 n y C1 C9 GR2 sing 133 n n C1 C6 GR2 doub 134 n y C9 C8 GR2 sing 135 n n C5 C6 GR2 sing 136 n y C6 C7 GR2 sing 137 n n C8 C7 GR2 sing 138 n n C8 C11 GR2 sing 139 n n C7 O2 GR2 sing 140 n n O3 C13 GR2 sing 141 n n O3 C12 GR2 sing 142 n n O5 C13 GR2 sing 143 n n O5 C16 GR2 sing 144 n n C13 C14 GR2 sing 145 n n C11 C12 GR2 doub 146 e n C11 C10 GR2 sing 147 n n O2 C10 GR2 sing 148 n n C16 O4 GR2 doub 149 n n C16 C15 GR2 sing 150 n n C14 C15 GR2 doub 151 n n C10 O1 GR2 doub 152 n n C15 C17 GR2 sing 153 n n C2 H1 GR2 sing 154 n n C3 H2 GR2 sing 155 n n C4 H3 GR2 sing 156 n n C5 H4 GR2 sing 157 n n C7 H5 GR2 sing 158 n n C8 H6 GR2 sing 159 n n C9 H7 GR2 sing 160 n n C9 H8 GR2 sing 161 n n C12 H9 GR2 sing 162 n n C13 H10 GR2 sing 163 n n C14 H11 GR2 sing 164 n n C17 H12 GR2 sing 165 n n C17 H13 GR2 sing 166 n n C17 H14 GR2 sing 167 n n # _atom_sites.entry_id 5DJ5 _atom_sites.fract_transf_matrix[1][1] 0.020661 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011379 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008434 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GR2 A 1 800 800 GR2 G24 . D 3 HOH A 1 901 161 HOH HOH . D 3 HOH A 2 902 54 HOH HOH . D 3 HOH A 3 903 136 HOH HOH . D 3 HOH A 4 904 2 HOH HOH . D 3 HOH A 5 905 101 HOH HOH . D 3 HOH A 6 906 105 HOH HOH . D 3 HOH A 7 907 15 HOH HOH . D 3 HOH A 8 908 26 HOH HOH . D 3 HOH A 9 909 56 HOH HOH . D 3 HOH A 10 910 46 HOH HOH . D 3 HOH A 11 911 13 HOH HOH . D 3 HOH A 12 912 129 HOH HOH . D 3 HOH A 13 913 25 HOH HOH . D 3 HOH A 14 914 10 HOH HOH . D 3 HOH A 15 915 40 HOH HOH . D 3 HOH A 16 916 50 HOH HOH . D 3 HOH A 17 917 32 HOH HOH . D 3 HOH A 18 918 14 HOH HOH . D 3 HOH A 19 919 141 HOH HOH . D 3 HOH A 20 920 18 HOH HOH . D 3 HOH A 21 921 60 HOH HOH . D 3 HOH A 22 922 144 HOH HOH . D 3 HOH A 23 923 87 HOH HOH . D 3 HOH A 24 924 148 HOH HOH . D 3 HOH A 25 925 29 HOH HOH . D 3 HOH A 26 926 55 HOH HOH . D 3 HOH A 27 927 97 HOH HOH . D 3 HOH A 28 928 122 HOH HOH . D 3 HOH A 29 929 103 HOH HOH . D 3 HOH A 30 930 6 HOH HOH . D 3 HOH A 31 931 121 HOH HOH . D 3 HOH A 32 932 20 HOH HOH . D 3 HOH A 33 933 36 HOH HOH . D 3 HOH A 34 934 89 HOH HOH . D 3 HOH A 35 935 80 HOH HOH . D 3 HOH A 36 936 96 HOH HOH . D 3 HOH A 37 937 109 HOH HOH . D 3 HOH A 38 938 102 HOH HOH . D 3 HOH A 39 939 67 HOH HOH . D 3 HOH A 40 940 43 HOH HOH . D 3 HOH A 41 941 11 HOH HOH . D 3 HOH A 42 942 149 HOH HOH . D 3 HOH A 43 943 42 HOH HOH . D 3 HOH A 44 944 98 HOH HOH . D 3 HOH A 45 945 157 HOH HOH . D 3 HOH A 46 946 88 HOH HOH . D 3 HOH A 47 947 90 HOH HOH . D 3 HOH A 48 948 82 HOH HOH . D 3 HOH A 49 949 133 HOH HOH . D 3 HOH A 50 950 114 HOH HOH . D 3 HOH A 51 951 156 HOH HOH . D 3 HOH A 52 952 59 HOH HOH . D 3 HOH A 53 953 130 HOH HOH . D 3 HOH A 54 954 85 HOH HOH . D 3 HOH A 55 955 19 HOH HOH . D 3 HOH A 56 956 110 HOH HOH . D 3 HOH A 57 957 99 HOH HOH . D 3 HOH A 58 958 153 HOH HOH . D 3 HOH A 59 959 51 HOH HOH . D 3 HOH A 60 960 115 HOH HOH . D 3 HOH A 61 961 95 HOH HOH . D 3 HOH A 62 962 84 HOH HOH . D 3 HOH A 63 963 158 HOH HOH . D 3 HOH A 64 964 143 HOH HOH . D 3 HOH A 65 965 162 HOH HOH . D 3 HOH A 66 966 124 HOH HOH . E 3 HOH B 1 301 35 HOH HOH . E 3 HOH B 2 302 139 HOH HOH . E 3 HOH B 3 303 27 HOH HOH . E 3 HOH B 4 304 119 HOH HOH . E 3 HOH B 5 305 77 HOH HOH . E 3 HOH B 6 306 72 HOH HOH . E 3 HOH B 7 307 76 HOH HOH . E 3 HOH B 8 308 53 HOH HOH . E 3 HOH B 9 309 12 HOH HOH . E 3 HOH B 10 310 5 HOH HOH . E 3 HOH B 11 311 21 HOH HOH . E 3 HOH B 12 312 24 HOH HOH . E 3 HOH B 13 313 57 HOH HOH . E 3 HOH B 14 314 52 HOH HOH . E 3 HOH B 15 315 81 HOH HOH . E 3 HOH B 16 316 1 HOH HOH . E 3 HOH B 17 317 65 HOH HOH . E 3 HOH B 18 318 83 HOH HOH . E 3 HOH B 19 319 47 HOH HOH . E 3 HOH B 20 320 7 HOH HOH . E 3 HOH B 21 321 3 HOH HOH . E 3 HOH B 22 322 68 HOH HOH . E 3 HOH B 23 323 39 HOH HOH . E 3 HOH B 24 324 48 HOH HOH . E 3 HOH B 25 325 127 HOH HOH . E 3 HOH B 26 326 106 HOH HOH . E 3 HOH B 27 327 63 HOH HOH . E 3 HOH B 28 328 147 HOH HOH . E 3 HOH B 29 329 66 HOH HOH . E 3 HOH B 30 330 17 HOH HOH . E 3 HOH B 31 331 137 HOH HOH . E 3 HOH B 32 332 16 HOH HOH . E 3 HOH B 33 333 9 HOH HOH . E 3 HOH B 34 334 117 HOH HOH . E 3 HOH B 35 335 33 HOH HOH . E 3 HOH B 36 336 155 HOH HOH . E 3 HOH B 37 337 138 HOH HOH . E 3 HOH B 38 338 100 HOH HOH . E 3 HOH B 39 339 37 HOH HOH . E 3 HOH B 40 340 31 HOH HOH . E 3 HOH B 41 341 112 HOH HOH . E 3 HOH B 42 342 131 HOH HOH . E 3 HOH B 43 343 78 HOH HOH . E 3 HOH B 44 344 125 HOH HOH . E 3 HOH B 45 345 111 HOH HOH . E 3 HOH B 46 346 108 HOH HOH . E 3 HOH B 47 347 41 HOH HOH . E 3 HOH B 48 348 70 HOH HOH . E 3 HOH B 49 349 30 HOH HOH . E 3 HOH B 50 350 120 HOH HOH . E 3 HOH B 51 351 64 HOH HOH . E 3 HOH B 52 352 38 HOH HOH . E 3 HOH B 53 353 22 HOH HOH . E 3 HOH B 54 354 34 HOH HOH . E 3 HOH B 55 355 151 HOH HOH . E 3 HOH B 56 356 132 HOH HOH . E 3 HOH B 57 357 4 HOH HOH . E 3 HOH B 58 358 71 HOH HOH . E 3 HOH B 59 359 142 HOH HOH . E 3 HOH B 60 360 74 HOH HOH . E 3 HOH B 61 361 45 HOH HOH . E 3 HOH B 62 362 91 HOH HOH . E 3 HOH B 63 363 23 HOH HOH . E 3 HOH B 64 364 44 HOH HOH . E 3 HOH B 65 365 69 HOH HOH . E 3 HOH B 66 366 61 HOH HOH . E 3 HOH B 67 367 58 HOH HOH . E 3 HOH B 68 368 73 HOH HOH . E 3 HOH B 69 369 134 HOH HOH . E 3 HOH B 70 370 118 HOH HOH . E 3 HOH B 71 371 75 HOH HOH . E 3 HOH B 72 372 123 HOH HOH . E 3 HOH B 73 373 62 HOH HOH . E 3 HOH B 74 374 128 HOH HOH . E 3 HOH B 75 375 140 HOH HOH . E 3 HOH B 76 376 104 HOH HOH . E 3 HOH B 77 377 86 HOH HOH . E 3 HOH B 78 378 160 HOH HOH . E 3 HOH B 79 379 79 HOH HOH . E 3 HOH B 80 380 8 HOH HOH . E 3 HOH B 81 381 49 HOH HOH . E 3 HOH B 82 382 94 HOH HOH . E 3 HOH B 83 383 126 HOH HOH . E 3 HOH B 84 384 28 HOH HOH . E 3 HOH B 85 385 116 HOH HOH . E 3 HOH B 86 386 93 HOH HOH . E 3 HOH B 87 387 113 HOH HOH . E 3 HOH B 88 388 150 HOH HOH . E 3 HOH B 89 389 107 HOH HOH . E 3 HOH B 90 390 92 HOH HOH . E 3 HOH B 91 391 163 HOH HOH . E 3 HOH B 92 392 159 HOH HOH . E 3 HOH B 93 393 135 HOH HOH . E 3 HOH B 94 394 154 HOH HOH . E 3 HOH B 95 395 146 HOH HOH . E 3 HOH B 96 396 152 HOH HOH . E 3 HOH B 97 397 145 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GR2 . . . C 2 -33.304 14.25 -23.293 1 61.44 ? C1 GR2 800 A 1 HETATM 2 C C2 GR2 . . . C 2 -33.833 13.667 -24.452 1 62.21 ? C2 GR2 800 A 1 HETATM 3 C C3 GR2 . . . C 2 -35.214 13.562 -24.668 1 61.89 ? C3 GR2 800 A 1 HETATM 4 C C4 GR2 . . . C 2 -36.101 14.042 -23.701 1 62.82 ? C4 GR2 800 A 1 HETATM 5 C C5 GR2 . . . C 2 -35.585 14.625 -22.538 1 66.81 ? C5 GR2 800 A 1 HETATM 6 C C6 GR2 . . . C 2 -34.2 14.733 -22.324 1 62.8 ? C6 GR2 800 A 1 HETATM 7 C C7 GR2 . . . C 2 -33.398 15.328 -21.155 1 58.9 ? C7 GR2 800 A 1 HETATM 8 C C8 GR2 . . . C 2 -31.937 15.424 -21.647 1 60.59 ? C8 GR2 800 A 1 HETATM 9 C C9 GR2 . . . C 2 -31.845 14.475 -22.855 1 46.28 ? C9 GR2 800 A 1 HETATM 10 C C10 GR2 . . . C 2 -32.112 14.412 -19.479 1 57.95 ? C10 GR2 800 A 1 HETATM 11 C C11 GR2 . . . C 2 -31.147 14.974 -20.449 1 57.19 ? C11 GR2 800 A 1 HETATM 12 C C12 GR2 . . . C 2 -29.832 15.085 -20.21 1 54.36 ? C12 GR2 800 A 1 HETATM 13 C C13 GR2 . . . C 2 -27.635 15.365 -20.686 1 53.44 ? C13 GR2 800 A 1 HETATM 14 C C14 GR2 . . . C 2 -27.117 16.051 -19.59 1 46.31 ? C14 GR2 800 A 1 HETATM 15 C C15 GR2 . . . C 2 -26.249 15.293 -18.947 1 40.55 ? C15 GR2 800 A 1 HETATM 16 C C16 GR2 . . . C 2 -26.113 14.012 -19.704 1 43.17 ? C16 GR2 800 A 1 HETATM 17 C C17 GR2 . . . C 2 -25.512 15.746 -17.681 1 39.32 ? C17 GR2 800 A 1 HETATM 18 O O1 GR2 . . . C 2 -31.774 13.978 -18.402 1 57.24 ? O1 GR2 800 A 1 HETATM 19 O O2 GR2 . . . C 2 -33.448 14.457 -19.996 1 62.79 ? O2 GR2 800 A 1 HETATM 20 O O3 GR2 . . . C 2 -28.926 15.638 -21.139 1 62.54 ? O3 GR2 800 A 1 HETATM 21 O O4 GR2 . . . C 2 -25.383 13.08 -19.444 1 45.83 ? O4 GR2 800 A 1 HETATM 22 O O5 GR2 . . . C 2 -26.994 14.096 -20.826 1 48.67 ? O5 GR2 800 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #