data_5DJM # _model_server_result.job_id c-6C6jauKyVet6KQ6173qQ _model_server_result.datetime_utc '2024-11-23 11:48:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5djm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 5DJM # _exptl.entry_id 5DJM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 195.237 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.85 _cell.angle_gamma 90 _cell.entry_id 5DJM _cell.length_a 77.517 _cell.length_b 90.13 _cell.length_c 68.943 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DJM _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 102 A CYS 101 1_555 D PT PT . A PT 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc2 A SG CYS 102 A CYS 101 1_555 E PT PT . A PT 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc3 D PT PT . A PT 302 1_555 B SG CYS 102 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc4 B SG CYS 102 B CYS 101 1_555 G PT PT . B PT 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? # _chem_comp.formula 'C6 H13 N O4 S' _chem_comp.formula_weight 195.237 _chem_comp.id MES _chem_comp.mon_nstd_flag . _chem_comp.name '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 MES sing 218 n n O1 C6 MES sing 219 n n C2 C3 MES sing 220 n n C2 H21 MES sing 221 n n C2 H22 MES sing 222 n n C3 N4 MES sing 223 n n C3 H31 MES sing 224 n n C3 H32 MES sing 225 n n N4 C5 MES sing 226 n n N4 C7 MES sing 227 n n N4 HN4 MES sing 228 n n C5 C6 MES sing 229 n n C5 H51 MES sing 230 n n C5 H52 MES sing 231 n n C6 H61 MES sing 232 n n C6 H62 MES sing 233 n n C7 C8 MES sing 234 n n C7 H71 MES sing 235 n n C7 H72 MES sing 236 n n C8 S MES sing 237 n n C8 H81 MES sing 238 n n C8 H82 MES sing 239 n n S O1S MES doub 240 n n S O2S MES doub 241 n n S O3S MES sing 242 n n # _atom_sites.entry_id 5DJM _atom_sites.fract_transf_matrix[1][1] 0.0129 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001778 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011095 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014642 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MES A 1 301 2 MES MES . D 3 PT A 1 302 1 PT PT . E 3 PT A 1 303 3 PT PT . F 2 MES B 1 301 1 MES MES . G 3 PT B 1 302 2 PT PT . H 4 HOH A 1 401 102 HOH HOH . H 4 HOH A 2 402 93 HOH HOH . H 4 HOH A 3 403 8 HOH HOH . H 4 HOH A 4 404 5 HOH HOH . H 4 HOH A 5 405 24 HOH HOH . H 4 HOH A 6 406 9 HOH HOH . H 4 HOH A 7 407 42 HOH HOH . H 4 HOH A 8 408 35 HOH HOH . H 4 HOH A 9 409 11 HOH HOH . H 4 HOH A 10 410 52 HOH HOH . H 4 HOH A 11 411 41 HOH HOH . H 4 HOH A 12 412 69 HOH HOH . H 4 HOH A 13 413 91 HOH HOH . H 4 HOH A 14 414 36 HOH HOH . H 4 HOH A 15 415 43 HOH HOH . H 4 HOH A 16 416 80 HOH HOH . H 4 HOH A 17 417 3 HOH HOH . H 4 HOH A 18 418 32 HOH HOH . H 4 HOH A 19 419 6 HOH HOH . H 4 HOH A 20 420 51 HOH HOH . H 4 HOH A 21 421 44 HOH HOH . H 4 HOH A 22 422 25 HOH HOH . H 4 HOH A 23 423 45 HOH HOH . H 4 HOH A 24 424 76 HOH HOH . H 4 HOH A 25 425 68 HOH HOH . H 4 HOH A 26 426 4 HOH HOH . H 4 HOH A 27 427 73 HOH HOH . H 4 HOH A 28 428 96 HOH HOH . H 4 HOH A 29 429 84 HOH HOH . H 4 HOH A 30 430 75 HOH HOH . H 4 HOH A 31 431 7 HOH HOH . H 4 HOH A 32 432 70 HOH HOH . H 4 HOH A 33 433 2 HOH HOH . H 4 HOH A 34 434 77 HOH HOH . H 4 HOH A 35 435 27 HOH HOH . H 4 HOH A 36 436 79 HOH HOH . H 4 HOH A 37 437 72 HOH HOH . H 4 HOH A 38 438 28 HOH HOH . H 4 HOH A 39 439 33 HOH HOH . H 4 HOH A 40 440 74 HOH HOH . H 4 HOH A 41 441 1 HOH HOH . H 4 HOH A 42 442 82 HOH HOH . H 4 HOH A 43 443 83 HOH HOH . H 4 HOH A 44 444 87 HOH HOH . H 4 HOH A 45 445 92 HOH HOH . H 4 HOH A 46 446 81 HOH HOH . H 4 HOH A 47 447 78 HOH HOH . H 4 HOH A 48 448 71 HOH HOH . H 4 HOH A 49 449 95 HOH HOH . I 4 HOH B 1 401 10 HOH HOH . I 4 HOH B 2 402 40 HOH HOH . I 4 HOH B 3 403 60 HOH HOH . I 4 HOH B 4 404 90 HOH HOH . I 4 HOH B 5 405 48 HOH HOH . I 4 HOH B 6 406 21 HOH HOH . I 4 HOH B 7 407 30 HOH HOH . I 4 HOH B 8 408 39 HOH HOH . I 4 HOH B 9 409 55 HOH HOH . I 4 HOH B 10 410 89 HOH HOH . I 4 HOH B 11 411 16 HOH HOH . I 4 HOH B 12 412 18 HOH HOH . I 4 HOH B 13 413 49 HOH HOH . I 4 HOH B 14 414 20 HOH HOH . I 4 HOH B 15 415 54 HOH HOH . I 4 HOH B 16 416 31 HOH HOH . I 4 HOH B 17 417 99 HOH HOH . I 4 HOH B 18 418 13 HOH HOH . I 4 HOH B 19 419 19 HOH HOH . I 4 HOH B 20 420 59 HOH HOH . I 4 HOH B 21 421 12 HOH HOH . I 4 HOH B 22 422 100 HOH HOH . I 4 HOH B 23 423 14 HOH HOH . I 4 HOH B 24 424 50 HOH HOH . I 4 HOH B 25 425 65 HOH HOH . I 4 HOH B 26 426 29 HOH HOH . I 4 HOH B 27 427 34 HOH HOH . I 4 HOH B 28 428 64 HOH HOH . I 4 HOH B 29 429 62 HOH HOH . I 4 HOH B 30 430 37 HOH HOH . I 4 HOH B 31 431 67 HOH HOH . I 4 HOH B 32 432 66 HOH HOH . I 4 HOH B 33 433 47 HOH HOH . I 4 HOH B 34 434 22 HOH HOH . I 4 HOH B 35 435 105 HOH HOH . I 4 HOH B 36 436 23 HOH HOH . I 4 HOH B 37 437 53 HOH HOH . I 4 HOH B 38 438 56 HOH HOH . I 4 HOH B 39 439 46 HOH HOH . I 4 HOH B 40 440 26 HOH HOH . I 4 HOH B 41 441 17 HOH HOH . I 4 HOH B 42 442 15 HOH HOH . I 4 HOH B 43 443 101 HOH HOH . I 4 HOH B 44 444 58 HOH HOH . I 4 HOH B 45 445 38 HOH HOH . I 4 HOH B 46 446 88 HOH HOH . I 4 HOH B 47 447 98 HOH HOH . I 4 HOH B 48 448 103 HOH HOH . I 4 HOH B 49 449 104 HOH HOH . I 4 HOH B 50 450 86 HOH HOH . I 4 HOH B 51 451 57 HOH HOH . I 4 HOH B 52 452 61 HOH HOH . I 4 HOH B 53 453 85 HOH HOH . I 4 HOH B 54 454 97 HOH HOH . I 4 HOH B 55 455 63 HOH HOH . I 4 HOH B 56 456 94 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 MES . . . F 2 94.3 31.065 68.617 1 37.12 ? O1 MES 301 B 1 HETATM 2 C C2 MES . . . F 2 94.375 30.168 69.73 1 36.01 ? C2 MES 301 B 1 HETATM 3 C C3 MES . . . F 2 95.026 30.75 70.993 1 36.97 ? C3 MES 301 B 1 HETATM 4 N N4 MES . . . F 2 95.168 32.216 71.046 1 38 ? N4 MES 301 B 1 HETATM 5 C C5 MES . . . F 2 94.799 32.999 69.882 1 40.24 ? C5 MES 301 B 1 HETATM 6 C C6 MES . . . F 2 95.218 32.14 68.711 1 39.46 ? C6 MES 301 B 1 HETATM 7 C C7 MES . . . F 2 94.901 32.84 72.338 1 42.71 ? C7 MES 301 B 1 HETATM 8 C C8 MES . . . F 2 96.289 33.244 72.825 1 45.5 ? C8 MES 301 B 1 HETATM 9 S S MES . . . F 2 96.242 34.246 74.14 1 50.11 ? S MES 301 B 1 HETATM 10 O O1S MES . . . F 2 97.222 35.32 73.898 1 56.16 ? O1S MES 301 B 1 HETATM 11 O O2S MES . . . F 2 94.903 34.875 74.378 1 44.21 ? O2S MES 301 B 1 HETATM 12 O O3S MES . . . F 2 96.722 33.501 75.329 1 47.03 ? O3S MES 301 B 1 HETATM 13 H H21 MES . . . F 2 93.361 29.852 69.981 1 43.22 ? H21 MES 301 B 1 HETATM 14 H H22 MES . . . F 2 94.924 29.272 69.431 1 43.22 ? H22 MES 301 B 1 HETATM 15 H H31 MES . . . F 2 94.452 30.427 71.864 1 44.36 ? H31 MES 301 B 1 HETATM 16 H H32 MES . . . F 2 96.019 30.31 71.098 1 44.36 ? H32 MES 301 B 1 HETATM 17 H HN4 MES . . . F 2 96.173 32.3 71.006 1 45.6 ? HN4 MES 301 B 1 HETATM 18 H H51 MES . . . F 2 93.723 33.185 69.863 1 48.28 ? H51 MES 301 B 1 HETATM 19 H H52 MES . . . F 2 95.33 33.953 69.872 1 48.28 ? H52 MES 301 B 1 HETATM 20 H H61 MES . . . F 2 95.215 32.73 67.792 1 47.35 ? H61 MES 301 B 1 HETATM 21 H H62 MES . . . F 2 96.231 31.763 68.868 1 47.35 ? H62 MES 301 B 1 HETATM 22 H H71 MES . . . F 2 94.436 32.131 73.026 1 51.25 ? H71 MES 301 B 1 HETATM 23 H H72 MES . . . F 2 94.257 33.715 72.225 1 51.25 ? H72 MES 301 B 1 HETATM 24 H H81 MES . . . F 2 96.852 32.344 73.082 1 54.6 ? H81 MES 301 B 1 HETATM 25 H H82 MES . . . F 2 96.82 33.744 72.013 1 54.6 ? H82 MES 301 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 25 #