data_5DJO # _model_server_result.job_id z70C3XGQqyyyHM1Q93Ybeg _model_server_result.datetime_utc '2025-02-05 18:06:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5djo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":204}' # _entry.id 5DJO # _exptl.entry_id 5DJO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.97 _cell.angle_gamma 90 _cell.entry_id 5DJO _cell.length_a 99.154 _cell.length_b 50.014 _cell.length_c 66.941 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DJO _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 248 n n C1 C2 PEG sing 249 n n C1 H11 PEG sing 250 n n C1 H12 PEG sing 251 n n O1 HO1 PEG sing 252 n n C2 O2 PEG sing 253 n n C2 H21 PEG sing 254 n n C2 H22 PEG sing 255 n n O2 C3 PEG sing 256 n n C3 C4 PEG sing 257 n n C3 H31 PEG sing 258 n n C3 H32 PEG sing 259 n n C4 O4 PEG sing 260 n n C4 H41 PEG sing 261 n n C4 H42 PEG sing 262 n n O4 HO4 PEG sing 263 n n # _atom_sites.entry_id 5DJO _atom_sites.fract_transf_matrix[1][1] 0.010085 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000347 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019994 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014947 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMT A 1 201 1 FMT FMT . D 2 FMT A 1 202 2 FMT FMT . E 2 FMT A 1 203 3 FMT FMT . F 2 FMT B 1 201 4 FMT FMT . G 3 ACY B 1 202 5 ACY ACY . H 2 FMT B 1 203 6 FMT FMT . I 4 PEG B 1 204 7 PEG PEG . J 5 HOH A 1 301 246 HOH HOH . J 5 HOH A 2 302 214 HOH HOH . J 5 HOH A 3 303 266 HOH HOH . J 5 HOH A 4 304 222 HOH HOH . J 5 HOH A 5 305 237 HOH HOH . J 5 HOH A 6 306 84 HOH HOH . J 5 HOH A 7 307 263 HOH HOH . J 5 HOH A 8 308 262 HOH HOH . J 5 HOH A 9 309 143 HOH HOH . J 5 HOH A 10 310 218 HOH HOH . J 5 HOH A 11 311 115 HOH HOH . J 5 HOH A 12 312 213 HOH HOH . J 5 HOH A 13 313 256 HOH HOH . J 5 HOH A 14 314 55 HOH HOH . J 5 HOH A 15 315 178 HOH HOH . J 5 HOH A 16 316 225 HOH HOH . J 5 HOH A 17 317 24 HOH HOH . J 5 HOH A 18 318 117 HOH HOH . J 5 HOH A 19 319 234 HOH HOH . J 5 HOH A 20 320 257 HOH HOH . J 5 HOH A 21 321 61 HOH HOH . J 5 HOH A 22 322 247 HOH HOH . J 5 HOH A 23 323 159 HOH HOH . J 5 HOH A 24 324 33 HOH HOH . J 5 HOH A 25 325 12 HOH HOH . J 5 HOH A 26 326 153 HOH HOH . J 5 HOH A 27 327 14 HOH HOH . J 5 HOH A 28 328 259 HOH HOH . J 5 HOH A 29 329 17 HOH HOH . J 5 HOH A 30 330 10 HOH HOH . J 5 HOH A 31 331 221 HOH HOH . J 5 HOH A 32 332 76 HOH HOH . J 5 HOH A 33 333 75 HOH HOH . J 5 HOH A 34 334 174 HOH HOH . J 5 HOH A 35 335 51 HOH HOH . J 5 HOH A 36 336 185 HOH HOH . J 5 HOH A 37 337 25 HOH HOH . J 5 HOH A 38 338 1 HOH HOH . J 5 HOH A 39 339 120 HOH HOH . J 5 HOH A 40 340 38 HOH HOH . J 5 HOH A 41 341 20 HOH HOH . J 5 HOH A 42 342 63 HOH HOH . J 5 HOH A 43 343 223 HOH HOH . J 5 HOH A 44 344 53 HOH HOH . J 5 HOH A 45 345 52 HOH HOH . J 5 HOH A 46 346 28 HOH HOH . J 5 HOH A 47 347 4 HOH HOH . J 5 HOH A 48 348 49 HOH HOH . J 5 HOH A 49 349 144 HOH HOH . J 5 HOH A 50 350 264 HOH HOH . J 5 HOH A 51 351 2 HOH HOH . J 5 HOH A 52 352 187 HOH HOH . J 5 HOH A 53 353 29 HOH HOH . J 5 HOH A 54 354 156 HOH HOH . J 5 HOH A 55 355 71 HOH HOH . J 5 HOH A 56 356 6 HOH HOH . J 5 HOH A 57 357 253 HOH HOH . J 5 HOH A 58 358 43 HOH HOH . J 5 HOH A 59 359 68 HOH HOH . J 5 HOH A 60 360 186 HOH HOH . J 5 HOH A 61 361 64 HOH HOH . J 5 HOH A 62 362 83 HOH HOH . J 5 HOH A 63 363 108 HOH HOH . J 5 HOH A 64 364 3 HOH HOH . J 5 HOH A 65 365 5 HOH HOH . J 5 HOH A 66 366 100 HOH HOH . J 5 HOH A 67 367 23 HOH HOH . J 5 HOH A 68 368 119 HOH HOH . J 5 HOH A 69 369 18 HOH HOH . J 5 HOH A 70 370 57 HOH HOH . J 5 HOH A 71 371 8 HOH HOH . J 5 HOH A 72 372 96 HOH HOH . J 5 HOH A 73 373 211 HOH HOH . J 5 HOH A 74 374 85 HOH HOH . J 5 HOH A 75 375 107 HOH HOH . J 5 HOH A 76 376 206 HOH HOH . J 5 HOH A 77 377 9 HOH HOH . J 5 HOH A 78 378 160 HOH HOH . J 5 HOH A 79 379 31 HOH HOH . J 5 HOH A 80 380 7 HOH HOH . J 5 HOH A 81 381 116 HOH HOH . J 5 HOH A 82 382 142 HOH HOH . J 5 HOH A 83 383 93 HOH HOH . J 5 HOH A 84 384 202 HOH HOH . J 5 HOH A 85 385 99 HOH HOH . J 5 HOH A 86 386 89 HOH HOH . J 5 HOH A 87 387 102 HOH HOH . J 5 HOH A 88 388 59 HOH HOH . J 5 HOH A 89 389 258 HOH HOH . J 5 HOH A 90 390 41 HOH HOH . J 5 HOH A 91 391 128 HOH HOH . J 5 HOH A 92 392 106 HOH HOH . J 5 HOH A 93 393 166 HOH HOH . J 5 HOH A 94 394 19 HOH HOH . J 5 HOH A 95 395 141 HOH HOH . J 5 HOH A 96 396 81 HOH HOH . J 5 HOH A 97 397 114 HOH HOH . J 5 HOH A 98 398 39 HOH HOH . J 5 HOH A 99 399 98 HOH HOH . J 5 HOH A 100 400 42 HOH HOH . J 5 HOH A 101 401 121 HOH HOH . J 5 HOH A 102 402 151 HOH HOH . J 5 HOH A 103 403 169 HOH HOH . J 5 HOH A 104 404 74 HOH HOH . J 5 HOH A 105 405 195 HOH HOH . J 5 HOH A 106 406 183 HOH HOH . J 5 HOH A 107 407 72 HOH HOH . J 5 HOH A 108 408 200 HOH HOH . J 5 HOH A 109 409 113 HOH HOH . J 5 HOH A 110 410 127 HOH HOH . J 5 HOH A 111 411 131 HOH HOH . J 5 HOH A 112 412 148 HOH HOH . J 5 HOH A 113 413 123 HOH HOH . J 5 HOH A 114 414 233 HOH HOH . J 5 HOH A 115 415 193 HOH HOH . J 5 HOH A 116 416 172 HOH HOH . J 5 HOH A 117 417 45 HOH HOH . J 5 HOH A 118 418 180 HOH HOH . J 5 HOH A 119 419 250 HOH HOH . J 5 HOH A 120 420 110 HOH HOH . J 5 HOH A 121 421 179 HOH HOH . J 5 HOH A 122 422 248 HOH HOH . J 5 HOH A 123 423 78 HOH HOH . J 5 HOH A 124 424 70 HOH HOH . J 5 HOH A 125 425 109 HOH HOH . J 5 HOH A 126 426 201 HOH HOH . J 5 HOH A 127 427 101 HOH HOH . J 5 HOH A 128 428 165 HOH HOH . J 5 HOH A 129 429 150 HOH HOH . J 5 HOH A 130 430 87 HOH HOH . J 5 HOH A 131 431 58 HOH HOH . J 5 HOH A 132 432 215 HOH HOH . J 5 HOH A 133 433 137 HOH HOH . J 5 HOH A 134 434 265 HOH HOH . J 5 HOH A 135 435 249 HOH HOH . J 5 HOH A 136 436 210 HOH HOH . J 5 HOH A 137 437 212 HOH HOH . J 5 HOH A 138 438 203 HOH HOH . K 5 HOH B 1 301 50 HOH HOH . K 5 HOH B 2 302 34 HOH HOH . K 5 HOH B 3 303 220 HOH HOH . K 5 HOH B 4 304 90 HOH HOH . K 5 HOH B 5 305 130 HOH HOH . K 5 HOH B 6 306 157 HOH HOH . K 5 HOH B 7 307 133 HOH HOH . K 5 HOH B 8 308 228 HOH HOH . K 5 HOH B 9 309 135 HOH HOH . K 5 HOH B 10 310 243 HOH HOH . K 5 HOH B 11 311 66 HOH HOH . K 5 HOH B 12 312 37 HOH HOH . K 5 HOH B 13 313 261 HOH HOH . K 5 HOH B 14 314 162 HOH HOH . K 5 HOH B 15 315 188 HOH HOH . K 5 HOH B 16 316 152 HOH HOH . K 5 HOH B 17 317 140 HOH HOH . K 5 HOH B 18 318 30 HOH HOH . K 5 HOH B 19 319 158 HOH HOH . K 5 HOH B 20 320 190 HOH HOH . K 5 HOH B 21 321 196 HOH HOH . K 5 HOH B 22 322 11 HOH HOH . K 5 HOH B 23 323 16 HOH HOH . K 5 HOH B 24 324 176 HOH HOH . K 5 HOH B 25 325 47 HOH HOH . K 5 HOH B 26 326 27 HOH HOH . K 5 HOH B 27 327 232 HOH HOH . K 5 HOH B 28 328 209 HOH HOH . K 5 HOH B 29 329 69 HOH HOH . K 5 HOH B 30 330 168 HOH HOH . K 5 HOH B 31 331 238 HOH HOH . K 5 HOH B 32 332 112 HOH HOH . K 5 HOH B 33 333 22 HOH HOH . K 5 HOH B 34 334 191 HOH HOH . K 5 HOH B 35 335 44 HOH HOH . K 5 HOH B 36 336 182 HOH HOH . K 5 HOH B 37 337 125 HOH HOH . K 5 HOH B 38 338 54 HOH HOH . K 5 HOH B 39 339 26 HOH HOH . K 5 HOH B 40 340 122 HOH HOH . K 5 HOH B 41 341 80 HOH HOH . K 5 HOH B 42 342 95 HOH HOH . K 5 HOH B 43 343 82 HOH HOH . K 5 HOH B 44 344 21 HOH HOH . K 5 HOH B 45 345 242 HOH HOH . K 5 HOH B 46 346 217 HOH HOH . K 5 HOH B 47 347 170 HOH HOH . K 5 HOH B 48 348 13 HOH HOH . K 5 HOH B 49 349 92 HOH HOH . K 5 HOH B 50 350 79 HOH HOH . K 5 HOH B 51 351 105 HOH HOH . K 5 HOH B 52 352 171 HOH HOH . K 5 HOH B 53 353 136 HOH HOH . K 5 HOH B 54 354 103 HOH HOH . K 5 HOH B 55 355 219 HOH HOH . K 5 HOH B 56 356 207 HOH HOH . K 5 HOH B 57 357 129 HOH HOH . K 5 HOH B 58 358 155 HOH HOH . K 5 HOH B 59 359 15 HOH HOH . K 5 HOH B 60 360 118 HOH HOH . K 5 HOH B 61 361 56 HOH HOH . K 5 HOH B 62 362 88 HOH HOH . K 5 HOH B 63 363 60 HOH HOH . K 5 HOH B 64 364 235 HOH HOH . K 5 HOH B 65 365 35 HOH HOH . K 5 HOH B 66 366 67 HOH HOH . K 5 HOH B 67 367 139 HOH HOH . K 5 HOH B 68 368 104 HOH HOH . K 5 HOH B 69 369 138 HOH HOH . K 5 HOH B 70 370 189 HOH HOH . K 5 HOH B 71 371 124 HOH HOH . K 5 HOH B 72 372 40 HOH HOH . K 5 HOH B 73 373 111 HOH HOH . K 5 HOH B 74 374 65 HOH HOH . K 5 HOH B 75 375 192 HOH HOH . K 5 HOH B 76 376 62 HOH HOH . K 5 HOH B 77 377 146 HOH HOH . K 5 HOH B 78 378 145 HOH HOH . K 5 HOH B 79 379 36 HOH HOH . K 5 HOH B 80 380 231 HOH HOH . K 5 HOH B 81 381 204 HOH HOH . K 5 HOH B 82 382 32 HOH HOH . K 5 HOH B 83 383 132 HOH HOH . K 5 HOH B 84 384 161 HOH HOH . K 5 HOH B 85 385 244 HOH HOH . K 5 HOH B 86 386 198 HOH HOH . K 5 HOH B 87 387 86 HOH HOH . K 5 HOH B 88 388 194 HOH HOH . K 5 HOH B 89 389 177 HOH HOH . K 5 HOH B 90 390 149 HOH HOH . K 5 HOH B 91 391 97 HOH HOH . K 5 HOH B 92 392 260 HOH HOH . K 5 HOH B 93 393 46 HOH HOH . K 5 HOH B 94 394 251 HOH HOH . K 5 HOH B 95 395 208 HOH HOH . K 5 HOH B 96 396 245 HOH HOH . K 5 HOH B 97 397 230 HOH HOH . K 5 HOH B 98 398 167 HOH HOH . K 5 HOH B 99 399 164 HOH HOH . K 5 HOH B 100 400 255 HOH HOH . K 5 HOH B 101 401 184 HOH HOH . K 5 HOH B 102 402 226 HOH HOH . K 5 HOH B 103 403 229 HOH HOH . K 5 HOH B 104 404 91 HOH HOH . K 5 HOH B 105 405 175 HOH HOH . K 5 HOH B 106 406 236 HOH HOH . K 5 HOH B 107 407 77 HOH HOH . K 5 HOH B 108 408 254 HOH HOH . K 5 HOH B 109 409 197 HOH HOH . K 5 HOH B 110 410 134 HOH HOH . K 5 HOH B 111 411 241 HOH HOH . K 5 HOH B 112 412 227 HOH HOH . K 5 HOH B 113 413 147 HOH HOH . K 5 HOH B 114 414 126 HOH HOH . K 5 HOH B 115 415 224 HOH HOH . K 5 HOH B 116 416 216 HOH HOH . K 5 HOH B 117 417 94 HOH HOH . K 5 HOH B 118 418 163 HOH HOH . K 5 HOH B 119 419 173 HOH HOH . K 5 HOH B 120 420 205 HOH HOH . K 5 HOH B 121 421 154 HOH HOH . K 5 HOH B 122 422 239 HOH HOH . K 5 HOH B 123 423 181 HOH HOH . K 5 HOH B 124 424 199 HOH HOH . K 5 HOH B 125 425 240 HOH HOH . K 5 HOH B 126 426 252 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . I 4 44.782 17.884 16.921 1 71.93 ? C1 PEG 204 B 1 HETATM 2 O O1 PEG . . . I 4 45.437 17.915 15.706 1 72.38 ? O1 PEG 204 B 1 HETATM 3 C C2 PEG . . . I 4 43.941 19.107 17.087 1 71.6 ? C2 PEG 204 B 1 HETATM 4 O O2 PEG . . . I 4 43.04 19.234 16.047 1 70.55 ? O2 PEG 204 B 1 HETATM 5 C C3 PEG . . . I 4 42.062 18.283 15.826 1 67.84 ? C3 PEG 204 B 1 HETATM 6 C C4 PEG . . . I 4 41.255 18.046 17.059 1 65.14 ? C4 PEG 204 B 1 HETATM 7 O O4 PEG . . . I 4 41.521 16.769 17.524 1 62.03 ? O4 PEG 204 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 367 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 7 #