data_5DJR # _model_server_result.job_id ZxxWXOS6zejHxEA2LWlsxA _model_server_result.datetime_utc '2024-11-22 13:49:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5djr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5DJR # _exptl.entry_id 5DJR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5DJR _cell.length_a 111.32 _cell.length_b 111.32 _cell.length_c 77.31 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DJR _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 111.32 111.32 38.655 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 165 n n C1 C2 GOL sing 166 n n C1 H11 GOL sing 167 n n C1 H12 GOL sing 168 n n O1 HO1 GOL sing 169 n n C2 O2 GOL sing 170 n n C2 C3 GOL sing 171 n n C2 H2 GOL sing 172 n n O2 HO2 GOL sing 173 n n C3 O3 GOL sing 174 n n C3 H31 GOL sing 175 n n C3 H32 GOL sing 176 n n O3 HO3 GOL sing 177 n n # _atom_sites.entry_id 5DJR _atom_sites.fract_transf_matrix[1][1] 0.008983 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008983 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012935 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL F 1 401 1 GOL GOL . C 2 GOL F 1 402 2 GOL GOL . D 3 5BK F 1 403 1 5BK LI1 . E 4 PO4 F 1 404 1 PO4 PO4 . F 5 HOH F 1 501 14 HOH HOH . F 5 HOH F 2 502 52 HOH HOH . F 5 HOH F 3 503 18 HOH HOH . F 5 HOH F 4 504 50 HOH HOH . F 5 HOH F 5 505 20 HOH HOH . F 5 HOH F 6 506 10 HOH HOH . F 5 HOH F 7 507 21 HOH HOH . F 5 HOH F 8 508 45 HOH HOH . F 5 HOH F 9 509 54 HOH HOH . F 5 HOH F 10 510 35 HOH HOH . F 5 HOH F 11 511 11 HOH HOH . F 5 HOH F 12 512 55 HOH HOH . F 5 HOH F 13 513 1 HOH HOH . F 5 HOH F 14 514 8 HOH HOH . F 5 HOH F 15 515 71 HOH HOH . F 5 HOH F 16 516 43 HOH HOH . F 5 HOH F 17 517 12 HOH HOH . F 5 HOH F 18 518 72 HOH HOH . F 5 HOH F 19 519 4 HOH HOH . F 5 HOH F 20 520 63 HOH HOH . F 5 HOH F 21 521 32 HOH HOH . F 5 HOH F 22 522 19 HOH HOH . F 5 HOH F 23 523 39 HOH HOH . F 5 HOH F 24 524 34 HOH HOH . F 5 HOH F 25 525 67 HOH HOH . F 5 HOH F 26 526 60 HOH HOH . F 5 HOH F 27 527 68 HOH HOH . F 5 HOH F 28 528 44 HOH HOH . F 5 HOH F 29 529 2 HOH HOH . F 5 HOH F 30 530 51 HOH HOH . F 5 HOH F 31 531 28 HOH HOH . F 5 HOH F 32 532 59 HOH HOH . F 5 HOH F 33 533 9 HOH HOH . F 5 HOH F 34 534 40 HOH HOH . F 5 HOH F 35 535 70 HOH HOH . F 5 HOH F 36 536 15 HOH HOH . F 5 HOH F 37 537 58 HOH HOH . F 5 HOH F 38 538 49 HOH HOH . F 5 HOH F 39 539 3 HOH HOH . F 5 HOH F 40 540 57 HOH HOH . F 5 HOH F 41 541 37 HOH HOH . F 5 HOH F 42 542 13 HOH HOH . F 5 HOH F 43 543 53 HOH HOH . F 5 HOH F 44 544 33 HOH HOH . F 5 HOH F 45 545 30 HOH HOH . F 5 HOH F 46 546 74 HOH HOH . F 5 HOH F 47 547 31 HOH HOH . F 5 HOH F 48 548 48 HOH HOH . F 5 HOH F 49 549 36 HOH HOH . F 5 HOH F 50 550 16 HOH HOH . F 5 HOH F 51 551 24 HOH HOH . F 5 HOH F 52 552 26 HOH HOH . F 5 HOH F 53 553 6 HOH HOH . F 5 HOH F 54 554 29 HOH HOH . F 5 HOH F 55 555 65 HOH HOH . F 5 HOH F 56 556 76 HOH HOH . F 5 HOH F 57 557 23 HOH HOH . F 5 HOH F 58 558 73 HOH HOH . F 5 HOH F 59 559 46 HOH HOH . F 5 HOH F 60 560 75 HOH HOH . F 5 HOH F 61 561 22 HOH HOH . F 5 HOH F 62 562 47 HOH HOH . F 5 HOH F 63 563 41 HOH HOH . F 5 HOH F 64 564 62 HOH HOH . F 5 HOH F 65 565 7 HOH HOH . F 5 HOH F 66 566 27 HOH HOH . F 5 HOH F 67 567 17 HOH HOH . F 5 HOH F 68 568 64 HOH HOH . F 5 HOH F 69 569 38 HOH HOH . F 5 HOH F 70 570 56 HOH HOH . F 5 HOH F 71 571 61 HOH HOH . F 5 HOH F 72 572 66 HOH HOH . F 5 HOH F 73 573 42 HOH HOH . F 5 HOH F 74 574 77 HOH HOH . F 5 HOH F 75 575 69 HOH HOH . F 5 HOH F 76 576 5 HOH HOH . F 5 HOH F 77 577 25 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 12.067 98.248 12.953 1 64.82 ? C1 GOL 401 F 1 HETATM 2 O O1 GOL . . . B 2 11.183 99.31 13.279 1 62.69 ? O1 GOL 401 F 1 HETATM 3 C C2 GOL . . . B 2 12.055 97.938 11.476 1 65.34 ? C2 GOL 401 F 1 HETATM 4 O O2 GOL . . . B 2 12.185 99.158 10.735 1 66.6 ? O2 GOL 401 F 1 HETATM 5 C C3 GOL . . . B 2 13.242 97.042 11.209 1 65 ? C3 GOL 401 F 1 HETATM 6 O O3 GOL . . . B 2 13.473 96.881 9.813 1 68.34 ? O3 GOL 401 F 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #