data_5DJR
#
_model_server_result.job_id            N5FlcRxXj1OlMWrXnGnxug 
_model_server_result.datetime_utc      '2024-11-22 14:17:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5djr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":402}' 
#
_entry.id    5DJR 
#
_exptl.entry_id    5DJR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5DJR 
_cell.length_a            111.32 
_cell.length_b            111.32 
_cell.length_c            77.31 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5DJR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 111.32 111.32 38.655 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 165 n n 
C1 C2 GOL sing 166 n n 
C1 H11 GOL sing 167 n n 
C1 H12 GOL sing 168 n n 
O1 HO1 GOL sing 169 n n 
C2 O2 GOL sing 170 n n 
C2 C3 GOL sing 171 n n 
C2 H2 GOL sing 172 n n 
O2 HO2 GOL sing 173 n n 
C3 O3 GOL sing 174 n n 
C3 H31 GOL sing 175 n n 
C3 H32 GOL sing 176 n n 
O3 HO3 GOL sing 177 n n 
#
_atom_sites.entry_id                     5DJR 
_atom_sites.fract_transf_matrix[1][1]    0.008983 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008983 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012935 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL F 1 401 1 GOL GOL . 
C 2 GOL F 1 402 2 GOL GOL . 
D 3 5BK F 1 403 1 5BK LI1 . 
E 4 PO4 F 1 404 1 PO4 PO4 . 
F 5 HOH F 1 501 14 HOH HOH . 
F 5 HOH F 2 502 52 HOH HOH . 
F 5 HOH F 3 503 18 HOH HOH . 
F 5 HOH F 4 504 50 HOH HOH . 
F 5 HOH F 5 505 20 HOH HOH . 
F 5 HOH F 6 506 10 HOH HOH . 
F 5 HOH F 7 507 21 HOH HOH . 
F 5 HOH F 8 508 45 HOH HOH . 
F 5 HOH F 9 509 54 HOH HOH . 
F 5 HOH F 10 510 35 HOH HOH . 
F 5 HOH F 11 511 11 HOH HOH . 
F 5 HOH F 12 512 55 HOH HOH . 
F 5 HOH F 13 513 1 HOH HOH . 
F 5 HOH F 14 514 8 HOH HOH . 
F 5 HOH F 15 515 71 HOH HOH . 
F 5 HOH F 16 516 43 HOH HOH . 
F 5 HOH F 17 517 12 HOH HOH . 
F 5 HOH F 18 518 72 HOH HOH . 
F 5 HOH F 19 519 4 HOH HOH . 
F 5 HOH F 20 520 63 HOH HOH . 
F 5 HOH F 21 521 32 HOH HOH . 
F 5 HOH F 22 522 19 HOH HOH . 
F 5 HOH F 23 523 39 HOH HOH . 
F 5 HOH F 24 524 34 HOH HOH . 
F 5 HOH F 25 525 67 HOH HOH . 
F 5 HOH F 26 526 60 HOH HOH . 
F 5 HOH F 27 527 68 HOH HOH . 
F 5 HOH F 28 528 44 HOH HOH . 
F 5 HOH F 29 529 2 HOH HOH . 
F 5 HOH F 30 530 51 HOH HOH . 
F 5 HOH F 31 531 28 HOH HOH . 
F 5 HOH F 32 532 59 HOH HOH . 
F 5 HOH F 33 533 9 HOH HOH . 
F 5 HOH F 34 534 40 HOH HOH . 
F 5 HOH F 35 535 70 HOH HOH . 
F 5 HOH F 36 536 15 HOH HOH . 
F 5 HOH F 37 537 58 HOH HOH . 
F 5 HOH F 38 538 49 HOH HOH . 
F 5 HOH F 39 539 3 HOH HOH . 
F 5 HOH F 40 540 57 HOH HOH . 
F 5 HOH F 41 541 37 HOH HOH . 
F 5 HOH F 42 542 13 HOH HOH . 
F 5 HOH F 43 543 53 HOH HOH . 
F 5 HOH F 44 544 33 HOH HOH . 
F 5 HOH F 45 545 30 HOH HOH . 
F 5 HOH F 46 546 74 HOH HOH . 
F 5 HOH F 47 547 31 HOH HOH . 
F 5 HOH F 48 548 48 HOH HOH . 
F 5 HOH F 49 549 36 HOH HOH . 
F 5 HOH F 50 550 16 HOH HOH . 
F 5 HOH F 51 551 24 HOH HOH . 
F 5 HOH F 52 552 26 HOH HOH . 
F 5 HOH F 53 553 6 HOH HOH . 
F 5 HOH F 54 554 29 HOH HOH . 
F 5 HOH F 55 555 65 HOH HOH . 
F 5 HOH F 56 556 76 HOH HOH . 
F 5 HOH F 57 557 23 HOH HOH . 
F 5 HOH F 58 558 73 HOH HOH . 
F 5 HOH F 59 559 46 HOH HOH . 
F 5 HOH F 60 560 75 HOH HOH . 
F 5 HOH F 61 561 22 HOH HOH . 
F 5 HOH F 62 562 47 HOH HOH . 
F 5 HOH F 63 563 41 HOH HOH . 
F 5 HOH F 64 564 62 HOH HOH . 
F 5 HOH F 65 565 7 HOH HOH . 
F 5 HOH F 66 566 27 HOH HOH . 
F 5 HOH F 67 567 17 HOH HOH . 
F 5 HOH F 68 568 64 HOH HOH . 
F 5 HOH F 69 569 38 HOH HOH . 
F 5 HOH F 70 570 56 HOH HOH . 
F 5 HOH F 71 571 61 HOH HOH . 
F 5 HOH F 72 572 66 HOH HOH . 
F 5 HOH F 73 573 42 HOH HOH . 
F 5 HOH F 74 574 77 HOH HOH . 
F 5 HOH F 75 575 69 HOH HOH . 
F 5 HOH F 76 576 5 HOH HOH . 
F 5 HOH F 77 577 25 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 2 30.139 74.744 15.654 1 79.98 ? C1 GOL 402 F 1 
HETATM 2 O O1 GOL . . . C 2 31.296 75.29 16.281 1 78.76 ? O1 GOL 402 F 1 
HETATM 3 C C2 GOL . . . C 2 30.351 73.311 15.218 1 81 ? C2 GOL 402 F 1 
HETATM 4 O O2 GOL . . . C 2 30.353 72.447 16.366 1 80.52 ? O2 GOL 402 F 1 
HETATM 5 C C3 GOL . . . C 2 29.298 72.838 14.239 1 81.04 ? C3 GOL 402 F 1 
HETATM 6 O O3 GOL . . . C 2 29.34 73.514 12.981 1 79.06 ? O3 GOL 402 F 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           264 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#