data_5DJR # _model_server_result.job_id rGYYGI-0ru9vmD-KBYYUpQ _model_server_result.datetime_utc '2024-11-25 21:03:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5djr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 5DJR # _exptl.entry_id 5DJR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 276.289 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "1H,1'H-4,4'-biindole-2-carboxylic acid" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5DJR _cell.length_a 111.32 _cell.length_b 111.32 _cell.length_c 77.31 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DJR _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 111.32 111.32 38.655 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H12 N2 O2' _chem_comp.formula_weight 276.289 _chem_comp.id 5BK _chem_comp.mon_nstd_flag . _chem_comp.name "1H,1'H-4,4'-biindole-2-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O9 C8 5BK doub 1 n n C8 O10 5BK sing 2 n n C8 C6 5BK sing 3 n n C6 C7 5BK doub 4 n y C6 N5 5BK sing 5 n y C7 C3 5BK sing 6 n y N5 C4 5BK sing 7 n y C15 N14 5BK sing 8 n y C15 C13 5BK doub 9 n y N14 C21 5BK sing 10 n y C13 C16 5BK sing 11 n y C3 C4 5BK doub 12 n y C3 C12 5BK sing 13 n y C21 C16 5BK doub 14 n y C21 C20 5BK sing 15 n y C4 C2 5BK sing 16 n y C16 C17 5BK sing 17 n y C20 C19 5BK doub 18 n y C17 C12 5BK sing 19 n n C17 C18 5BK doub 20 n y C12 C11 5BK doub 21 n y C19 C18 5BK sing 22 n y C2 C1 5BK doub 23 n y C11 C1 5BK sing 24 n y C1 H1 5BK sing 25 n n C2 H2 5BK sing 26 n n C11 H3 5BK sing 27 n n C13 H4 5BK sing 28 n n C15 H5 5BK sing 29 n n C18 H6 5BK sing 30 n n C19 H7 5BK sing 31 n n C20 H8 5BK sing 32 n n N5 H9 5BK sing 33 n n C7 H10 5BK sing 34 n n O10 H11 5BK sing 35 n n N14 H12 5BK sing 36 n n # _atom_sites.entry_id 5DJR _atom_sites.fract_transf_matrix[1][1] 0.008983 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008983 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012935 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL F 1 401 1 GOL GOL . C 2 GOL F 1 402 2 GOL GOL . D 3 5BK F 1 403 1 5BK LI1 . E 4 PO4 F 1 404 1 PO4 PO4 . F 5 HOH F 1 501 14 HOH HOH . F 5 HOH F 2 502 52 HOH HOH . F 5 HOH F 3 503 18 HOH HOH . F 5 HOH F 4 504 50 HOH HOH . F 5 HOH F 5 505 20 HOH HOH . F 5 HOH F 6 506 10 HOH HOH . F 5 HOH F 7 507 21 HOH HOH . F 5 HOH F 8 508 45 HOH HOH . F 5 HOH F 9 509 54 HOH HOH . F 5 HOH F 10 510 35 HOH HOH . F 5 HOH F 11 511 11 HOH HOH . F 5 HOH F 12 512 55 HOH HOH . F 5 HOH F 13 513 1 HOH HOH . F 5 HOH F 14 514 8 HOH HOH . F 5 HOH F 15 515 71 HOH HOH . F 5 HOH F 16 516 43 HOH HOH . F 5 HOH F 17 517 12 HOH HOH . F 5 HOH F 18 518 72 HOH HOH . F 5 HOH F 19 519 4 HOH HOH . F 5 HOH F 20 520 63 HOH HOH . F 5 HOH F 21 521 32 HOH HOH . F 5 HOH F 22 522 19 HOH HOH . F 5 HOH F 23 523 39 HOH HOH . F 5 HOH F 24 524 34 HOH HOH . F 5 HOH F 25 525 67 HOH HOH . F 5 HOH F 26 526 60 HOH HOH . F 5 HOH F 27 527 68 HOH HOH . F 5 HOH F 28 528 44 HOH HOH . F 5 HOH F 29 529 2 HOH HOH . F 5 HOH F 30 530 51 HOH HOH . F 5 HOH F 31 531 28 HOH HOH . F 5 HOH F 32 532 59 HOH HOH . F 5 HOH F 33 533 9 HOH HOH . F 5 HOH F 34 534 40 HOH HOH . F 5 HOH F 35 535 70 HOH HOH . F 5 HOH F 36 536 15 HOH HOH . F 5 HOH F 37 537 58 HOH HOH . F 5 HOH F 38 538 49 HOH HOH . F 5 HOH F 39 539 3 HOH HOH . F 5 HOH F 40 540 57 HOH HOH . F 5 HOH F 41 541 37 HOH HOH . F 5 HOH F 42 542 13 HOH HOH . F 5 HOH F 43 543 53 HOH HOH . F 5 HOH F 44 544 33 HOH HOH . F 5 HOH F 45 545 30 HOH HOH . F 5 HOH F 46 546 74 HOH HOH . F 5 HOH F 47 547 31 HOH HOH . F 5 HOH F 48 548 48 HOH HOH . F 5 HOH F 49 549 36 HOH HOH . F 5 HOH F 50 550 16 HOH HOH . F 5 HOH F 51 551 24 HOH HOH . F 5 HOH F 52 552 26 HOH HOH . F 5 HOH F 53 553 6 HOH HOH . F 5 HOH F 54 554 29 HOH HOH . F 5 HOH F 55 555 65 HOH HOH . F 5 HOH F 56 556 76 HOH HOH . F 5 HOH F 57 557 23 HOH HOH . F 5 HOH F 58 558 73 HOH HOH . F 5 HOH F 59 559 46 HOH HOH . F 5 HOH F 60 560 75 HOH HOH . F 5 HOH F 61 561 22 HOH HOH . F 5 HOH F 62 562 47 HOH HOH . F 5 HOH F 63 563 41 HOH HOH . F 5 HOH F 64 564 62 HOH HOH . F 5 HOH F 65 565 7 HOH HOH . F 5 HOH F 66 566 27 HOH HOH . F 5 HOH F 67 567 17 HOH HOH . F 5 HOH F 68 568 64 HOH HOH . F 5 HOH F 69 569 38 HOH HOH . F 5 HOH F 70 570 56 HOH HOH . F 5 HOH F 71 571 61 HOH HOH . F 5 HOH F 72 572 66 HOH HOH . F 5 HOH F 73 573 42 HOH HOH . F 5 HOH F 74 574 77 HOH HOH . F 5 HOH F 75 575 69 HOH HOH . F 5 HOH F 76 576 5 HOH HOH . F 5 HOH F 77 577 25 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 5BK . A . D 3 2.736 72.861 29.526 0.5 145 ? C1 5BK 403 F 1 HETATM 2 C C1 5BK . B . D 3 2.569 72.786 29.966 0.5 41.56 ? C1 5BK 403 F 1 HETATM 3 C C2 5BK . A . D 3 3.717 72.123 28.832 0.5 145.44 ? C2 5BK 403 F 1 HETATM 4 C C2 5BK . B . D 3 3.665 72.152 29.352 0.5 43.43 ? C2 5BK 403 F 1 HETATM 5 C C3 5BK . A . D 3 4.611 74.236 28.016 0.5 145.75 ? C3 5BK 403 F 1 HETATM 6 C C3 5BK . B . D 3 4.164 74.276 28.249 0.5 45.71 ? C3 5BK 403 F 1 HETATM 7 C C11 5BK . A . D 3 2.704 74.273 29.466 0.5 144.74 ? C11 5BK 403 F 1 HETATM 8 C C11 5BK . B . D 3 2.276 74.142 29.712 0.5 41.75 ? C11 5BK 403 F 1 HETATM 9 C C12 5BK . A . D 3 3.648 74.995 28.704 0.5 144.7 ? C12 5BK 403 F 1 HETATM 10 C C12 5BK . B . D 3 3.068 74.926 28.847 0.5 42.36 ? C12 5BK 403 F 1 HETATM 11 C C13 5BK . A . D 3 1.099 76.792 27.8 0.5 142.67 ? C13 5BK 403 F 1 HETATM 12 C C13 5BK . B . D 3 5.198 77.452 28.932 0.5 36.16 ? C13 5BK 403 F 1 HETATM 13 C C15 5BK . A . D 3 0.466 77.935 27.497 0.5 142.64 ? C15 5BK 403 F 1 HETATM 14 C C15 5BK . B . D 3 5.548 78.74 28.816 0.5 38.31 ? C15 5BK 403 F 1 HETATM 15 C C16 5BK . A . D 3 2.504 77.179 28.187 0.5 142.72 ? C16 5BK 403 F 1 HETATM 16 C C16 5BK . B . D 3 3.726 77.38 28.618 0.5 38.42 ? C16 5BK 403 F 1 HETATM 17 C C17 5BK . A . D 3 3.648 76.48 28.596 0.5 143.41 ? C17 5BK 403 F 1 HETATM 18 C C17 5BK . B . D 3 2.754 76.354 28.564 0.5 40.16 ? C17 5BK 403 F 1 HETATM 19 C C18 5BK . A . D 3 4.795 77.26 28.868 0.5 142.57 ? C18 5BK 403 F 1 HETATM 20 C C18 5BK . B . D 3 1.465 76.746 28.164 0.5 37.71 ? C18 5BK 403 F 1 HETATM 21 C C19 5BK . A . D 3 4.792 78.662 28.706 0.5 142.01 ? C19 5BK 403 F 1 HETATM 22 C C19 5BK . B . D 3 1.167 78.09 27.869 0.5 37.4 ? C19 5BK 403 F 1 HETATM 23 C C20 5BK . A . D 3 3.626 79.343 28.31 0.5 141.8 ? C20 5BK 403 F 1 HETATM 24 C C20 5BK . B . D 3 2.137 79.101 27.963 0.5 37.48 ? C20 5BK 403 F 1 HETATM 25 C C21 5BK . A . D 3 2.494 78.56 28.049 0.5 142.15 ? C21 5BK 403 F 1 HETATM 26 C C21 5BK . B . D 3 3.419 78.703 28.334 0.5 37.57 ? C21 5BK 403 F 1 HETATM 27 C C4 5BK . A . D 3 4.654 72.848 28.078 0.5 145.95 ? C4 5BK 403 F 1 HETATM 28 C C4 5BK . B . D 3 4.458 72.934 28.497 0.5 45.64 ? C4 5BK 403 F 1 HETATM 29 N N5 5BK . A . D 3 5.686 72.405 27.329 0.5 146.55 ? N5 5BK 403 F 1 HETATM 30 N N5 5BK . B . D 3 5.546 72.582 27.788 0.5 46.49 ? N5 5BK 403 F 1 HETATM 31 C C6 5BK . A . D 3 6.331 73.397 26.763 0.5 146.7 ? C6 5BK 403 F 1 HETATM 32 C C6 5BK . B . D 3 6.032 73.598 27.105 0.5 47.83 ? C6 5BK 403 F 1 HETATM 33 C C7 5BK . A . D 3 5.77 74.566 27.11 0.5 146.3 ? C7 5BK 403 F 1 HETATM 34 C C7 5BK . B . D 3 5.243 74.678 27.271 0.5 46.94 ? C7 5BK 403 F 1 HETATM 35 C C8 5BK . A . D 3 7.525 73.24 25.912 0.5 146.92 ? C8 5BK 403 F 1 HETATM 36 C C8 5BK . B . D 3 7.224 73.511 26.232 0.5 46.88 ? C8 5BK 403 F 1 HETATM 37 O O9 5BK . A . D 3 7.528 72.356 24.91 0.5 146.84 ? O9 5BK 403 F 1 HETATM 38 O O9 5BK . B . D 3 7.742 72.314 25.944 0.5 47.92 ? O9 5BK 403 F 1 HETATM 39 O O10 5BK . A . D 3 8.502 73.936 26.149 0.5 147.09 ? O10 5BK 403 F 1 HETATM 40 O O10 5BK . B . D 3 7.718 74.532 25.772 0.5 46.45 ? O10 5BK 403 F 1 HETATM 41 N N14 5BK . A . D 3 1.278 78.951 27.637 0.5 142.39 ? N14 5BK 403 F 1 HETATM 42 N N14 5BK . B . D 3 4.515 79.458 28.46 0.5 38.58 ? N14 5BK 403 F 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 42 #