data_5DJU # _model_server_result.job_id UgRZnQImxnolRYGP-QaJeQ _model_server_result.datetime_utc '2024-11-01 10:39:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dju # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":601}' # _entry.id 5DJU # _exptl.entry_id 5DJU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation C450A _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5DJU _cell.length_a 74.24 _cell.length_b 74.5 _cell.length_c 81.91 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DJU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,L,M 1 1 C,D,I,J,K,N,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 I N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 5DJU _atom_sites.fract_transf_matrix[1][1] 0.01347 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013423 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012209 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 FMN A 1 601 1723 FMN FMN . F 4 CL A 1 602 1 CL CL . G 4 CL A 1 603 3 CL CL . H 4 CL A 1 604 5 CL CL . I 3 FMN C 1 601 1723 FMN FMN . J 4 CL C 1 602 2 CL CL . K 4 CL C 1 603 4 CL CL . L 5 HOH B 1 101 136 HOH HOH . L 5 HOH B 2 102 78 HOH HOH . L 5 HOH B 3 103 40 HOH HOH . L 5 HOH B 4 104 46 HOH HOH . L 5 HOH B 5 105 180 HOH HOH . L 5 HOH B 6 106 97 HOH HOH . L 5 HOH B 7 107 123 HOH HOH . L 5 HOH B 8 108 118 HOH HOH . L 5 HOH B 9 109 121 HOH HOH . L 5 HOH B 10 110 142 HOH HOH . L 5 HOH B 11 111 158 HOH HOH . L 5 HOH B 12 112 14 HOH HOH . L 5 HOH B 13 113 206 HOH HOH . L 5 HOH B 14 114 68 HOH HOH . L 5 HOH B 15 115 52 HOH HOH . L 5 HOH B 16 116 35 HOH HOH . L 5 HOH B 17 117 67 HOH HOH . L 5 HOH B 18 118 134 HOH HOH . L 5 HOH B 19 119 138 HOH HOH . L 5 HOH B 20 120 21 HOH HOH . L 5 HOH B 21 121 112 HOH HOH . L 5 HOH B 22 122 60 HOH HOH . L 5 HOH B 23 123 122 HOH HOH . L 5 HOH B 24 124 27 HOH HOH . L 5 HOH B 25 125 280 HOH HOH . L 5 HOH B 26 126 53 HOH HOH . L 5 HOH B 27 127 146 HOH HOH . L 5 HOH B 28 128 240 HOH HOH . L 5 HOH B 29 129 208 HOH HOH . L 5 HOH B 30 130 258 HOH HOH . L 5 HOH B 31 131 147 HOH HOH . L 5 HOH B 32 132 233 HOH HOH . L 5 HOH B 33 133 216 HOH HOH . L 5 HOH B 34 134 77 HOH HOH . L 5 HOH B 35 135 188 HOH HOH . L 5 HOH B 36 136 235 HOH HOH . L 5 HOH B 37 137 8 HOH HOH . L 5 HOH B 38 138 133 HOH HOH . L 5 HOH B 39 139 282 HOH HOH . L 5 HOH B 40 140 132 HOH HOH . L 5 HOH B 41 141 210 HOH HOH . M 5 HOH A 1 701 37 HOH HOH . M 5 HOH A 2 702 272 HOH HOH . M 5 HOH A 3 703 230 HOH HOH . M 5 HOH A 4 704 85 HOH HOH . M 5 HOH A 5 705 232 HOH HOH . M 5 HOH A 6 706 10 HOH HOH . M 5 HOH A 7 707 145 HOH HOH . M 5 HOH A 8 708 66 HOH HOH . M 5 HOH A 9 709 94 HOH HOH . M 5 HOH A 10 710 13 HOH HOH . M 5 HOH A 11 711 91 HOH HOH . M 5 HOH A 12 712 222 HOH HOH . M 5 HOH A 13 713 156 HOH HOH . M 5 HOH A 14 714 276 HOH HOH . M 5 HOH A 15 715 117 HOH HOH . M 5 HOH A 16 716 119 HOH HOH . M 5 HOH A 17 717 87 HOH HOH . M 5 HOH A 18 718 225 HOH HOH . M 5 HOH A 19 719 141 HOH HOH . M 5 HOH A 20 720 152 HOH HOH . M 5 HOH A 21 721 130 HOH HOH . M 5 HOH A 22 722 103 HOH HOH . M 5 HOH A 23 723 72 HOH HOH . M 5 HOH A 24 724 88 HOH HOH . M 5 HOH A 25 725 127 HOH HOH . M 5 HOH A 26 726 93 HOH HOH . M 5 HOH A 27 727 164 HOH HOH . M 5 HOH A 28 728 166 HOH HOH . M 5 HOH A 29 729 168 HOH HOH . M 5 HOH A 30 730 38 HOH HOH . M 5 HOH A 31 731 61 HOH HOH . M 5 HOH A 32 732 24 HOH HOH . M 5 HOH A 33 733 214 HOH HOH . M 5 HOH A 34 734 185 HOH HOH . M 5 HOH A 35 735 245 HOH HOH . M 5 HOH A 36 736 279 HOH HOH . M 5 HOH A 37 737 28 HOH HOH . M 5 HOH A 38 738 44 HOH HOH . M 5 HOH A 39 739 106 HOH HOH . M 5 HOH A 40 740 43 HOH HOH . M 5 HOH A 41 741 186 HOH HOH . M 5 HOH A 42 742 174 HOH HOH . M 5 HOH A 43 743 137 HOH HOH . M 5 HOH A 44 744 62 HOH HOH . M 5 HOH A 45 745 73 HOH HOH . M 5 HOH A 46 746 277 HOH HOH . M 5 HOH A 47 747 48 HOH HOH . M 5 HOH A 48 748 6 HOH HOH . M 5 HOH A 49 749 191 HOH HOH . M 5 HOH A 50 750 184 HOH HOH . M 5 HOH A 51 751 219 HOH HOH . M 5 HOH A 52 752 153 HOH HOH . M 5 HOH A 53 753 4 HOH HOH . M 5 HOH A 54 754 98 HOH HOH . M 5 HOH A 55 755 51 HOH HOH . M 5 HOH A 56 756 271 HOH HOH . M 5 HOH A 57 757 181 HOH HOH . M 5 HOH A 58 758 217 HOH HOH . M 5 HOH A 59 759 193 HOH HOH . M 5 HOH A 60 760 189 HOH HOH . M 5 HOH A 61 761 178 HOH HOH . M 5 HOH A 62 762 231 HOH HOH . M 5 HOH A 63 763 207 HOH HOH . M 5 HOH A 64 764 273 HOH HOH . M 5 HOH A 65 765 124 HOH HOH . M 5 HOH A 66 766 262 HOH HOH . M 5 HOH A 67 767 218 HOH HOH . N 5 HOH D 1 101 32 HOH HOH . N 5 HOH D 2 102 58 HOH HOH . N 5 HOH D 3 103 182 HOH HOH . N 5 HOH D 4 104 65 HOH HOH . N 5 HOH D 5 105 26 HOH HOH . N 5 HOH D 6 106 242 HOH HOH . N 5 HOH D 7 107 74 HOH HOH . N 5 HOH D 8 108 194 HOH HOH . N 5 HOH D 9 109 199 HOH HOH . N 5 HOH D 10 110 20 HOH HOH . N 5 HOH D 11 111 265 HOH HOH . N 5 HOH D 12 112 175 HOH HOH . N 5 HOH D 13 113 19 HOH HOH . N 5 HOH D 14 114 131 HOH HOH . N 5 HOH D 15 115 34 HOH HOH . N 5 HOH D 16 116 42 HOH HOH . N 5 HOH D 17 117 172 HOH HOH . N 5 HOH D 18 118 86 HOH HOH . N 5 HOH D 19 119 148 HOH HOH . N 5 HOH D 20 120 90 HOH HOH . N 5 HOH D 21 121 22 HOH HOH . N 5 HOH D 22 122 237 HOH HOH . N 5 HOH D 23 123 125 HOH HOH . N 5 HOH D 24 124 259 HOH HOH . N 5 HOH D 25 125 239 HOH HOH . N 5 HOH D 26 126 55 HOH HOH . N 5 HOH D 27 127 89 HOH HOH . N 5 HOH D 28 128 99 HOH HOH . N 5 HOH D 29 129 7 HOH HOH . N 5 HOH D 30 130 114 HOH HOH . N 5 HOH D 31 131 105 HOH HOH . N 5 HOH D 32 132 84 HOH HOH . N 5 HOH D 33 133 54 HOH HOH . N 5 HOH D 34 134 223 HOH HOH . N 5 HOH D 35 135 144 HOH HOH . N 5 HOH D 36 136 275 HOH HOH . N 5 HOH D 37 137 17 HOH HOH . N 5 HOH D 38 138 215 HOH HOH . N 5 HOH D 39 139 157 HOH HOH . N 5 HOH D 40 140 213 HOH HOH . N 5 HOH D 41 141 229 HOH HOH . N 5 HOH D 42 142 171 HOH HOH . O 5 HOH C 1 701 268 HOH HOH . O 5 HOH C 2 702 49 HOH HOH . O 5 HOH C 3 703 269 HOH HOH . O 5 HOH C 4 704 177 HOH HOH . O 5 HOH C 5 705 264 HOH HOH . O 5 HOH C 6 706 129 HOH HOH . O 5 HOH C 7 707 267 HOH HOH . O 5 HOH C 8 708 244 HOH HOH . O 5 HOH C 9 709 183 HOH HOH . O 5 HOH C 10 710 30 HOH HOH . O 5 HOH C 11 711 236 HOH HOH . O 5 HOH C 12 712 31 HOH HOH . O 5 HOH C 13 713 116 HOH HOH . O 5 HOH C 14 714 205 HOH HOH . O 5 HOH C 15 715 5 HOH HOH . O 5 HOH C 16 716 39 HOH HOH . O 5 HOH C 17 717 256 HOH HOH . O 5 HOH C 18 718 220 HOH HOH . O 5 HOH C 19 719 16 HOH HOH . O 5 HOH C 20 720 76 HOH HOH . O 5 HOH C 21 721 29 HOH HOH . O 5 HOH C 22 722 278 HOH HOH . O 5 HOH C 23 723 41 HOH HOH . O 5 HOH C 24 724 69 HOH HOH . O 5 HOH C 25 725 120 HOH HOH . O 5 HOH C 26 726 96 HOH HOH . O 5 HOH C 27 727 79 HOH HOH . O 5 HOH C 28 728 167 HOH HOH . O 5 HOH C 29 729 56 HOH HOH . O 5 HOH C 30 730 227 HOH HOH . O 5 HOH C 31 731 113 HOH HOH . O 5 HOH C 32 732 71 HOH HOH . O 5 HOH C 33 733 47 HOH HOH . O 5 HOH C 34 734 25 HOH HOH . O 5 HOH C 35 735 15 HOH HOH . O 5 HOH C 36 736 23 HOH HOH . O 5 HOH C 37 737 3 HOH HOH . O 5 HOH C 38 738 253 HOH HOH . O 5 HOH C 39 739 179 HOH HOH . O 5 HOH C 40 740 197 HOH HOH . O 5 HOH C 41 741 9 HOH HOH . O 5 HOH C 42 742 203 HOH HOH . O 5 HOH C 43 743 204 HOH HOH . O 5 HOH C 44 744 226 HOH HOH . O 5 HOH C 45 745 80 HOH HOH . O 5 HOH C 46 746 83 HOH HOH . O 5 HOH C 47 747 154 HOH HOH . O 5 HOH C 48 748 109 HOH HOH . O 5 HOH C 49 749 173 HOH HOH . O 5 HOH C 50 750 95 HOH HOH . O 5 HOH C 51 751 59 HOH HOH . O 5 HOH C 52 752 263 HOH HOH . O 5 HOH C 53 753 36 HOH HOH . O 5 HOH C 54 754 261 HOH HOH . O 5 HOH C 55 755 64 HOH HOH . O 5 HOH C 56 756 12 HOH HOH . O 5 HOH C 57 757 260 HOH HOH . O 5 HOH C 58 758 281 HOH HOH . O 5 HOH C 59 759 201 HOH HOH . O 5 HOH C 60 760 283 HOH HOH . O 5 HOH C 61 761 200 HOH HOH . O 5 HOH C 62 762 63 HOH HOH . O 5 HOH C 63 763 212 HOH HOH . O 5 HOH C 64 764 169 HOH HOH . O 5 HOH C 65 765 274 HOH HOH . O 5 HOH C 66 766 241 HOH HOH . O 5 HOH C 67 767 238 HOH HOH . O 5 HOH C 68 768 266 HOH HOH . O 5 HOH C 69 769 190 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . I 3 -20.068 -9.054 -11.647 1 43.66 ? N1 FMN 601 C 1 HETATM 2 C C2 FMN . . . I 3 -20.922 -7.978 -11.484 1 42.98 ? C2 FMN 601 C 1 HETATM 3 O O2 FMN . . . I 3 -20.741 -7.2 -10.554 1 43.38 ? O2 FMN 601 C 1 HETATM 4 N N3 FMN . . . I 3 -21.979 -7.778 -12.359 1 38.65 ? N3 FMN 601 C 1 HETATM 5 C C4 FMN . . . I 3 -22.179 -8.651 -13.411 1 32.04 ? C4 FMN 601 C 1 HETATM 6 O O4 FMN . . . I 3 -23.121 -8.473 -14.192 1 31.94 ? O4 FMN 601 C 1 HETATM 7 C C4A FMN . . . I 3 -21.311 -9.727 -13.583 1 30.54 ? C4A FMN 601 C 1 HETATM 8 N N5 FMN . . . I 3 -21.505 -10.595 -14.628 1 28.52 ? N5 FMN 601 C 1 HETATM 9 C C5A FMN . . . I 3 -20.659 -11.663 -14.794 1 32.12 ? C5A FMN 601 C 1 HETATM 10 C C6 FMN . . . I 3 -20.881 -12.525 -15.853 1 30.78 ? C6 FMN 601 C 1 HETATM 11 C C7 FMN . . . I 3 -20.048 -13.616 -16.058 1 33.35 ? C7 FMN 601 C 1 HETATM 12 C C7M FMN . . . I 3 -20.329 -14.526 -17.22 1 34.91 ? C7M FMN 601 C 1 HETATM 13 C C8 FMN . . . I 3 -18.979 -13.841 -15.187 1 28.19 ? C8 FMN 601 C 1 HETATM 14 C C8M FMN . . . I 3 -18.069 -15.021 -15.388 1 27.09 ? C8M FMN 601 C 1 HETATM 15 C C9 FMN . . . I 3 -18.758 -12.97 -14.119 1 23.91 ? C9 FMN 601 C 1 HETATM 16 C C9A FMN . . . I 3 -19.594 -11.876 -13.916 1 29.49 ? C9A FMN 601 C 1 HETATM 17 N N10 FMN . . . I 3 -19.392 -10.999 -12.864 1 30.93 ? N10 FMN 601 C 1 HETATM 18 C C10 FMN . . . I 3 -20.255 -9.937 -12.698 1 36.38 ? C10 FMN 601 C 1 HETATM 19 C C1' FMN . . . I 3 -18.273 -11.204 -11.867 1 32.46 ? C1' FMN 601 C 1 HETATM 20 C C2' FMN . . . I 3 -16.872 -10.736 -12.275 1 28.75 ? C2' FMN 601 C 1 HETATM 21 O O2' FMN . . . I 3 -16.593 -11.037 -13.63 1 25.64 ? O2' FMN 601 C 1 HETATM 22 C C3' FMN . . . I 3 -15.876 -11.452 -11.363 1 22.83 ? C3' FMN 601 C 1 HETATM 23 O O3' FMN . . . I 3 -16.022 -12.85 -11.53 1 25.18 ? O3' FMN 601 C 1 HETATM 24 C C4' FMN . . . I 3 -16.099 -11.059 -9.896 1 27.48 ? C4' FMN 601 C 1 HETATM 25 O O4' FMN . . . I 3 -15.973 -9.656 -9.728 1 26.04 ? O4' FMN 601 C 1 HETATM 26 C C5' FMN . . . I 3 -15.155 -11.775 -8.933 1 29.34 ? C5' FMN 601 C 1 HETATM 27 O O5' FMN . . . I 3 -13.84 -11.597 -9.408 1 30.84 ? O5' FMN 601 C 1 HETATM 28 P P FMN . . . I 3 -12.878 -10.489 -8.745 1 32.12 ? P FMN 601 C 1 HETATM 29 O O1P FMN . . . I 3 -11.434 -10.868 -9.053 1 26.68 ? O1P FMN 601 C 1 HETATM 30 O O2P FMN . . . I 3 -13.065 -10.485 -7.242 1 32.85 -1 O2P FMN 601 C 1 HETATM 31 O O3P FMN . . . I 3 -13.187 -9.127 -9.321 1 24.41 ? O3P FMN 601 C 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #