data_5DJV # _model_server_result.job_id Id5E5K7sZH465YcMYbjRuw _model_server_result.datetime_utc '2025-01-10 17:43:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5djv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5DJV # _exptl.entry_id 5DJV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 364.396 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '8-(naphthalen-1-yl)-6-(1H-pyrrol-2-yl)quinoline-2-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5DJV _cell.length_a 111.88 _cell.length_b 111.88 _cell.length_c 74.02 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DJV _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 111.88 111.88 37.01 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H16 N2 O2' _chem_comp.formula_weight 364.396 _chem_comp.id 5BL _chem_comp.mon_nstd_flag . _chem_comp.name '8-(naphthalen-1-yl)-6-(1H-pyrrol-2-yl)quinoline-2-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O27 C26 5BL doub 1 n n O28 C26 5BL sing 2 n n C26 C24 5BL sing 3 n n C24 C23 5BL doub 4 n y C24 N25 5BL sing 5 n y C23 C22 5BL sing 6 n y N25 C20 5BL doub 7 n y C22 C21 5BL doub 8 n y C20 C21 5BL sing 9 n y C20 C6 5BL sing 10 n y C12 C13 5BL doub 11 n y C12 C11 5BL sing 12 n y C21 C9 5BL sing 13 n y C13 C15 5BL sing 14 n y C11 C10 5BL doub 15 n y C10 C14 5BL sing 16 n y C10 C6 5BL sing 17 n n C15 C14 5BL doub 18 n y C15 C16 5BL sing 19 n y C14 C19 5BL sing 20 n y C6 C7 5BL doub 21 n y C16 C17 5BL doub 22 n y C19 C18 5BL doub 23 n y C17 C18 5BL sing 24 n y C9 C8 5BL doub 25 n y C7 C8 5BL sing 26 n y C8 C3 5BL sing 27 n n C3 N4 5BL sing 28 n y C3 C2 5BL doub 29 n y N4 C5 5BL sing 30 n y C2 C1 5BL sing 31 n y C5 C1 5BL doub 32 n y C1 H1 5BL sing 33 n n C2 H2 5BL sing 34 n n C11 H3 5BL sing 35 n n C12 H4 5BL sing 36 n n C13 H5 5BL sing 37 n n C16 H6 5BL sing 38 n n C17 H7 5BL sing 39 n n C18 H8 5BL sing 40 n n C19 H9 5BL sing 41 n n C22 H10 5BL sing 42 n n C23 H11 5BL sing 43 n n N4 H12 5BL sing 44 n n C5 H13 5BL sing 45 n n C7 H14 5BL sing 46 n n C9 H15 5BL sing 47 n n O28 H16 5BL sing 48 n n # _atom_sites.entry_id 5DJV _atom_sites.fract_transf_matrix[1][1] 0.008938 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008938 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01351 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5BL F 1 401 1 5BL LI1 . C 3 HOH F 1 501 18 HOH HOH . C 3 HOH F 2 502 25 HOH HOH . C 3 HOH F 3 503 10 HOH HOH . C 3 HOH F 4 504 16 HOH HOH . C 3 HOH F 5 505 13 HOH HOH . C 3 HOH F 6 506 27 HOH HOH . C 3 HOH F 7 507 2 HOH HOH . C 3 HOH F 8 508 14 HOH HOH . C 3 HOH F 9 509 7 HOH HOH . C 3 HOH F 10 510 1 HOH HOH . C 3 HOH F 11 511 19 HOH HOH . C 3 HOH F 12 512 22 HOH HOH . C 3 HOH F 13 513 24 HOH HOH . C 3 HOH F 14 514 21 HOH HOH . C 3 HOH F 15 515 26 HOH HOH . C 3 HOH F 16 516 5 HOH HOH . C 3 HOH F 17 517 17 HOH HOH . C 3 HOH F 18 518 8 HOH HOH . C 3 HOH F 19 519 4 HOH HOH . C 3 HOH F 20 520 12 HOH HOH . C 3 HOH F 21 521 20 HOH HOH . C 3 HOH F 22 522 6 HOH HOH . C 3 HOH F 23 523 9 HOH HOH . C 3 HOH F 24 524 15 HOH HOH . C 3 HOH F 25 525 23 HOH HOH . C 3 HOH F 26 526 3 HOH HOH . C 3 HOH F 27 527 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 5BL . . . B 2 3.38 69.977 30.949 1 92.41 ? C1 5BL 401 F 1 HETATM 2 C C2 5BL . . . B 2 4.225 70.592 29.923 1 92.38 ? C2 5BL 401 F 1 HETATM 3 C C3 5BL . . . B 2 3.405 71.349 29.186 1 91.4 ? C3 5BL 401 F 1 HETATM 4 C C11 5BL . . . B 2 1.236 75.262 26.091 1 86.62 ? C11 5BL 401 F 1 HETATM 5 C C12 5BL . . . B 2 0.393 76.371 25.906 1 86.15 ? C12 5BL 401 F 1 HETATM 6 C C13 5BL . . . B 2 0.923 77.664 26.067 1 85.72 ? C13 5BL 401 F 1 HETATM 7 C C14 5BL . . . B 2 3.148 76.74 26.562 1 85.07 ? C14 5BL 401 F 1 HETATM 8 C C15 5BL . . . B 2 2.282 77.862 26.402 1 85.14 ? C15 5BL 401 F 1 HETATM 9 C C16 5BL . . . B 2 2.784 79.172 26.56 1 83.24 ? C16 5BL 401 F 1 HETATM 10 C C17 5BL . . . B 2 4.13 79.381 26.921 1 81.89 ? C17 5BL 401 F 1 HETATM 11 C C18 5BL . . . B 2 4.992 78.285 27.087 1 80.95 ? C18 5BL 401 F 1 HETATM 12 C C19 5BL . . . B 2 4.502 76.98 26.918 1 82.21 ? C19 5BL 401 F 1 HETATM 13 C C20 5BL . . . B 2 4.473 73.821 25.74 1 87.59 ? C20 5BL 401 F 1 HETATM 14 C C21 5BL . . . B 2 5.211 72.641 26.03 1 88.78 ? C21 5BL 401 F 1 HETATM 15 C C22 5BL . . . B 2 6.286 72.299 25.191 1 88.65 ? C22 5BL 401 F 1 HETATM 16 C C23 5BL . . . B 2 6.595 73.117 24.088 1 88.59 ? C23 5BL 401 F 1 HETATM 17 C C24 5BL . . . B 2 5.851 74.291 23.847 1 86.74 ? C24 5BL 401 F 1 HETATM 18 C C26 5BL . . . B 2 6.178 75.197 22.674 1 87.84 ? C26 5BL 401 F 1 HETATM 19 N N4 5BL . . . B 2 2.212 71.234 29.698 1 91.18 ? N4 5BL 401 F 1 HETATM 20 C C5 5BL . . . B 2 2.152 70.451 30.732 1 91.85 ? C5 5BL 401 F 1 HETATM 21 C C6 5BL . . . B 2 3.401 74.186 26.594 1 88.63 ? C6 5BL 401 F 1 HETATM 22 C C7 5BL . . . B 2 3.103 73.39 27.718 1 89.75 ? C7 5BL 401 F 1 HETATM 23 C C8 5BL . . . B 2 3.805 72.203 27.991 1 90.5 ? C8 5BL 401 F 1 HETATM 24 C C9 5BL . . . B 2 4.87 71.841 27.141 1 89.15 ? C9 5BL 401 F 1 HETATM 25 C C10 5BL . . . B 2 2.606 75.434 26.394 1 87.02 ? C10 5BL 401 F 1 HETATM 26 N N25 5BL . . . B 2 4.821 74.603 24.673 1 84.79 ? N25 5BL 401 F 1 HETATM 27 O O27 5BL . . . B 2 5.176 75.837 22.067 1 85.15 ? O27 5BL 401 F 1 HETATM 28 O O28 5BL . . . B 2 7.334 75.323 22.273 1 90.6 ? O28 5BL 401 F 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #