data_5DK8 # _model_server_result.job_id yNH9UOIjmqoJaDrPjcbFVw _model_server_result.datetime_utc '2024-12-26 12:10:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dk8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":101}' # _entry.id 5DK8 # _exptl.entry_id 5DK8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 88.52 _cell.angle_beta 79.12 _cell.angle_gamma 67.37 _cell.entry_id 5DK8 _cell.length_a 29.961 _cell.length_b 30.182 _cell.length_c 41.414 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DK8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C MG MG . A MG 101 1_555 D O HOH . A HOH 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc2 C MG MG . A MG 101 1_555 D O HOH . A HOH 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc3 C MG MG . A MG 101 1_555 D O HOH . A HOH 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc4 C MG MG . A MG 101 1_555 D O HOH . A HOH 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc5 C MG MG . A MG 101 1_555 E O HOH . B HOH 120 1_556 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? metalc ? metalc6 C MG MG . A MG 101 1_555 E O HOH . B HOH 136 1_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5DK8 _atom_sites.fract_transf_matrix[1][1] 0.033377 _atom_sites.fract_transf_matrix[1][2] -0.013914 _atom_sites.fract_transf_matrix[1][3] -0.007148 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.035896 _atom_sites.fract_transf_matrix[2][3] 0.001859 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024622 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 101 1 MG MG . D 3 HOH A 1 201 142 HOH HOH . D 3 HOH A 2 202 39 HOH HOH . D 3 HOH A 3 203 84 HOH HOH . D 3 HOH A 4 204 16 HOH HOH . D 3 HOH A 5 205 66 HOH HOH . D 3 HOH A 6 206 20 HOH HOH . D 3 HOH A 7 207 167 HOH HOH . D 3 HOH A 8 208 143 HOH HOH . D 3 HOH A 9 209 34 HOH HOH . D 3 HOH A 10 210 115 HOH HOH . D 3 HOH A 11 211 19 HOH HOH . D 3 HOH A 12 212 104 HOH HOH . D 3 HOH A 13 213 14 HOH HOH . D 3 HOH A 14 214 27 HOH HOH . D 3 HOH A 15 215 76 HOH HOH . D 3 HOH A 16 216 17 HOH HOH . D 3 HOH A 17 217 125 HOH HOH . D 3 HOH A 18 218 40 HOH HOH . D 3 HOH A 19 219 100 HOH HOH . D 3 HOH A 20 220 64 HOH HOH . D 3 HOH A 21 221 22 HOH HOH . D 3 HOH A 22 222 88 HOH HOH . D 3 HOH A 23 223 45 HOH HOH . D 3 HOH A 24 224 83 HOH HOH . D 3 HOH A 25 225 5 HOH HOH . D 3 HOH A 26 226 128 HOH HOH . D 3 HOH A 27 227 31 HOH HOH . D 3 HOH A 28 228 8 HOH HOH . D 3 HOH A 29 229 18 HOH HOH . D 3 HOH A 30 230 78 HOH HOH . D 3 HOH A 31 231 30 HOH HOH . D 3 HOH A 32 232 62 HOH HOH . D 3 HOH A 33 233 86 HOH HOH . D 3 HOH A 34 234 48 HOH HOH . D 3 HOH A 35 235 56 HOH HOH . D 3 HOH A 36 236 87 HOH HOH . D 3 HOH A 37 237 41 HOH HOH . D 3 HOH A 38 238 71 HOH HOH . D 3 HOH A 39 239 98 HOH HOH . D 3 HOH A 40 240 21 HOH HOH . D 3 HOH A 41 241 79 HOH HOH . D 3 HOH A 42 242 3 HOH HOH . D 3 HOH A 43 243 35 HOH HOH . D 3 HOH A 44 244 141 HOH HOH . D 3 HOH A 45 245 109 HOH HOH . D 3 HOH A 46 246 129 HOH HOH . D 3 HOH A 47 247 1 HOH HOH . D 3 HOH A 48 248 68 HOH HOH . D 3 HOH A 49 249 114 HOH HOH . D 3 HOH A 50 250 33 HOH HOH . D 3 HOH A 51 251 111 HOH HOH . D 3 HOH A 52 252 49 HOH HOH . D 3 HOH A 53 253 65 HOH HOH . D 3 HOH A 54 254 131 HOH HOH . D 3 HOH A 55 255 69 HOH HOH . D 3 HOH A 56 256 166 HOH HOH . D 3 HOH A 57 257 94 HOH HOH . D 3 HOH A 58 258 89 HOH HOH . D 3 HOH A 59 259 36 HOH HOH . D 3 HOH A 60 260 126 HOH HOH . D 3 HOH A 61 261 53 HOH HOH . D 3 HOH A 62 262 117 HOH HOH . D 3 HOH A 63 263 145 HOH HOH . D 3 HOH A 64 264 77 HOH HOH . D 3 HOH A 65 265 136 HOH HOH . D 3 HOH A 66 266 103 HOH HOH . D 3 HOH A 67 267 107 HOH HOH . D 3 HOH A 68 268 120 HOH HOH . D 3 HOH A 69 269 61 HOH HOH . D 3 HOH A 70 270 134 HOH HOH . D 3 HOH A 71 271 138 HOH HOH . E 3 HOH B 1 101 118 HOH HOH . E 3 HOH B 2 102 75 HOH HOH . E 3 HOH B 3 103 105 HOH HOH . E 3 HOH B 4 104 42 HOH HOH . E 3 HOH B 5 105 133 HOH HOH . E 3 HOH B 6 106 139 HOH HOH . E 3 HOH B 7 107 60 HOH HOH . E 3 HOH B 8 108 91 HOH HOH . E 3 HOH B 9 109 102 HOH HOH . E 3 HOH B 10 110 50 HOH HOH . E 3 HOH B 11 111 4 HOH HOH . E 3 HOH B 12 112 146 HOH HOH . E 3 HOH B 13 113 9 HOH HOH . E 3 HOH B 14 114 24 HOH HOH . E 3 HOH B 15 115 70 HOH HOH . E 3 HOH B 16 116 74 HOH HOH . E 3 HOH B 17 117 51 HOH HOH . E 3 HOH B 18 118 73 HOH HOH . E 3 HOH B 19 119 44 HOH HOH . E 3 HOH B 20 120 23 HOH HOH . E 3 HOH B 21 121 11 HOH HOH . E 3 HOH B 22 122 25 HOH HOH . E 3 HOH B 23 123 15 HOH HOH . E 3 HOH B 24 124 55 HOH HOH . E 3 HOH B 25 125 10 HOH HOH . E 3 HOH B 26 126 6 HOH HOH . E 3 HOH B 27 127 162 HOH HOH . E 3 HOH B 28 128 95 HOH HOH . E 3 HOH B 29 129 28 HOH HOH . E 3 HOH B 30 130 26 HOH HOH . E 3 HOH B 31 131 32 HOH HOH . E 3 HOH B 32 132 12 HOH HOH . E 3 HOH B 33 133 47 HOH HOH . E 3 HOH B 34 134 29 HOH HOH . E 3 HOH B 35 135 7 HOH HOH . E 3 HOH B 36 136 13 HOH HOH . E 3 HOH B 37 137 72 HOH HOH . E 3 HOH B 38 138 92 HOH HOH . E 3 HOH B 39 139 67 HOH HOH . E 3 HOH B 40 140 46 HOH HOH . E 3 HOH B 41 141 85 HOH HOH . E 3 HOH B 42 142 110 HOH HOH . E 3 HOH B 43 143 154 HOH HOH . E 3 HOH B 44 144 57 HOH HOH . E 3 HOH B 45 145 54 HOH HOH . E 3 HOH B 46 146 37 HOH HOH . E 3 HOH B 47 147 82 HOH HOH . E 3 HOH B 48 148 127 HOH HOH . E 3 HOH B 49 149 135 HOH HOH . E 3 HOH B 50 150 155 HOH HOH . E 3 HOH B 51 151 150 HOH HOH . E 3 HOH B 52 152 58 HOH HOH . E 3 HOH B 53 153 63 HOH HOH . E 3 HOH B 54 154 132 HOH HOH . E 3 HOH B 55 155 122 HOH HOH . E 3 HOH B 56 156 97 HOH HOH . E 3 HOH B 57 157 113 HOH HOH . E 3 HOH B 58 158 80 HOH HOH . E 3 HOH B 59 159 96 HOH HOH . E 3 HOH B 60 160 168 HOH HOH . E 3 HOH B 61 161 93 HOH HOH . E 3 HOH B 62 162 124 HOH HOH . E 3 HOH B 63 163 52 HOH HOH . E 3 HOH B 64 164 43 HOH HOH . E 3 HOH B 65 165 99 HOH HOH . E 3 HOH B 66 166 81 HOH HOH . E 3 HOH B 67 167 108 HOH HOH . E 3 HOH B 68 168 106 HOH HOH . E 3 HOH B 69 169 158 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x -12.696 _atom_site.Cartn_y 13.423 _atom_site.Cartn_z -2.748 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 15.01 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 101 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #