data_5DK9 # _model_server_result.job_id v3Fc_UM_A74ARjPonix09Q _model_server_result.datetime_utc '2024-10-12 16:31:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dk9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":601}' # _entry.id 5DK9 # _exptl.entry_id 5DK9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 407.504 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "4,4'-{2-[3-(phenylamino)phenyl]but-1-ene-1,1-diyl}diphenol" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.07 _cell.angle_gamma 90 _cell.entry_id 5DK9 _cell.length_a 54.49 _cell.length_b 81.92 _cell.length_c 58.28 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DK9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C28 H25 N O2' _chem_comp.formula_weight 407.504 _chem_comp.id 5CC _chem_comp.mon_nstd_flag . _chem_comp.name "4,4'-{2-[3-(phenylamino)phenyl]but-1-ene-1,1-diyl}diphenol" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O29 C28 5CC sing 1 n n C28 C27 5CC doub 2 n y C28 C30 5CC sing 3 n y C27 C26 5CC sing 4 n y C30 C31 5CC doub 5 n y C26 C25 5CC doub 6 n y C31 C25 5CC sing 7 n y C25 C17 5CC sing 8 n n C19 C20 5CC doub 9 n y C19 C18 5CC sing 10 n y C20 C21 5CC sing 11 n y C17 C18 5CC sing 12 n n C17 C03 5CC doub 13 n n C18 C24 5CC doub 14 n y C21 O22 5CC sing 15 n n C21 C23 5CC doub 16 n y C24 C23 5CC sing 17 n y C01 C02 5CC sing 18 n n C03 C02 5CC sing 19 n n C03 C04 5CC sing 20 n n C04 C16 5CC doub 21 n y C04 C05 5CC sing 22 n y C16 C08 5CC sing 23 n y C05 C06 5CC doub 24 n y C08 N09 5CC sing 25 n n C08 C07 5CC doub 26 n y N09 C10 5CC sing 27 n n C06 C07 5CC sing 28 n y C10 C15 5CC doub 29 n y C10 C11 5CC sing 30 n y C15 C14 5CC sing 31 n y C11 C12 5CC doub 32 n y C14 C13 5CC doub 33 n y C12 C13 5CC sing 34 n y C01 H1 5CC sing 35 n n C01 H2 5CC sing 36 n n C01 H3 5CC sing 37 n n C02 H4 5CC sing 38 n n C02 H5 5CC sing 39 n n C05 H7 5CC sing 40 n n C06 H8 5CC sing 41 n n C07 H9 5CC sing 42 n n N09 H10 5CC sing 43 n n C11 H11 5CC sing 44 n n C12 H12 5CC sing 45 n n C13 H13 5CC sing 46 n n C14 H14 5CC sing 47 n n C15 H15 5CC sing 48 n n C16 H16 5CC sing 49 n n C19 H18 5CC sing 50 n n C20 H19 5CC sing 51 n n O22 H20 5CC sing 52 n n C23 H21 5CC sing 53 n n C24 H22 5CC sing 54 n n C26 H23 5CC sing 55 n n C27 H24 5CC sing 56 n n O29 H25 5CC sing 57 n n C30 H26 5CC sing 58 n n C31 H27 5CC sing 59 n n # _atom_sites.entry_id 5DK9 _atom_sites.fract_transf_matrix[1][1] 0.018352 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00707 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012207 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018388 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 5CC A 1 601 1 5CC UNK . F 3 5CC B 1 601 2 5CC UNK . G 4 HOH A 1 701 14 HOH HOH . G 4 HOH A 2 702 103 HOH HOH . G 4 HOH A 3 703 75 HOH HOH . G 4 HOH A 4 704 79 HOH HOH . G 4 HOH A 5 705 81 HOH HOH . G 4 HOH A 6 706 37 HOH HOH . G 4 HOH A 7 707 69 HOH HOH . G 4 HOH A 8 708 98 HOH HOH . G 4 HOH A 9 709 17 HOH HOH . G 4 HOH A 10 710 36 HOH HOH . G 4 HOH A 11 711 109 HOH HOH . G 4 HOH A 12 712 35 HOH HOH . G 4 HOH A 13 713 121 HOH HOH . G 4 HOH A 14 714 21 HOH HOH . G 4 HOH A 15 715 13 HOH HOH . G 4 HOH A 16 716 32 HOH HOH . G 4 HOH A 17 717 48 HOH HOH . G 4 HOH A 18 718 62 HOH HOH . G 4 HOH A 19 719 10 HOH HOH . G 4 HOH A 20 720 59 HOH HOH . G 4 HOH A 21 721 8 HOH HOH . G 4 HOH A 22 722 77 HOH HOH . G 4 HOH A 23 723 97 HOH HOH . G 4 HOH A 24 724 29 HOH HOH . G 4 HOH A 25 725 16 HOH HOH . G 4 HOH A 26 726 5 HOH HOH . G 4 HOH A 27 727 24 HOH HOH . G 4 HOH A 28 728 112 HOH HOH . G 4 HOH A 29 729 71 HOH HOH . G 4 HOH A 30 730 113 HOH HOH . G 4 HOH A 31 731 123 HOH HOH . G 4 HOH A 32 732 2 HOH HOH . G 4 HOH A 33 733 7 HOH HOH . G 4 HOH A 34 734 27 HOH HOH . G 4 HOH A 35 735 45 HOH HOH . G 4 HOH A 36 736 19 HOH HOH . G 4 HOH A 37 737 107 HOH HOH . G 4 HOH A 38 738 93 HOH HOH . G 4 HOH A 39 739 92 HOH HOH . G 4 HOH A 40 740 26 HOH HOH . G 4 HOH A 41 741 34 HOH HOH . G 4 HOH A 42 742 90 HOH HOH . G 4 HOH A 43 743 23 HOH HOH . G 4 HOH A 44 744 116 HOH HOH . G 4 HOH A 45 745 91 HOH HOH . G 4 HOH A 46 746 31 HOH HOH . G 4 HOH A 47 747 33 HOH HOH . G 4 HOH A 48 748 68 HOH HOH . G 4 HOH A 49 749 57 HOH HOH . G 4 HOH A 50 750 74 HOH HOH . G 4 HOH A 51 751 76 HOH HOH . G 4 HOH A 52 752 39 HOH HOH . G 4 HOH A 53 753 41 HOH HOH . G 4 HOH A 54 754 111 HOH HOH . G 4 HOH A 55 755 52 HOH HOH . G 4 HOH A 56 756 120 HOH HOH . G 4 HOH A 57 757 58 HOH HOH . G 4 HOH A 58 758 117 HOH HOH . G 4 HOH A 59 759 60 HOH HOH . G 4 HOH A 60 760 89 HOH HOH . G 4 HOH A 61 761 85 HOH HOH . G 4 HOH A 62 762 66 HOH HOH . G 4 HOH A 63 763 124 HOH HOH . G 4 HOH A 64 764 56 HOH HOH . G 4 HOH A 65 765 46 HOH HOH . G 4 HOH A 66 766 84 HOH HOH . G 4 HOH A 67 767 25 HOH HOH . H 4 HOH B 1 701 95 HOH HOH . H 4 HOH B 2 702 115 HOH HOH . H 4 HOH B 3 703 78 HOH HOH . H 4 HOH B 4 704 104 HOH HOH . H 4 HOH B 5 705 54 HOH HOH . H 4 HOH B 6 706 51 HOH HOH . H 4 HOH B 7 707 11 HOH HOH . H 4 HOH B 8 708 119 HOH HOH . H 4 HOH B 9 709 73 HOH HOH . H 4 HOH B 10 710 70 HOH HOH . H 4 HOH B 11 711 18 HOH HOH . H 4 HOH B 12 712 63 HOH HOH . H 4 HOH B 13 713 15 HOH HOH . H 4 HOH B 14 714 105 HOH HOH . H 4 HOH B 15 715 101 HOH HOH . H 4 HOH B 16 716 102 HOH HOH . H 4 HOH B 17 717 42 HOH HOH . H 4 HOH B 18 718 108 HOH HOH . H 4 HOH B 19 719 22 HOH HOH . H 4 HOH B 20 720 64 HOH HOH . H 4 HOH B 21 721 47 HOH HOH . H 4 HOH B 22 722 96 HOH HOH . H 4 HOH B 23 723 61 HOH HOH . H 4 HOH B 24 724 100 HOH HOH . H 4 HOH B 25 725 6 HOH HOH . H 4 HOH B 26 726 94 HOH HOH . H 4 HOH B 27 727 72 HOH HOH . H 4 HOH B 28 728 40 HOH HOH . H 4 HOH B 29 729 9 HOH HOH . H 4 HOH B 30 730 20 HOH HOH . H 4 HOH B 31 731 88 HOH HOH . H 4 HOH B 32 732 3 HOH HOH . H 4 HOH B 33 733 30 HOH HOH . H 4 HOH B 34 734 12 HOH HOH . H 4 HOH B 35 735 114 HOH HOH . H 4 HOH B 36 736 67 HOH HOH . H 4 HOH B 37 737 4 HOH HOH . H 4 HOH B 38 738 50 HOH HOH . H 4 HOH B 39 739 1 HOH HOH . H 4 HOH B 40 740 82 HOH HOH . H 4 HOH B 41 741 28 HOH HOH . H 4 HOH B 42 742 106 HOH HOH . H 4 HOH B 43 743 43 HOH HOH . H 4 HOH B 44 744 87 HOH HOH . H 4 HOH B 45 745 38 HOH HOH . H 4 HOH B 46 746 53 HOH HOH . H 4 HOH B 47 747 65 HOH HOH . H 4 HOH B 48 748 83 HOH HOH . H 4 HOH B 49 749 125 HOH HOH . H 4 HOH B 50 750 110 HOH HOH . H 4 HOH B 51 751 80 HOH HOH . H 4 HOH B 52 752 44 HOH HOH . H 4 HOH B 53 753 118 HOH HOH . H 4 HOH B 54 754 86 HOH HOH . H 4 HOH B 55 755 49 HOH HOH . I 4 HOH C 1 701 122 HOH HOH . I 4 HOH C 2 702 55 HOH HOH . J 4 HOH D 1 701 99 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 5CC . . . F 3 11.847 9.181 31.562 1 44.12 ? C01 5CC 601 B 1 HETATM 2 C C02 5CC . . . F 3 11.309 7.862 31.22 1 41.75 ? C02 5CC 601 B 1 HETATM 3 C C03 5CC . . . F 3 11.823 6.933 32.237 1 39.16 ? C03 5CC 601 B 1 HETATM 4 C C04 5CC . . . F 3 13.023 6.452 31.48 1 42.29 ? C04 5CC 601 B 1 HETATM 5 C C05 5CC . . . F 3 12.915 5.349 30.659 1 46.24 ? C05 5CC 601 B 1 HETATM 6 C C06 5CC . . . F 3 13.999 4.872 29.962 1 50.18 ? C06 5CC 601 B 1 HETATM 7 C C07 5CC . . . F 3 15.217 5.511 30.084 1 52.45 ? C07 5CC 601 B 1 HETATM 8 C C08 5CC . . . F 3 15.353 6.602 30.904 1 54.5 ? C08 5CC 601 B 1 HETATM 9 N N09 5CC . . . F 3 16.605 7.277 31.035 1 62.72 ? N09 5CC 601 B 1 HETATM 10 C C10 5CC . . . F 3 17.906 6.67 30.835 1 71.24 ? C10 5CC 601 B 1 HETATM 11 C C11 5CC . . . F 3 18.801 7.211 29.927 1 73.53 ? C11 5CC 601 B 1 HETATM 12 C C12 5CC . . . F 3 20.058 6.649 29.744 1 72.32 ? C12 5CC 601 B 1 HETATM 13 C C13 5CC . . . F 3 20.444 5.543 30.458 1 70.44 ? C13 5CC 601 B 1 HETATM 14 C C14 5CC . . . F 3 19.577 5.009 31.368 1 70.69 ? C14 5CC 601 B 1 HETATM 15 C C15 5CC . . . F 3 18.327 5.562 31.558 1 72.22 ? C15 5CC 601 B 1 HETATM 16 C C16 5CC . . . F 3 14.253 7.067 31.594 1 49.31 ? C16 5CC 601 B 1 HETATM 17 C C17 5CC . . . F 3 10.933 5.947 32.616 1 32.96 ? C17 5CC 601 B 1 HETATM 18 C C18 5CC . . . F 3 11.478 4.713 33.225 1 29.86 ? C18 5CC 601 B 1 HETATM 19 C C19 5CC . . . F 3 12.615 4.774 33.989 1 27.23 ? C19 5CC 601 B 1 HETATM 20 C C20 5CC . . . F 3 13.134 3.634 34.507 1 28.97 ? C20 5CC 601 B 1 HETATM 21 C C21 5CC . . . F 3 12.524 2.444 34.236 1 34.34 ? C21 5CC 601 B 1 HETATM 22 O O22 5CC . . . F 3 13.031 1.308 34.735 1 36.98 ? O22 5CC 601 B 1 HETATM 23 C C23 5CC . . . F 3 11.411 2.372 33.453 1 31.4 ? C23 5CC 601 B 1 HETATM 24 C C24 5CC . . . F 3 10.91 3.511 32.951 1 29.85 ? C24 5CC 601 B 1 HETATM 25 C C25 5CC . . . F 3 9.555 6.164 33.121 1 27.83 ? C25 5CC 601 B 1 HETATM 26 C C26 5CC . . . F 3 9.284 5.964 34.462 1 26.11 ? C26 5CC 601 B 1 HETATM 27 C C27 5CC . . . F 3 8.026 6.158 34.936 1 22.46 ? C27 5CC 601 B 1 HETATM 28 C C28 5CC . . . F 3 7.049 6.547 34.085 1 20.68 ? C28 5CC 601 B 1 HETATM 29 O O29 5CC . . . F 3 5.837 6.714 34.559 1 26.16 ? O29 5CC 601 B 1 HETATM 30 C C30 5CC . . . F 3 7.292 6.734 32.759 1 20.39 ? C30 5CC 601 B 1 HETATM 31 C C31 5CC . . . F 3 8.552 6.549 32.273 1 24 ? C31 5CC 601 B 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #