data_5DKA
#
_model_server_result.job_id            HO5lp-N7Hu-3yhO4lF7Msg 
_model_server_result.datetime_utc      '2024-11-22 17:11:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5dka 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    5DKA 
#
_exptl.entry_id    5DKA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5DKA 
_cell.length_a            51.67 
_cell.length_b            52.32 
_cell.length_c            73.97 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5DKA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,N 1 1 
B,G,H,I,J,K,L,M,O 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 37 A CYS 37 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? 
metalc ? metalc2 A SG CYS 40 A CYS 40 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? 
metalc ? metalc3 A SG CYS 52 A CYS 52 1_555 E ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? 
metalc ? metalc4 A ND1 HIS 54 A HIS 54 1_555 E ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? 
metalc ? metalc5 A SG CYS 57 A CYS 57 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? 
metalc ? metalc6 A SG CYS 60 A CYS 60 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? 
metalc ? metalc7 A SG CYS 72 A CYS 72 1_555 E ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc8 A SG CYS 75 A CYS 75 1_555 E ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? 
metalc ? metalc9 A SG CYS 100 A CYS 100 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? 
metalc ? metalc10 A SG CYS 103 A CYS 103 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? 
metalc ? metalc11 A NE2 HIS 115 A HIS 115 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
metalc ? metalc12 A SG CYS 119 A CYS 119 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? 
metalc ? metalc13 B OD1 ASP 36 B ASP 36 1_555 J MG MG . B MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? 
metalc ? metalc14 B SG CYS 37 B CYS 37 1_555 G ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? 
metalc ? metalc15 B SG CYS 40 B CYS 40 1_555 G ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? 
metalc ? metalc16 B SG CYS 52 B CYS 52 1_555 I ZN ZN . B ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? 
metalc ? metalc17 B ND1 HIS 54 B HIS 54 1_555 I ZN ZN . B ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? 
metalc ? metalc18 B SG CYS 57 B CYS 57 1_555 G ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc19 B SG CYS 60 B CYS 60 1_555 G ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc20 B SG CYS 72 B CYS 72 1_555 I ZN ZN . B ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
metalc ? metalc21 B SG CYS 75 B CYS 75 1_555 I ZN ZN . B ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? 
metalc ? metalc22 B SG CYS 100 B CYS 100 1_555 H ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? 
metalc ? metalc23 B SG CYS 103 B CYS 103 1_555 H ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? 
metalc ? metalc24 B NE2 HIS 115 B HIS 115 1_555 H ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? 
metalc ? metalc25 B SG CYS 119 B CYS 119 1_555 H ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5DKA 
_atom_sites.fract_transf_matrix[1][1]    0.019354 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019113 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013519 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 301 201 ZN ZN . 
D 2 ZN A 1 302 202 ZN ZN . 
E 2 ZN A 1 303 203 ZN ZN . 
F 3 CL A 1 304 1 CL CL . 
G 2 ZN B 1 301 201 ZN ZN . 
H 2 ZN B 1 302 202 ZN ZN . 
I 2 ZN B 1 303 203 ZN ZN . 
J 4 MG B 1 304 1 MG MG . 
K 3 CL B 1 305 2 CL CL . 
L 3 CL B 1 306 3 CL CL . 
M 3 CL B 1 307 4 CL CL . 
N 5 HOH A 1 401 132 HOH HOH . 
N 5 HOH A 2 402 85 HOH HOH . 
N 5 HOH A 3 403 49 HOH HOH . 
N 5 HOH A 4 404 121 HOH HOH . 
N 5 HOH A 5 405 60 HOH HOH . 
N 5 HOH A 6 406 72 HOH HOH . 
N 5 HOH A 7 407 90 HOH HOH . 
N 5 HOH A 8 408 126 HOH HOH . 
N 5 HOH A 9 409 124 HOH HOH . 
N 5 HOH A 10 410 16 HOH HOH . 
N 5 HOH A 11 411 55 HOH HOH . 
N 5 HOH A 12 412 109 HOH HOH . 
N 5 HOH A 13 413 59 HOH HOH . 
N 5 HOH A 14 414 7 HOH HOH . 
N 5 HOH A 15 415 28 HOH HOH . 
N 5 HOH A 16 416 33 HOH HOH . 
N 5 HOH A 17 417 127 HOH HOH . 
N 5 HOH A 18 418 118 HOH HOH . 
N 5 HOH A 19 419 2 HOH HOH . 
N 5 HOH A 20 420 117 HOH HOH . 
N 5 HOH A 21 421 15 HOH HOH . 
N 5 HOH A 22 422 112 HOH HOH . 
N 5 HOH A 23 423 38 HOH HOH . 
N 5 HOH A 24 424 102 HOH HOH . 
N 5 HOH A 25 425 9 HOH HOH . 
N 5 HOH A 26 426 54 HOH HOH . 
N 5 HOH A 27 427 131 HOH HOH . 
N 5 HOH A 28 428 10 HOH HOH . 
N 5 HOH A 29 429 120 HOH HOH . 
N 5 HOH A 30 430 50 HOH HOH . 
N 5 HOH A 31 431 8 HOH HOH . 
N 5 HOH A 32 432 70 HOH HOH . 
N 5 HOH A 33 433 129 HOH HOH . 
N 5 HOH A 34 434 119 HOH HOH . 
N 5 HOH A 35 435 56 HOH HOH . 
N 5 HOH A 36 436 31 HOH HOH . 
N 5 HOH A 37 437 139 HOH HOH . 
N 5 HOH A 38 438 3 HOH HOH . 
N 5 HOH A 39 439 61 HOH HOH . 
N 5 HOH A 40 440 32 HOH HOH . 
N 5 HOH A 41 441 101 HOH HOH . 
N 5 HOH A 42 442 5 HOH HOH . 
N 5 HOH A 43 443 44 HOH HOH . 
N 5 HOH A 44 444 99 HOH HOH . 
N 5 HOH A 45 445 122 HOH HOH . 
N 5 HOH A 46 446 123 HOH HOH . 
N 5 HOH A 47 447 128 HOH HOH . 
N 5 HOH A 48 448 6 HOH HOH . 
N 5 HOH A 49 449 51 HOH HOH . 
N 5 HOH A 50 450 30 HOH HOH . 
N 5 HOH A 51 451 29 HOH HOH . 
N 5 HOH A 52 452 47 HOH HOH . 
N 5 HOH A 53 453 137 HOH HOH . 
N 5 HOH A 54 454 46 HOH HOH . 
N 5 HOH A 55 455 111 HOH HOH . 
N 5 HOH A 56 456 45 HOH HOH . 
N 5 HOH A 57 457 130 HOH HOH . 
N 5 HOH A 58 458 4 HOH HOH . 
N 5 HOH A 59 459 105 HOH HOH . 
N 5 HOH A 60 460 84 HOH HOH . 
N 5 HOH A 61 461 35 HOH HOH . 
N 5 HOH A 62 462 125 HOH HOH . 
N 5 HOH A 63 463 57 HOH HOH . 
N 5 HOH A 64 464 58 HOH HOH . 
O 5 HOH B 1 401 107 HOH HOH . 
O 5 HOH B 2 402 65 HOH HOH . 
O 5 HOH B 3 403 53 HOH HOH . 
O 5 HOH B 4 404 94 HOH HOH . 
O 5 HOH B 5 405 95 HOH HOH . 
O 5 HOH B 6 406 83 HOH HOH . 
O 5 HOH B 7 407 135 HOH HOH . 
O 5 HOH B 8 408 110 HOH HOH . 
O 5 HOH B 9 409 12 HOH HOH . 
O 5 HOH B 10 410 21 HOH HOH . 
O 5 HOH B 11 411 115 HOH HOH . 
O 5 HOH B 12 412 141 HOH HOH . 
O 5 HOH B 13 413 104 HOH HOH . 
O 5 HOH B 14 414 100 HOH HOH . 
O 5 HOH B 15 415 75 HOH HOH . 
O 5 HOH B 16 416 68 HOH HOH . 
O 5 HOH B 17 417 13 HOH HOH . 
O 5 HOH B 18 418 78 HOH HOH . 
O 5 HOH B 19 419 11 HOH HOH . 
O 5 HOH B 20 420 17 HOH HOH . 
O 5 HOH B 21 421 14 HOH HOH . 
O 5 HOH B 22 422 71 HOH HOH . 
O 5 HOH B 23 423 34 HOH HOH . 
O 5 HOH B 24 424 96 HOH HOH . 
O 5 HOH B 25 425 113 HOH HOH . 
O 5 HOH B 26 426 40 HOH HOH . 
O 5 HOH B 27 427 48 HOH HOH . 
O 5 HOH B 28 428 19 HOH HOH . 
O 5 HOH B 29 429 22 HOH HOH . 
O 5 HOH B 30 430 43 HOH HOH . 
O 5 HOH B 31 431 25 HOH HOH . 
O 5 HOH B 32 432 81 HOH HOH . 
O 5 HOH B 33 433 66 HOH HOH . 
O 5 HOH B 34 434 140 HOH HOH . 
O 5 HOH B 35 435 24 HOH HOH . 
O 5 HOH B 36 436 133 HOH HOH . 
O 5 HOH B 37 437 37 HOH HOH . 
O 5 HOH B 38 438 62 HOH HOH . 
O 5 HOH B 39 439 27 HOH HOH . 
O 5 HOH B 40 440 116 HOH HOH . 
O 5 HOH B 41 441 76 HOH HOH . 
O 5 HOH B 42 442 136 HOH HOH . 
O 5 HOH B 43 443 73 HOH HOH . 
O 5 HOH B 44 444 26 HOH HOH . 
O 5 HOH B 45 445 69 HOH HOH . 
O 5 HOH B 46 446 106 HOH HOH . 
O 5 HOH B 47 447 80 HOH HOH . 
O 5 HOH B 48 448 20 HOH HOH . 
O 5 HOH B 49 449 64 HOH HOH . 
O 5 HOH B 50 450 138 HOH HOH . 
O 5 HOH B 51 451 63 HOH HOH . 
O 5 HOH B 52 452 89 HOH HOH . 
O 5 HOH B 53 453 18 HOH HOH . 
O 5 HOH B 54 454 1 HOH HOH . 
O 5 HOH B 55 455 93 HOH HOH . 
O 5 HOH B 56 456 134 HOH HOH . 
O 5 HOH B 57 457 142 HOH HOH . 
O 5 HOH B 58 458 42 HOH HOH . 
O 5 HOH B 59 459 79 HOH HOH . 
O 5 HOH B 60 460 39 HOH HOH . 
O 5 HOH B 61 461 82 HOH HOH . 
O 5 HOH B 62 462 88 HOH HOH . 
O 5 HOH B 63 463 98 HOH HOH . 
O 5 HOH B 64 464 36 HOH HOH . 
O 5 HOH B 65 465 114 HOH HOH . 
O 5 HOH B 66 466 97 HOH HOH . 
O 5 HOH B 67 467 23 HOH HOH . 
O 5 HOH B 68 468 41 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               16.905 
_atom_site.Cartn_y               -9.935 
_atom_site.Cartn_z               -11.633 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        19.2 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           301 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           1 
#