data_5DKB # _model_server_result.job_id RYiBtlosvXKeUAPj2DreHA _model_server_result.datetime_utc '2024-10-12 16:33:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dkb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":602}' # _entry.id 5DKB # _exptl.entry_id 5DKB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 421.53 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "4,4'-(2-{3-[(3-methylphenyl)amino]phenyl}but-1-ene-1,1-diyl)diphenol" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.32 _cell.angle_gamma 90 _cell.entry_id 5DKB _cell.length_a 56.347 _cell.length_b 82.844 _cell.length_c 58.458 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DKB _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N # _chem_comp.formula 'C29 H27 N O2' _chem_comp.formula_weight 421.53 _chem_comp.id 5C9 _chem_comp.mon_nstd_flag . _chem_comp.name "4,4'-(2-{3-[(3-methylphenyl)amino]phenyl}but-1-ene-1,1-diyl)diphenol" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C30 C29 5C9 sing 1 n n C28 C29 5C9 doub 2 n y C28 C27 5C9 sing 3 n y C29 C31 5C9 sing 4 n y C27 C26 5C9 doub 5 n y C31 C25 5C9 doub 6 n y C26 C25 5C9 sing 7 n y C25 N24 5C9 sing 8 n n C22 C21 5C9 doub 9 n y C22 C23 5C9 sing 10 n y C21 C20 5C9 sing 11 n y N24 C23 5C9 sing 12 n n C23 C32 5C9 doub 13 n y C20 C19 5C9 doub 14 n y C32 C19 5C9 sing 15 n y C19 C03 5C9 sing 16 n n C01 C02 5C9 sing 17 n n O09 C08 5C9 sing 18 n n C03 C02 5C9 sing 19 n n C03 C04 5C9 doub 20 n n C08 C07 5C9 doub 21 n y C08 C10 5C9 sing 22 n y C07 C06 5C9 sing 23 n y C10 C11 5C9 doub 24 n y C06 C05 5C9 doub 25 n y C11 C05 5C9 sing 26 n y C05 C04 5C9 sing 27 n n C04 C12 5C9 sing 28 n n C13 C12 5C9 doub 29 n y C13 C14 5C9 sing 30 n y C12 C18 5C9 sing 31 n y C14 C15 5C9 doub 32 n y C18 C17 5C9 doub 33 n y C15 C17 5C9 sing 34 n y C15 O16 5C9 sing 35 n n C01 H1 5C9 sing 36 n n C01 H2 5C9 sing 37 n n C01 H3 5C9 sing 38 n n C02 H4 5C9 sing 39 n n C02 H5 5C9 sing 40 n n C06 H8 5C9 sing 41 n n C07 H9 5C9 sing 42 n n O09 H10 5C9 sing 43 n n C10 H11 5C9 sing 44 n n C11 H12 5C9 sing 45 n n C13 H13 5C9 sing 46 n n C14 H14 5C9 sing 47 n n O16 H15 5C9 sing 48 n n C17 H16 5C9 sing 49 n n C18 H17 5C9 sing 50 n n C20 H18 5C9 sing 51 n n C21 H19 5C9 sing 52 n n C22 H20 5C9 sing 53 n n N24 H21 5C9 sing 54 n n C26 H22 5C9 sing 55 n n C27 H23 5C9 sing 56 n n C28 H24 5C9 sing 57 n n C30 H25 5C9 sing 58 n n C30 H26 5C9 sing 59 n n C30 H27 5C9 sing 60 n n C31 H28 5C9 sing 61 n n C32 H29 5C9 sing 62 n n # _atom_sites.entry_id 5DKB _atom_sites.fract_transf_matrix[1][1] 0.017747 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006926 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012071 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018363 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 5C9 A 1 601 1 5C9 UNK . F 3 5C9 A 1 602 1 5C9 UNK . G 3 5C9 B 1 601 1 5C9 UNK . H 4 HOH A 1 701 53 HOH HOH . H 4 HOH A 2 702 92 HOH HOH . H 4 HOH A 3 703 16 HOH HOH . H 4 HOH A 4 704 31 HOH HOH . H 4 HOH A 5 705 88 HOH HOH . H 4 HOH A 6 706 33 HOH HOH . H 4 HOH A 7 707 29 HOH HOH . H 4 HOH A 8 708 23 HOH HOH . H 4 HOH A 9 709 52 HOH HOH . H 4 HOH A 10 710 20 HOH HOH . H 4 HOH A 11 711 3 HOH HOH . H 4 HOH A 12 712 77 HOH HOH . H 4 HOH A 13 713 26 HOH HOH . H 4 HOH A 14 714 90 HOH HOH . H 4 HOH A 15 715 57 HOH HOH . H 4 HOH A 16 716 47 HOH HOH . H 4 HOH A 17 717 6 HOH HOH . H 4 HOH A 18 718 81 HOH HOH . H 4 HOH A 19 719 18 HOH HOH . H 4 HOH A 20 720 84 HOH HOH . H 4 HOH A 21 721 101 HOH HOH . H 4 HOH A 22 722 49 HOH HOH . H 4 HOH A 23 723 7 HOH HOH . H 4 HOH A 24 724 79 HOH HOH . H 4 HOH A 25 725 37 HOH HOH . H 4 HOH A 26 726 40 HOH HOH . H 4 HOH A 27 727 46 HOH HOH . H 4 HOH A 28 728 27 HOH HOH . H 4 HOH A 29 729 12 HOH HOH . H 4 HOH A 30 730 2 HOH HOH . H 4 HOH A 31 731 11 HOH HOH . H 4 HOH A 32 732 61 HOH HOH . H 4 HOH A 33 733 82 HOH HOH . H 4 HOH A 34 734 85 HOH HOH . H 4 HOH A 35 735 58 HOH HOH . H 4 HOH A 36 736 15 HOH HOH . H 4 HOH A 37 737 54 HOH HOH . H 4 HOH A 38 738 78 HOH HOH . H 4 HOH A 39 739 25 HOH HOH . H 4 HOH A 40 740 107 HOH HOH . H 4 HOH A 41 741 42 HOH HOH . H 4 HOH A 42 742 50 HOH HOH . H 4 HOH A 43 743 98 HOH HOH . H 4 HOH A 44 744 65 HOH HOH . H 4 HOH A 45 745 76 HOH HOH . H 4 HOH A 46 746 87 HOH HOH . H 4 HOH A 47 747 93 HOH HOH . H 4 HOH A 48 748 66 HOH HOH . H 4 HOH A 49 749 109 HOH HOH . H 4 HOH A 50 750 97 HOH HOH . H 4 HOH A 51 751 38 HOH HOH . I 4 HOH B 1 701 104 HOH HOH . I 4 HOH B 2 702 75 HOH HOH . I 4 HOH B 3 703 17 HOH HOH . I 4 HOH B 4 704 64 HOH HOH . I 4 HOH B 5 705 22 HOH HOH . I 4 HOH B 6 706 19 HOH HOH . I 4 HOH B 7 707 60 HOH HOH . I 4 HOH B 8 708 34 HOH HOH . I 4 HOH B 9 709 95 HOH HOH . I 4 HOH B 10 710 59 HOH HOH . I 4 HOH B 11 711 55 HOH HOH . I 4 HOH B 12 712 5 HOH HOH . I 4 HOH B 13 713 24 HOH HOH . I 4 HOH B 14 714 67 HOH HOH . I 4 HOH B 15 715 39 HOH HOH . I 4 HOH B 16 716 48 HOH HOH . I 4 HOH B 17 717 1 HOH HOH . I 4 HOH B 18 718 4 HOH HOH . I 4 HOH B 19 719 30 HOH HOH . I 4 HOH B 20 720 36 HOH HOH . I 4 HOH B 21 721 43 HOH HOH . I 4 HOH B 22 722 41 HOH HOH . I 4 HOH B 23 723 45 HOH HOH . I 4 HOH B 24 724 51 HOH HOH . I 4 HOH B 25 725 10 HOH HOH . I 4 HOH B 26 726 13 HOH HOH . I 4 HOH B 27 727 63 HOH HOH . I 4 HOH B 28 728 32 HOH HOH . I 4 HOH B 29 729 35 HOH HOH . I 4 HOH B 30 730 21 HOH HOH . I 4 HOH B 31 731 44 HOH HOH . I 4 HOH B 32 732 89 HOH HOH . I 4 HOH B 33 733 62 HOH HOH . I 4 HOH B 34 734 103 HOH HOH . I 4 HOH B 35 735 70 HOH HOH . I 4 HOH B 36 736 8 HOH HOH . I 4 HOH B 37 737 99 HOH HOH . I 4 HOH B 38 738 102 HOH HOH . I 4 HOH B 39 739 68 HOH HOH . I 4 HOH B 40 740 56 HOH HOH . I 4 HOH B 41 741 80 HOH HOH . I 4 HOH B 42 742 14 HOH HOH . I 4 HOH B 43 743 74 HOH HOH . I 4 HOH B 44 744 105 HOH HOH . I 4 HOH B 45 745 73 HOH HOH . I 4 HOH B 46 746 71 HOH HOH . I 4 HOH B 47 747 91 HOH HOH . I 4 HOH B 48 748 94 HOH HOH . I 4 HOH B 49 749 96 HOH HOH . I 4 HOH B 50 750 100 HOH HOH . I 4 HOH B 51 751 108 HOH HOH . I 4 HOH B 52 752 72 HOH HOH . I 4 HOH B 53 753 69 HOH HOH . I 4 HOH B 54 754 9 HOH HOH . I 4 HOH B 55 755 106 HOH HOH . I 4 HOH B 56 756 83 HOH HOH . I 4 HOH B 57 757 28 HOH HOH . J 4 HOH C 1 701 86 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 5C9 . B . F 3 -16.102 -27.833 -5.842 0.4 37.64 ? C01 5C9 602 A 1 HETATM 2 C C02 5C9 . B . F 3 -17.47 -27.932 -5.264 0.4 37.11 ? C02 5C9 602 A 1 HETATM 3 C C03 5C9 . B . F 3 -18.442 -26.863 -5.655 0.4 36.71 ? C03 5C9 602 A 1 HETATM 4 C C04 5C9 . B . F 3 -19.005 -25.991 -4.726 0.4 32.86 ? C04 5C9 602 A 1 HETATM 5 C C05 5C9 . B . F 3 -20.36 -25.407 -4.976 0.4 31.26 ? C05 5C9 602 A 1 HETATM 6 C C06 5C9 . B . F 3 -20.504 -24.037 -5.141 0.4 29.54 ? C06 5C9 602 A 1 HETATM 7 C C07 5C9 . B . F 3 -21.76 -23.491 -5.37 0.4 29.56 ? C07 5C9 602 A 1 HETATM 8 C C08 5C9 . B . F 3 -22.874 -24.318 -5.435 0.4 31.21 ? C08 5C9 602 A 1 HETATM 9 O O09 5C9 . B . F 3 -24.118 -23.78 -5.665 0.4 33.37 ? O09 5C9 602 A 1 HETATM 10 C C10 5C9 . B . F 3 -22.735 -25.689 -5.27 0.4 30.89 ? C10 5C9 602 A 1 HETATM 11 C C11 5C9 . B . F 3 -21.479 -26.232 -5.036 0.4 31.1 ? C11 5C9 602 A 1 HETATM 12 C C12 5C9 . B . F 3 -18.283 -25.509 -3.491 0.4 31.01 ? C12 5C9 602 A 1 HETATM 13 C C13 5C9 . B . F 3 -16.931 -25.181 -3.524 0.4 29.6 ? C13 5C9 602 A 1 HETATM 14 C C14 5C9 . B . F 3 -16.282 -24.738 -2.378 0.4 29.25 ? C14 5C9 602 A 1 HETATM 15 C C15 5C9 . B . F 3 -16.988 -24.603 -1.191 0.4 30.13 ? C15 5C9 602 A 1 HETATM 16 O O16 5C9 . B . F 3 -16.345 -24.159 -0.055 0.4 31.14 ? O16 5C9 602 A 1 HETATM 17 C C17 5C9 . B . F 3 -18.34 -24.918 -1.15 0.4 30.39 ? C17 5C9 602 A 1 HETATM 18 C C18 5C9 . B . F 3 -18.984 -25.367 -2.298 0.4 31.59 ? C18 5C9 602 A 1 HETATM 19 C C19 5C9 . B . F 3 -19.061 -27.059 -7.015 0.4 41.81 ? C19 5C9 602 A 1 HETATM 20 C C20 5C9 . B . F 3 -19.123 -26.03 -7.949 0.4 42.77 ? C20 5C9 602 A 1 HETATM 21 C C21 5C9 . B . F 3 -19.702 -26.264 -9.196 0.4 43.66 ? C21 5C9 602 A 1 HETATM 22 C C22 5C9 . B . F 3 -20.21 -27.522 -9.512 0.4 44.71 ? C22 5C9 602 A 1 HETATM 23 C C23 5C9 . B . F 3 -20.138 -28.553 -8.583 0.4 46.55 ? C23 5C9 602 A 1 HETATM 24 N N24 5C9 . B . F 3 -20.651 -29.868 -8.862 0.4 51.14 ? N24 5C9 602 A 1 HETATM 25 C C25 5C9 . B . F 3 -20.797 -30.414 -10.187 0.4 54.39 ? C25 5C9 602 A 1 HETATM 26 C C26 5C9 . B . F 3 -19.709 -30.593 -11.03 0.4 55.93 ? C26 5C9 602 A 1 HETATM 27 C C27 5C9 . B . F 3 -19.892 -31.131 -12.3 0.4 57.44 ? C27 5C9 602 A 1 HETATM 28 C C28 5C9 . B . F 3 -21.161 -31.493 -12.726 0.4 58.48 ? C28 5C9 602 A 1 HETATM 29 C C29 5C9 . B . F 3 -22.251 -31.318 -11.884 0.4 58.32 ? C29 5C9 602 A 1 HETATM 30 C C30 5C9 . B . F 3 -23.619 -31.707 -12.336 0.4 58.88 ? C30 5C9 602 A 1 HETATM 31 C C31 5C9 . B . F 3 -22.065 -30.782 -10.617 0.4 56.5 ? C31 5C9 602 A 1 HETATM 32 C C32 5C9 . B . F 3 -19.562 -28.313 -7.337 0.4 43.92 ? C32 5C9 602 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #