data_5DKC
#
_model_server_result.job_id            8tf3uu1FUAC6pCwmYjGpNg 
_model_server_result.datetime_utc      '2025-01-11 07:54:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5dkc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1502}' 
#
_entry.id    5DKC 
#
_exptl.entry_id    5DKC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              321.373 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2E)-1-(2-hydroxyphenyl)-3-[(1R,4R)-5-(pyridin-2-yl)-2,5-diazabicyclo[2.2.1]hept-2-yl]prop-2-en-1-one 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5DKC 
_cell.length_a            74.424 
_cell.length_b            74.424 
_cell.length_c            89.856 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5DKC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 71 A HIS 1441 1_555 B ZN ZN . A ZN 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? 
metalc ? metalc2 A NE2 HIS 88 A HIS 1458 1_555 B ZN ZN . A ZN 1501 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? 
metalc ? metalc3 B ZN ZN . A ZN 1501 1_555 D O HOH . A HOH 1617 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.666 ? 
metalc ? metalc4 B ZN ZN . A ZN 1501 1_555 D O HOH . A HOH 1677 9_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
metalc ? metalc5 B ZN ZN . A ZN 1501 1_555 D O HOH . A HOH 1684 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? 
#
_chem_comp.formula           'C19 H19 N3 O2' 
_chem_comp.formula_weight    321.373 
_chem_comp.id                5BW 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2E)-1-(2-hydroxyphenyl)-3-[(1R,4R)-5-(pyridin-2-yl)-2,5-diazabicyclo[2.2.1]hept-2-yl]prop-2-en-1-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAA CAB 5BW doub 1 n y 
CAA CAF 5BW sing 2 n y 
CAB CAC 5BW sing 3 n y 
CAT CAU 5BW doub 4 n y 
CAT NAS 5BW sing 5 n y 
CAF CAE 5BW doub 6 n y 
CAC CAD 5BW doub 7 n y 
CAU CAV 5BW sing 8 n y 
NAS CAR 5BW doub 9 n y 
CAE CAD 5BW sing 10 n y 
CAE CAG 5BW sing 11 n n 
CAD OAJ 5BW sing 12 n n 
CAV CAW 5BW doub 13 n y 
CAQ CAP 5BW sing 14 n n 
CAQ NAL 5BW sing 15 n n 
CAR CAW 5BW sing 16 n y 
CAR NAO 5BW sing 17 n n 
CAH CAG 5BW sing 18 n n 
CAH CAK 5BW doub 19 e n 
CAG OAI 5BW doub 20 n n 
CAP NAO 5BW sing 21 n n 
CAP CAX 5BW sing 22 n n 
NAO CAN 5BW sing 23 n n 
NAL CAK 5BW sing 24 n n 
NAL CAM 5BW sing 25 n n 
CAX CAM 5BW sing 26 n n 
CAN CAM 5BW sing 27 n n 
CAW H1 5BW sing 28 n n 
CAV H2 5BW sing 29 n n 
CAU H3 5BW sing 30 n n 
CAT H4 5BW sing 31 n n 
CAN H5 5BW sing 32 n n 
CAN H6 5BW sing 33 n n 
CAM H7 5BW sing 34 n n 
CAX H8 5BW sing 35 n n 
CAX H9 5BW sing 36 n n 
CAP H10 5BW sing 37 n n 
CAQ H11 5BW sing 38 n n 
CAQ H12 5BW sing 39 n n 
CAK H13 5BW sing 40 n n 
CAH H14 5BW sing 41 n n 
CAF H15 5BW sing 42 n n 
CAA H16 5BW sing 43 n n 
CAB H17 5BW sing 44 n n 
CAC H18 5BW sing 45 n n 
OAJ H19 5BW sing 46 n n 
#
_atom_sites.entry_id                     5DKC 
_atom_sites.fract_transf_matrix[1][1]    0.013437 
_atom_sites.fract_transf_matrix[1][2]    0.007758 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015515 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011129 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 1501 1 ZN ZN . 
C 3 5BW A 1 1502 1 5BW DRG . 
D 4 HOH A 1 1601 31 HOH HOH . 
D 4 HOH A 2 1602 100 HOH HOH . 
D 4 HOH A 3 1603 80 HOH HOH . 
D 4 HOH A 4 1604 113 HOH HOH . 
D 4 HOH A 5 1605 42 HOH HOH . 
D 4 HOH A 6 1606 16 HOH HOH . 
D 4 HOH A 7 1607 30 HOH HOH . 
D 4 HOH A 8 1608 82 HOH HOH . 
D 4 HOH A 9 1609 13 HOH HOH . 
D 4 HOH A 10 1610 84 HOH HOH . 
D 4 HOH A 11 1611 56 HOH HOH . 
D 4 HOH A 12 1612 83 HOH HOH . 
D 4 HOH A 13 1613 3 HOH HOH . 
D 4 HOH A 14 1614 48 HOH HOH . 
D 4 HOH A 15 1615 54 HOH HOH . 
D 4 HOH A 16 1616 64 HOH HOH . 
D 4 HOH A 17 1617 44 HOH HOH . 
D 4 HOH A 18 1618 20 HOH HOH . 
D 4 HOH A 19 1619 37 HOH HOH . 
D 4 HOH A 20 1620 47 HOH HOH . 
D 4 HOH A 21 1621 29 HOH HOH . 
D 4 HOH A 22 1622 105 HOH HOH . 
D 4 HOH A 23 1623 51 HOH HOH . 
D 4 HOH A 24 1624 5 HOH HOH . 
D 4 HOH A 25 1625 4 HOH HOH . 
D 4 HOH A 26 1626 41 HOH HOH . 
D 4 HOH A 27 1627 46 HOH HOH . 
D 4 HOH A 28 1628 85 HOH HOH . 
D 4 HOH A 29 1629 7 HOH HOH . 
D 4 HOH A 30 1630 86 HOH HOH . 
D 4 HOH A 31 1631 2 HOH HOH . 
D 4 HOH A 32 1632 15 HOH HOH . 
D 4 HOH A 33 1633 73 HOH HOH . 
D 4 HOH A 34 1634 98 HOH HOH . 
D 4 HOH A 35 1635 81 HOH HOH . 
D 4 HOH A 36 1636 28 HOH HOH . 
D 4 HOH A 37 1637 108 HOH HOH . 
D 4 HOH A 38 1638 79 HOH HOH . 
D 4 HOH A 39 1639 77 HOH HOH . 
D 4 HOH A 40 1640 21 HOH HOH . 
D 4 HOH A 41 1641 1 HOH HOH . 
D 4 HOH A 42 1642 75 HOH HOH . 
D 4 HOH A 43 1643 32 HOH HOH . 
D 4 HOH A 44 1644 66 HOH HOH . 
D 4 HOH A 45 1645 106 HOH HOH . 
D 4 HOH A 46 1646 12 HOH HOH . 
D 4 HOH A 47 1647 25 HOH HOH . 
D 4 HOH A 48 1648 26 HOH HOH . 
D 4 HOH A 49 1649 8 HOH HOH . 
D 4 HOH A 50 1650 23 HOH HOH . 
D 4 HOH A 51 1651 22 HOH HOH . 
D 4 HOH A 52 1652 18 HOH HOH . 
D 4 HOH A 53 1653 19 HOH HOH . 
D 4 HOH A 54 1654 17 HOH HOH . 
D 4 HOH A 55 1655 52 HOH HOH . 
D 4 HOH A 56 1656 53 HOH HOH . 
D 4 HOH A 57 1657 78 HOH HOH . 
D 4 HOH A 58 1658 63 HOH HOH . 
D 4 HOH A 59 1659 27 HOH HOH . 
D 4 HOH A 60 1660 62 HOH HOH . 
D 4 HOH A 61 1661 10 HOH HOH . 
D 4 HOH A 62 1662 11 HOH HOH . 
D 4 HOH A 63 1663 38 HOH HOH . 
D 4 HOH A 64 1664 72 HOH HOH . 
D 4 HOH A 65 1665 14 HOH HOH . 
D 4 HOH A 66 1666 50 HOH HOH . 
D 4 HOH A 67 1667 74 HOH HOH . 
D 4 HOH A 68 1668 9 HOH HOH . 
D 4 HOH A 69 1669 76 HOH HOH . 
D 4 HOH A 70 1670 33 HOH HOH . 
D 4 HOH A 71 1671 71 HOH HOH . 
D 4 HOH A 72 1672 87 HOH HOH . 
D 4 HOH A 73 1673 6 HOH HOH . 
D 4 HOH A 74 1674 65 HOH HOH . 
D 4 HOH A 75 1675 24 HOH HOH . 
D 4 HOH A 76 1676 34 HOH HOH . 
D 4 HOH A 77 1677 67 HOH HOH . 
D 4 HOH A 78 1678 68 HOH HOH . 
D 4 HOH A 79 1679 88 HOH HOH . 
D 4 HOH A 80 1680 35 HOH HOH . 
D 4 HOH A 81 1681 69 HOH HOH . 
D 4 HOH A 82 1682 70 HOH HOH . 
D 4 HOH A 83 1683 36 HOH HOH . 
D 4 HOH A 84 1684 58 HOH HOH . 
D 4 HOH A 85 1685 107 HOH HOH . 
D 4 HOH A 86 1686 109 HOH HOH . 
D 4 HOH A 87 1687 96 HOH HOH . 
D 4 HOH A 88 1688 99 HOH HOH . 
D 4 HOH A 89 1689 111 HOH HOH . 
D 4 HOH A 90 1690 92 HOH HOH . 
D 4 HOH A 91 1691 112 HOH HOH . 
D 4 HOH A 92 1692 59 HOH HOH . 
D 4 HOH A 93 1693 103 HOH HOH . 
D 4 HOH A 94 1694 89 HOH HOH . 
D 4 HOH A 95 1695 40 HOH HOH . 
D 4 HOH A 96 1696 97 HOH HOH . 
D 4 HOH A 97 1697 49 HOH HOH . 
D 4 HOH A 98 1698 57 HOH HOH . 
D 4 HOH A 99 1699 110 HOH HOH . 
D 4 HOH A 100 1700 93 HOH HOH . 
D 4 HOH A 101 1701 101 HOH HOH . 
D 4 HOH A 102 1702 39 HOH HOH . 
D 4 HOH A 103 1703 90 HOH HOH . 
D 4 HOH A 104 1704 91 HOH HOH . 
D 4 HOH A 105 1705 95 HOH HOH . 
D 4 HOH A 106 1706 104 HOH HOH . 
D 4 HOH A 107 1707 94 HOH HOH . 
D 4 HOH A 108 1708 55 HOH HOH . 
D 4 HOH A 109 1709 43 HOH HOH . 
D 4 HOH A 110 1710 45 HOH HOH . 
D 4 HOH A 111 1711 114 HOH HOH . 
D 4 HOH A 112 1712 60 HOH HOH . 
D 4 HOH A 113 1713 102 HOH HOH . 
D 4 HOH A 114 1714 61 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAW 5BW . . . C 3 14.599 38.264 61.04 1 23.74 ? CAW 5BW 1502 A 1 
HETATM 2 C CAV 5BW . . . C 3 15.319 39.033 60.121 1 25.98 ? CAV 5BW 1502 A 1 
HETATM 3 C CAU 5BW . . . C 3 14.797 39.224 58.858 1 22.81 ? CAU 5BW 1502 A 1 
HETATM 4 C CAT 5BW . . . C 3 13.597 38.633 58.51 1 23.67 ? CAT 5BW 1502 A 1 
HETATM 5 N NAS 5BW . . . C 3 12.889 37.857 59.42 1 23.69 ? NAS 5BW 1502 A 1 
HETATM 6 C CAR 5BW . . . C 3 13.395 37.699 60.663 1 24.02 ? CAR 5BW 1502 A 1 
HETATM 7 N NAO 5BW . . . C 3 12.68 36.975 61.535 1 24.48 ? NAO 5BW 1502 A 1 
HETATM 8 C CAN 5BW . . . C 3 13.165 36.377 62.771 1 24.58 ? CAN 5BW 1502 A 1 
HETATM 9 C CAM 5BW . . . C 3 12.128 35.317 62.947 1 24.76 ? CAM 5BW 1502 A 1 
HETATM 10 C CAX 5BW . . . C 3 10.899 36.075 62.679 1 25.74 ? CAX 5BW 1502 A 1 
HETATM 11 C CAP 5BW . . . C 3 11.373 36.447 61.279 1 23.76 ? CAP 5BW 1502 A 1 
HETATM 12 C CAQ 5BW . . . C 3 11.524 35.054 60.651 1 23.86 ? CAQ 5BW 1502 A 1 
HETATM 13 N NAL 5BW . . . C 3 12.295 34.434 61.773 1 23.88 ? NAL 5BW 1502 A 1 
HETATM 14 C CAK 5BW . . . C 3 12.293 33.12 61.94 1 21.99 ? CAK 5BW 1502 A 1 
HETATM 15 C CAH 5BW . . . C 3 12.121 32.239 60.746 1 19.79 ? CAH 5BW 1502 A 1 
HETATM 16 C CAG 5BW . . . C 3 12.239 30.741 60.899 1 21.39 ? CAG 5BW 1502 A 1 
HETATM 17 O OAI 5BW . . . C 3 12.546 30.31 62.025 1 21.39 ? OAI 5BW 1502 A 1 
HETATM 18 C CAE 5BW . . . C 3 11.952 29.951 59.765 1 18.62 ? CAE 5BW 1502 A 1 
HETATM 19 C CAF 5BW . . . C 3 11.42 30.463 58.535 1 19.86 ? CAF 5BW 1502 A 1 
HETATM 20 C CAA 5BW . . . C 3 11.152 29.625 57.478 1 20.06 ? CAA 5BW 1502 A 1 
HETATM 21 C CAB 5BW . . . C 3 11.36 28.255 57.583 1 20.29 ? CAB 5BW 1502 A 1 
HETATM 22 C CAC 5BW . . . C 3 11.862 27.713 58.761 1 18.83 ? CAC 5BW 1502 A 1 
HETATM 23 C CAD 5BW . . . C 3 12.166 28.562 59.817 1 18.9 ? CAD 5BW 1502 A 1 
HETATM 24 O OAJ 5BW . . . C 3 12.735 28.1 60.973 1 20.61 ? OAJ 5BW 1502 A 1 
#
_model_server_stats.io_time_ms              49 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           24 
#