data_5DKG
#
_model_server_result.job_id            y0C-5_oeDWeyA3E1hT-IXQ 
_model_server_result.datetime_utc      '2024-11-25 13:50:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5dkg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":601}' 
#
_entry.id    5DKG 
#
_exptl.entry_id    5DKG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              358.473 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "4,4'-[2-(4-tert-butylphenyl)prop-1-ene-1,1-diyl]diphenol" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          110.83 
_cell.angle_gamma         90 
_cell.entry_id            5DKG 
_cell.length_a            56.339 
_cell.length_b            82.08 
_cell.length_c            58.622 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5DKG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
#
_chem_comp.formula           'C25 H26 O2' 
_chem_comp.formula_weight    358.473 
_chem_comp.id                5C7 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "4,4'-[2-(4-tert-butylphenyl)prop-1-ene-1,1-diyl]diphenol" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O08 C07 5C7 sing 1 n n 
C16 C17 5C7 doub 2 n y 
C16 C14 5C7 sing 3 n y 
C06 C07 5C7 doub 4 n y 
C06 C05 5C7 sing 5 n y 
C07 C09 5C7 sing 6 n y 
C17 C11 5C7 sing 7 n y 
O15 C14 5C7 sing 8 n n 
C05 C04 5C7 doub 9 n y 
C14 C13 5C7 doub 10 n y 
C09 C10 5C7 doub 11 n y 
C04 C10 5C7 sing 12 n y 
C04 C03 5C7 sing 13 n n 
C11 C03 5C7 sing 14 n n 
C11 C12 5C7 doub 15 n y 
C13 C12 5C7 sing 16 n y 
C03 C02 5C7 doub 17 n n 
C19 C20 5C7 doub 18 n y 
C19 C18 5C7 sing 19 n y 
C02 C01 5C7 sing 20 n n 
C02 C18 5C7 sing 21 n n 
C20 C21 5C7 sing 22 n y 
C18 C27 5C7 doub 23 n y 
C23 C22 5C7 sing 24 n n 
C21 C22 5C7 sing 25 n n 
C21 C26 5C7 doub 26 n y 
C25 C22 5C7 sing 27 n n 
C27 C26 5C7 sing 28 n y 
C22 C24 5C7 sing 29 n n 
C01 H1 5C7 sing 30 n n 
C01 H2 5C7 sing 31 n n 
C01 H3 5C7 sing 32 n n 
C05 H4 5C7 sing 33 n n 
C06 H5 5C7 sing 34 n n 
O08 H6 5C7 sing 35 n n 
C09 H7 5C7 sing 36 n n 
C10 H8 5C7 sing 37 n n 
C12 H9 5C7 sing 38 n n 
C13 H10 5C7 sing 39 n n 
O15 H11 5C7 sing 40 n n 
C16 H12 5C7 sing 41 n n 
C17 H13 5C7 sing 42 n n 
C19 H14 5C7 sing 43 n n 
C20 H15 5C7 sing 44 n n 
C23 H16 5C7 sing 45 n n 
C23 H17 5C7 sing 46 n n 
C23 H18 5C7 sing 47 n n 
C24 H19 5C7 sing 48 n n 
C24 H20 5C7 sing 49 n n 
C24 H21 5C7 sing 50 n n 
C25 H22 5C7 sing 51 n n 
C25 H23 5C7 sing 52 n n 
C25 H24 5C7 sing 53 n n 
C26 H25 5C7 sing 54 n n 
C27 H26 5C7 sing 55 n n 
#
_atom_sites.entry_id                     5DKG 
_atom_sites.fract_transf_matrix[1][1]    0.01775 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006753 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012183 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018251 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 5C7 A 1 601 1 5C7 UNK . 
F 3 5C7 B 1 601 1 5C7 UNK . 
G 4 HOH A 1 701 68 HOH HOH . 
G 4 HOH A 2 702 175 HOH HOH . 
G 4 HOH A 3 703 92 HOH HOH . 
G 4 HOH A 4 704 109 HOH HOH . 
G 4 HOH A 5 705 147 HOH HOH . 
G 4 HOH A 6 706 87 HOH HOH . 
G 4 HOH A 7 707 42 HOH HOH . 
G 4 HOH A 8 708 10 HOH HOH . 
G 4 HOH A 9 709 96 HOH HOH . 
G 4 HOH A 10 710 155 HOH HOH . 
G 4 HOH A 11 711 110 HOH HOH . 
G 4 HOH A 12 712 21 HOH HOH . 
G 4 HOH A 13 713 4 HOH HOH . 
G 4 HOH A 14 714 20 HOH HOH . 
G 4 HOH A 15 715 91 HOH HOH . 
G 4 HOH A 16 716 81 HOH HOH . 
G 4 HOH A 17 717 44 HOH HOH . 
G 4 HOH A 18 718 84 HOH HOH . 
G 4 HOH A 19 719 80 HOH HOH . 
G 4 HOH A 20 720 18 HOH HOH . 
G 4 HOH A 21 721 168 HOH HOH . 
G 4 HOH A 22 722 27 HOH HOH . 
G 4 HOH A 23 723 108 HOH HOH . 
G 4 HOH A 24 724 181 HOH HOH . 
G 4 HOH A 25 725 6 HOH HOH . 
G 4 HOH A 26 726 14 HOH HOH . 
G 4 HOH A 27 727 12 HOH HOH . 
G 4 HOH A 28 728 66 HOH HOH . 
G 4 HOH A 29 729 174 HOH HOH . 
G 4 HOH A 30 730 182 HOH HOH . 
G 4 HOH A 31 731 102 HOH HOH . 
G 4 HOH A 32 732 34 HOH HOH . 
G 4 HOH A 33 733 146 HOH HOH . 
G 4 HOH A 34 734 75 HOH HOH . 
G 4 HOH A 35 735 17 HOH HOH . 
G 4 HOH A 36 736 72 HOH HOH . 
G 4 HOH A 37 737 163 HOH HOH . 
G 4 HOH A 38 738 7 HOH HOH . 
G 4 HOH A 39 739 116 HOH HOH . 
G 4 HOH A 40 740 26 HOH HOH . 
G 4 HOH A 41 741 25 HOH HOH . 
G 4 HOH A 42 742 30 HOH HOH . 
G 4 HOH A 43 743 177 HOH HOH . 
G 4 HOH A 44 744 19 HOH HOH . 
G 4 HOH A 45 745 39 HOH HOH . 
G 4 HOH A 46 746 56 HOH HOH . 
G 4 HOH A 47 747 171 HOH HOH . 
G 4 HOH A 48 748 67 HOH HOH . 
G 4 HOH A 49 749 157 HOH HOH . 
G 4 HOH A 50 750 112 HOH HOH . 
G 4 HOH A 51 751 35 HOH HOH . 
G 4 HOH A 52 752 59 HOH HOH . 
G 4 HOH A 53 753 139 HOH HOH . 
G 4 HOH A 54 754 94 HOH HOH . 
G 4 HOH A 55 755 49 HOH HOH . 
G 4 HOH A 56 756 78 HOH HOH . 
G 4 HOH A 57 757 52 HOH HOH . 
G 4 HOH A 58 758 131 HOH HOH . 
G 4 HOH A 59 759 8 HOH HOH . 
G 4 HOH A 60 760 57 HOH HOH . 
G 4 HOH A 61 761 51 HOH HOH . 
G 4 HOH A 62 762 61 HOH HOH . 
G 4 HOH A 63 763 60 HOH HOH . 
G 4 HOH A 64 764 126 HOH HOH . 
G 4 HOH A 65 765 1 HOH HOH . 
G 4 HOH A 66 766 22 HOH HOH . 
G 4 HOH A 67 767 65 HOH HOH . 
G 4 HOH A 68 768 172 HOH HOH . 
G 4 HOH A 69 769 170 HOH HOH . 
G 4 HOH A 70 770 119 HOH HOH . 
G 4 HOH A 71 771 149 HOH HOH . 
G 4 HOH A 72 772 105 HOH HOH . 
G 4 HOH A 73 773 113 HOH HOH . 
G 4 HOH A 74 774 124 HOH HOH . 
G 4 HOH A 75 775 114 HOH HOH . 
G 4 HOH A 76 776 134 HOH HOH . 
G 4 HOH A 77 777 117 HOH HOH . 
G 4 HOH A 78 778 148 HOH HOH . 
G 4 HOH A 79 779 111 HOH HOH . 
G 4 HOH A 80 780 167 HOH HOH . 
G 4 HOH A 81 781 99 HOH HOH . 
G 4 HOH A 82 782 188 HOH HOH . 
G 4 HOH A 83 783 142 HOH HOH . 
G 4 HOH A 84 784 151 HOH HOH . 
G 4 HOH A 85 785 185 HOH HOH . 
G 4 HOH A 86 786 158 HOH HOH . 
G 4 HOH A 87 787 46 HOH HOH . 
G 4 HOH A 88 788 169 HOH HOH . 
G 4 HOH A 89 789 164 HOH HOH . 
G 4 HOH A 90 790 140 HOH HOH . 
H 4 HOH B 1 701 135 HOH HOH . 
H 4 HOH B 2 702 90 HOH HOH . 
H 4 HOH B 3 703 145 HOH HOH . 
H 4 HOH B 4 704 137 HOH HOH . 
H 4 HOH B 5 705 100 HOH HOH . 
H 4 HOH B 6 706 129 HOH HOH . 
H 4 HOH B 7 707 160 HOH HOH . 
H 4 HOH B 8 708 62 HOH HOH . 
H 4 HOH B 9 709 23 HOH HOH . 
H 4 HOH B 10 710 48 HOH HOH . 
H 4 HOH B 11 711 183 HOH HOH . 
H 4 HOH B 12 712 3 HOH HOH . 
H 4 HOH B 13 713 37 HOH HOH . 
H 4 HOH B 14 714 9 HOH HOH . 
H 4 HOH B 15 715 32 HOH HOH . 
H 4 HOH B 16 716 98 HOH HOH . 
H 4 HOH B 17 717 153 HOH HOH . 
H 4 HOH B 18 718 54 HOH HOH . 
H 4 HOH B 19 719 41 HOH HOH . 
H 4 HOH B 20 720 29 HOH HOH . 
H 4 HOH B 21 721 180 HOH HOH . 
H 4 HOH B 22 722 95 HOH HOH . 
H 4 HOH B 23 723 31 HOH HOH . 
H 4 HOH B 24 724 136 HOH HOH . 
H 4 HOH B 25 725 15 HOH HOH . 
H 4 HOH B 26 726 144 HOH HOH . 
H 4 HOH B 27 727 55 HOH HOH . 
H 4 HOH B 28 728 150 HOH HOH . 
H 4 HOH B 29 729 79 HOH HOH . 
H 4 HOH B 30 730 2 HOH HOH . 
H 4 HOH B 31 731 53 HOH HOH . 
H 4 HOH B 32 732 176 HOH HOH . 
H 4 HOH B 33 733 13 HOH HOH . 
H 4 HOH B 34 734 123 HOH HOH . 
H 4 HOH B 35 735 70 HOH HOH . 
H 4 HOH B 36 736 97 HOH HOH . 
H 4 HOH B 37 737 40 HOH HOH . 
H 4 HOH B 38 738 50 HOH HOH . 
H 4 HOH B 39 739 82 HOH HOH . 
H 4 HOH B 40 740 64 HOH HOH . 
H 4 HOH B 41 741 38 HOH HOH . 
H 4 HOH B 42 742 45 HOH HOH . 
H 4 HOH B 43 743 43 HOH HOH . 
H 4 HOH B 44 744 47 HOH HOH . 
H 4 HOH B 45 745 76 HOH HOH . 
H 4 HOH B 46 746 133 HOH HOH . 
H 4 HOH B 47 747 24 HOH HOH . 
H 4 HOH B 48 748 118 HOH HOH . 
H 4 HOH B 49 749 11 HOH HOH . 
H 4 HOH B 50 750 173 HOH HOH . 
H 4 HOH B 51 751 71 HOH HOH . 
H 4 HOH B 52 752 128 HOH HOH . 
H 4 HOH B 53 753 74 HOH HOH . 
H 4 HOH B 54 754 77 HOH HOH . 
H 4 HOH B 55 755 103 HOH HOH . 
H 4 HOH B 56 756 127 HOH HOH . 
H 4 HOH B 57 757 36 HOH HOH . 
H 4 HOH B 58 758 33 HOH HOH . 
H 4 HOH B 59 759 132 HOH HOH . 
H 4 HOH B 60 760 165 HOH HOH . 
H 4 HOH B 61 761 184 HOH HOH . 
H 4 HOH B 62 762 115 HOH HOH . 
H 4 HOH B 63 763 166 HOH HOH . 
H 4 HOH B 64 764 85 HOH HOH . 
H 4 HOH B 65 765 141 HOH HOH . 
H 4 HOH B 66 766 5 HOH HOH . 
H 4 HOH B 67 767 58 HOH HOH . 
H 4 HOH B 68 768 121 HOH HOH . 
H 4 HOH B 69 769 159 HOH HOH . 
H 4 HOH B 70 770 16 HOH HOH . 
H 4 HOH B 71 771 73 HOH HOH . 
H 4 HOH B 72 772 93 HOH HOH . 
H 4 HOH B 73 773 152 HOH HOH . 
H 4 HOH B 74 774 156 HOH HOH . 
H 4 HOH B 75 775 89 HOH HOH . 
H 4 HOH B 76 776 162 HOH HOH . 
H 4 HOH B 77 777 122 HOH HOH . 
H 4 HOH B 78 778 138 HOH HOH . 
H 4 HOH B 79 779 143 HOH HOH . 
H 4 HOH B 80 780 101 HOH HOH . 
H 4 HOH B 81 781 130 HOH HOH . 
H 4 HOH B 82 782 88 HOH HOH . 
H 4 HOH B 83 783 86 HOH HOH . 
H 4 HOH B 84 784 63 HOH HOH . 
H 4 HOH B 85 785 179 HOH HOH . 
H 4 HOH B 86 786 178 HOH HOH . 
H 4 HOH B 87 787 154 HOH HOH . 
H 4 HOH B 88 788 161 HOH HOH . 
H 4 HOH B 89 789 106 HOH HOH . 
H 4 HOH B 90 790 107 HOH HOH . 
H 4 HOH B 91 791 120 HOH HOH . 
H 4 HOH B 92 792 28 HOH HOH . 
H 4 HOH B 93 793 186 HOH HOH . 
H 4 HOH B 94 794 187 HOH HOH . 
I 4 HOH C 1 701 69 HOH HOH . 
J 4 HOH D 1 701 189 HOH HOH . 
J 4 HOH D 2 702 104 HOH HOH . 
J 4 HOH D 3 703 83 HOH HOH . 
J 4 HOH D 4 704 125 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 5C7 . . . E 3 -17.078 -28.091 -5.273 1 31.21 ? C01 5C7 601 A 1 
HETATM 2 C C02 5C7 . . . E 3 -18.249 -27.349 -5.738 1 30.66 ? C02 5C7 601 A 1 
HETATM 3 C C03 5C7 . . . E 3 -18.858 -26.348 -4.931 1 32.61 ? C03 5C7 601 A 1 
HETATM 4 C C04 5C7 . . . E 3 -20.343 -25.933 -5.128 1 32.02 ? C04 5C7 601 A 1 
HETATM 5 C C05 5C7 . . . E 3 -21.354 -26.88 -5.115 1 36.67 ? C05 5C7 601 A 1 
HETATM 6 C C06 5C7 . . . E 3 -22.644 -26.5 -5.286 1 37.96 ? C06 5C7 601 A 1 
HETATM 7 C C07 5C7 . . . E 3 -22.955 -25.15 -5.462 1 35.85 ? C07 5C7 601 A 1 
HETATM 8 O O08 5C7 . . . E 3 -24.268 -24.766 -5.631 1 37.27 ? O08 5C7 601 A 1 
HETATM 9 C C09 5C7 . . . E 3 -21.942 -24.197 -5.466 1 34.37 ? C09 5C7 601 A 1 
HETATM 10 C C10 5C7 . . . E 3 -20.663 -24.573 -5.301 1 33.11 ? C10 5C7 601 A 1 
HETATM 11 C C11 5C7 . . . E 3 -18.169 -25.773 -3.682 1 35.1 ? C11 5C7 601 A 1 
HETATM 12 C C12 5C7 . . . E 3 -16.905 -25.242 -3.727 1 33.35 ? C12 5C7 601 A 1 
HETATM 13 C C13 5C7 . . . E 3 -16.29 -24.709 -2.531 1 32.12 ? C13 5C7 601 A 1 
HETATM 14 C C14 5C7 . . . E 3 -16.965 -24.706 -1.373 1 35.79 ? C14 5C7 601 A 1 
HETATM 15 O O15 5C7 . . . E 3 -16.408 -24.214 -0.292 1 36.07 ? O15 5C7 601 A 1 
HETATM 16 C C16 5C7 . . . E 3 -18.246 -25.224 -1.322 1 37.36 ? C16 5C7 601 A 1 
HETATM 17 C C17 5C7 . . . E 3 -18.853 -25.763 -2.503 1 39.18 ? C17 5C7 601 A 1 
HETATM 18 C C18 5C7 . . . E 3 -18.997 -28 -6.91 1 32.77 ? C18 5C7 601 A 1 
HETATM 19 C C19 5C7 . . . E 3 -19.199 -29.423 -6.889 1 33.54 ? C19 5C7 601 A 1 
HETATM 20 C C20 5C7 . . . E 3 -19.84 -30.038 -7.888 1 30.31 ? C20 5C7 601 A 1 
HETATM 21 C C21 5C7 . . . E 3 -20.345 -29.264 -9.036 1 32.3 ? C21 5C7 601 A 1 
HETATM 22 C C22 5C7 . . . E 3 -21.121 -29.987 -10.25 1 41.98 ? C22 5C7 601 A 1 
HETATM 23 C C23 5C7 . . . E 3 -21.474 -31.427 -9.917 1 42.98 ? C23 5C7 601 A 1 
HETATM 24 C C24 5C7 . . . E 3 -20.288 -30.018 -11.42 1 45.25 ? C24 5C7 601 A 1 
HETATM 25 C C25 5C7 . . . E 3 -22.355 -29.247 -10.526 1 37.65 ? C25 5C7 601 A 1 
HETATM 26 C C26 5C7 . . . E 3 -20.138 -27.878 -9.053 1 35.9 ? C26 5C7 601 A 1 
HETATM 27 C C27 5C7 . . . E 3 -19.474 -27.245 -8.007 1 37.08 ? C27 5C7 601 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           288 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           27 
#