data_5DKK # _model_server_result.job_id hw7ZKEzAI50x01E9Sp8X4g _model_server_result.datetime_utc '2024-11-08 09:04:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dkk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 5DKK # _exptl.entry_id 5DKK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 59.044 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5DKK _cell.length_a 64.37 _cell.length_b 69.21 _cell.length_c 74.6 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DKK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,H 1 1 B,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # _chem_comp.formula 'C2 H3 O2 -1' _chem_comp.formula_weight 59.044 _chem_comp.id ACT _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACT doub 1 n n C OXT ACT sing 2 n n C CH3 ACT sing 3 n n CH3 H1 ACT sing 4 n n CH3 H2 ACT sing 5 n n CH3 H3 ACT sing 6 n n # _atom_sites.entry_id 5DKK _atom_sites.fract_transf_matrix[1][1] 0.015535 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014449 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013405 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN A 1 401 500 FMN FMN . D 3 ACT A 1 402 1 ACT ACT . E 3 ACT A 1 403 4 ACT ACT . F 4 EDO A 1 404 1 EDO EDO . G 2 FMN B 1 500 500 FMN FMN . H 5 HOH A 1 501 60 HOH HOH . H 5 HOH A 2 502 34 HOH HOH . H 5 HOH A 3 503 3 HOH HOH . H 5 HOH A 4 504 73 HOH HOH . H 5 HOH A 5 505 47 HOH HOH . H 5 HOH A 6 506 63 HOH HOH . H 5 HOH A 7 507 42 HOH HOH . H 5 HOH A 8 508 36 HOH HOH . H 5 HOH A 9 509 76 HOH HOH . H 5 HOH A 10 510 11 HOH HOH . H 5 HOH A 11 511 44 HOH HOH . H 5 HOH A 12 512 59 HOH HOH . H 5 HOH A 13 513 32 HOH HOH . H 5 HOH A 14 514 8 HOH HOH . H 5 HOH A 15 515 21 HOH HOH . H 5 HOH A 16 516 40 HOH HOH . H 5 HOH A 17 517 80 HOH HOH . H 5 HOH A 18 518 66 HOH HOH . H 5 HOH A 19 519 10 HOH HOH . H 5 HOH A 20 520 61 HOH HOH . H 5 HOH A 21 521 33 HOH HOH . H 5 HOH A 22 522 22 HOH HOH . H 5 HOH A 23 523 53 HOH HOH . H 5 HOH A 24 524 65 HOH HOH . H 5 HOH A 25 525 16 HOH HOH . I 5 HOH B 1 601 35 HOH HOH . I 5 HOH B 2 602 28 HOH HOH . I 5 HOH B 3 603 9 HOH HOH . I 5 HOH B 4 604 18 HOH HOH . I 5 HOH B 5 605 20 HOH HOH . I 5 HOH B 6 606 69 HOH HOH . I 5 HOH B 7 607 77 HOH HOH . I 5 HOH B 8 608 58 HOH HOH . I 5 HOH B 9 609 24 HOH HOH . I 5 HOH B 10 610 75 HOH HOH . I 5 HOH B 11 611 41 HOH HOH . I 5 HOH B 12 612 17 HOH HOH . I 5 HOH B 13 613 6 HOH HOH . I 5 HOH B 14 614 26 HOH HOH . I 5 HOH B 15 615 78 HOH HOH . I 5 HOH B 16 616 43 HOH HOH . I 5 HOH B 17 617 39 HOH HOH . I 5 HOH B 18 618 62 HOH HOH . I 5 HOH B 19 619 5 HOH HOH . I 5 HOH B 20 620 45 HOH HOH . I 5 HOH B 21 621 54 HOH HOH . I 5 HOH B 22 622 4 HOH HOH . I 5 HOH B 23 623 46 HOH HOH . I 5 HOH B 24 624 79 HOH HOH . I 5 HOH B 25 625 56 HOH HOH . I 5 HOH B 26 626 52 HOH HOH . I 5 HOH B 27 627 67 HOH HOH . I 5 HOH B 28 628 15 HOH HOH . I 5 HOH B 29 629 14 HOH HOH . I 5 HOH B 30 630 72 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACT . . . D 3 2.06 16.642 2.307 1 38.35 ? C ACT 402 A 1 HETATM 2 O O ACT . . . D 3 2.662 15.83 1.572 1 40.04 ? O ACT 402 A 1 HETATM 3 O OXT ACT . . . D 3 0.943 16.254 2.688 1 38.15 ? OXT ACT 402 A 1 HETATM 4 C CH3 ACT . . . D 3 2.63 17.978 2.702 1 33.85 ? CH3 ACT 402 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #