data_5DKR # _model_server_result.job_id 8dqfAShhyqxsww1uVtQZ_Q _model_server_result.datetime_utc '2024-10-18 23:25:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dkr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":101}' # _entry.id 5DKR # _exptl.entry_id 5DKR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5DKR _cell.length_a 46.745 _cell.length_b 47.443 _cell.length_c 90.343 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DKR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O SER 19 A SER 18 1_555 C CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc2 A O GLU 22 A GLU 21 1_555 C CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc3 A O ASP 24 A ASP 23 1_555 C CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc4 A O LYS 27 A LYS 26 1_555 C CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc5 A OE1 GLU 32 A GLU 31 1_555 C CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc6 A OE2 GLU 32 A GLU 31 1_555 C CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? metalc ? metalc7 A OD1 ASP 62 A ASP 61 1_555 D CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc8 A OD1 ASP 64 A ASP 63 1_555 D CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc9 A O GLY 65 A GLY 64 1_555 H CA CA . B CA 103 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc10 A OD1 ASP 66 A ASP 65 1_555 D CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc11 A O GLU 68 A GLU 67 1_555 D CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc12 A OE1 GLU 73 A GLU 72 1_555 D CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc13 A OE2 GLU 73 A GLU 72 1_555 D CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.581 ? metalc ? metalc14 C CA CA . A CA 101 1_555 I O HOH . A HOH 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc15 D CA CA . A CA 102 1_555 I O HOH . A HOH 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc16 I O HOH . A HOH 240 3_445 H CA CA . B CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc17 B O SER 19 B SER 18 1_555 F CA CA . B CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc18 B O GLU 22 B GLU 21 1_555 F CA CA . B CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc19 B O ASP 24 B ASP 23 1_555 F CA CA . B CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc20 B O LYS 27 B LYS 26 1_555 F CA CA . B CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc21 B OE1 GLU 32 B GLU 31 1_555 F CA CA . B CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc22 B OE2 GLU 32 B GLU 31 1_555 F CA CA . B CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.581 ? metalc ? metalc23 B OD1 ASP 62 B ASP 61 1_555 G CA CA . B CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc24 B OD1 ASP 64 B ASP 63 1_555 G CA CA . B CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc25 B OD2 ASP 64 B ASP 63 1_555 H CA CA . B CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc26 B OD1 ASP 66 B ASP 65 1_555 G CA CA . B CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc27 B O GLU 68 B GLU 67 1_555 G CA CA . B CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc28 B OD2 ASP 70 B ASP 69 1_555 H CA CA . B CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc29 B OE1 GLU 73 B GLU 72 1_555 G CA CA . B CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc30 B OE2 GLU 73 B GLU 72 1_555 G CA CA . B CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? metalc ? metalc31 F CA CA . B CA 101 1_555 J O HOH . B HOH 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc32 G CA CA . B CA 102 1_555 J O HOH . B HOH 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc33 H CA CA . B CA 103 1_555 J O HOH . B HOH 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc34 H CA CA . B CA 103 1_555 J O HOH . B HOH 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc35 H CA CA . B CA 103 1_555 J O HOH . B HOH 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5DKR _atom_sites.fract_transf_matrix[1][1] 0.021393 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021078 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011069 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 101 100 CA CA . D 2 CA A 1 102 101 CA CA . E 3 5CZ A 1 103 1 5CZ INH . F 2 CA B 1 101 100 CA CA . G 2 CA B 1 102 101 CA CA . H 2 CA B 1 103 1 CA CA . I 4 HOH A 1 201 51 HOH HOH . I 4 HOH A 2 202 59 HOH HOH . I 4 HOH A 3 203 63 HOH HOH . I 4 HOH A 4 204 58 HOH HOH . I 4 HOH A 5 205 25 HOH HOH . I 4 HOH A 6 206 99 HOH HOH . I 4 HOH A 7 207 166 HOH HOH . I 4 HOH A 8 208 149 HOH HOH . I 4 HOH A 9 209 125 HOH HOH . I 4 HOH A 10 210 8 HOH HOH . I 4 HOH A 11 211 38 HOH HOH . I 4 HOH A 12 212 19 HOH HOH . I 4 HOH A 13 213 135 HOH HOH . I 4 HOH A 14 214 163 HOH HOH . I 4 HOH A 15 215 137 HOH HOH . I 4 HOH A 16 216 155 HOH HOH . I 4 HOH A 17 217 154 HOH HOH . I 4 HOH A 18 218 3 HOH HOH . I 4 HOH A 19 219 21 HOH HOH . I 4 HOH A 20 220 105 HOH HOH . I 4 HOH A 21 221 20 HOH HOH . I 4 HOH A 22 222 28 HOH HOH . I 4 HOH A 23 223 66 HOH HOH . I 4 HOH A 24 224 4 HOH HOH . I 4 HOH A 25 225 180 HOH HOH . I 4 HOH A 26 226 144 HOH HOH . I 4 HOH A 27 227 27 HOH HOH . I 4 HOH A 28 228 30 HOH HOH . I 4 HOH A 29 229 16 HOH HOH . I 4 HOH A 30 230 39 HOH HOH . I 4 HOH A 31 231 174 HOH HOH . I 4 HOH A 32 232 33 HOH HOH . I 4 HOH A 33 233 77 HOH HOH . I 4 HOH A 34 234 13 HOH HOH . I 4 HOH A 35 235 89 HOH HOH . I 4 HOH A 36 236 34 HOH HOH . I 4 HOH A 37 237 88 HOH HOH . I 4 HOH A 38 238 73 HOH HOH . I 4 HOH A 39 239 35 HOH HOH . I 4 HOH A 40 240 53 HOH HOH . I 4 HOH A 41 241 93 HOH HOH . I 4 HOH A 42 242 67 HOH HOH . I 4 HOH A 43 243 153 HOH HOH . I 4 HOH A 44 244 176 HOH HOH . I 4 HOH A 45 245 64 HOH HOH . I 4 HOH A 46 246 22 HOH HOH . I 4 HOH A 47 247 62 HOH HOH . I 4 HOH A 48 248 106 HOH HOH . I 4 HOH A 49 249 151 HOH HOH . I 4 HOH A 50 250 45 HOH HOH . I 4 HOH A 51 251 114 HOH HOH . I 4 HOH A 52 252 65 HOH HOH . I 4 HOH A 53 253 112 HOH HOH . I 4 HOH A 54 254 84 HOH HOH . I 4 HOH A 55 255 172 HOH HOH . I 4 HOH A 56 256 150 HOH HOH . I 4 HOH A 57 257 121 HOH HOH . I 4 HOH A 58 258 120 HOH HOH . I 4 HOH A 59 259 50 HOH HOH . I 4 HOH A 60 260 171 HOH HOH . I 4 HOH A 61 261 118 HOH HOH . I 4 HOH A 62 262 122 HOH HOH . I 4 HOH A 63 263 130 HOH HOH . I 4 HOH A 64 264 103 HOH HOH . I 4 HOH A 65 265 117 HOH HOH . I 4 HOH A 66 266 95 HOH HOH . I 4 HOH A 67 267 83 HOH HOH . I 4 HOH A 68 268 68 HOH HOH . I 4 HOH A 69 269 60 HOH HOH . I 4 HOH A 70 270 126 HOH HOH . I 4 HOH A 71 271 131 HOH HOH . I 4 HOH A 72 272 179 HOH HOH . I 4 HOH A 73 273 111 HOH HOH . I 4 HOH A 74 274 91 HOH HOH . I 4 HOH A 75 275 156 HOH HOH . I 4 HOH A 76 276 170 HOH HOH . J 4 HOH B 1 201 142 HOH HOH . J 4 HOH B 2 202 116 HOH HOH . J 4 HOH B 3 203 54 HOH HOH . J 4 HOH B 4 204 94 HOH HOH . J 4 HOH B 5 205 96 HOH HOH . J 4 HOH B 6 206 7 HOH HOH . J 4 HOH B 7 207 104 HOH HOH . J 4 HOH B 8 208 173 HOH HOH . J 4 HOH B 9 209 10 HOH HOH . J 4 HOH B 10 210 109 HOH HOH . J 4 HOH B 11 211 2 HOH HOH . J 4 HOH B 12 212 139 HOH HOH . J 4 HOH B 13 213 76 HOH HOH . J 4 HOH B 14 214 15 HOH HOH . J 4 HOH B 15 215 36 HOH HOH . J 4 HOH B 16 216 134 HOH HOH . J 4 HOH B 17 217 6 HOH HOH . J 4 HOH B 18 218 123 HOH HOH . J 4 HOH B 19 219 1 HOH HOH . J 4 HOH B 20 220 11 HOH HOH . J 4 HOH B 21 221 115 HOH HOH . J 4 HOH B 22 222 71 HOH HOH . J 4 HOH B 23 223 18 HOH HOH . J 4 HOH B 24 224 49 HOH HOH . J 4 HOH B 25 225 81 HOH HOH . J 4 HOH B 26 226 178 HOH HOH . J 4 HOH B 27 227 181 HOH HOH . J 4 HOH B 28 228 37 HOH HOH . J 4 HOH B 29 229 146 HOH HOH . J 4 HOH B 30 230 12 HOH HOH . J 4 HOH B 31 231 92 HOH HOH . J 4 HOH B 32 232 43 HOH HOH . J 4 HOH B 33 233 24 HOH HOH . J 4 HOH B 34 234 70 HOH HOH . J 4 HOH B 35 235 26 HOH HOH . J 4 HOH B 36 236 107 HOH HOH . J 4 HOH B 37 237 46 HOH HOH . J 4 HOH B 38 238 56 HOH HOH . J 4 HOH B 39 239 29 HOH HOH . J 4 HOH B 40 240 78 HOH HOH . J 4 HOH B 41 241 40 HOH HOH . J 4 HOH B 42 242 177 HOH HOH . J 4 HOH B 43 243 182 HOH HOH . J 4 HOH B 44 244 9 HOH HOH . J 4 HOH B 45 245 75 HOH HOH . J 4 HOH B 46 246 5 HOH HOH . J 4 HOH B 47 247 23 HOH HOH . J 4 HOH B 48 248 80 HOH HOH . J 4 HOH B 49 249 41 HOH HOH . J 4 HOH B 50 250 119 HOH HOH . J 4 HOH B 51 251 162 HOH HOH . J 4 HOH B 52 252 85 HOH HOH . J 4 HOH B 53 253 47 HOH HOH . J 4 HOH B 54 254 168 HOH HOH . J 4 HOH B 55 255 52 HOH HOH . J 4 HOH B 56 256 141 HOH HOH . J 4 HOH B 57 257 113 HOH HOH . J 4 HOH B 58 258 31 HOH HOH . J 4 HOH B 59 259 152 HOH HOH . J 4 HOH B 60 260 48 HOH HOH . J 4 HOH B 61 261 157 HOH HOH . J 4 HOH B 62 262 133 HOH HOH . J 4 HOH B 63 263 42 HOH HOH . J 4 HOH B 64 264 143 HOH HOH . J 4 HOH B 65 265 32 HOH HOH . J 4 HOH B 66 266 14 HOH HOH . J 4 HOH B 67 267 108 HOH HOH . J 4 HOH B 68 268 87 HOH HOH . J 4 HOH B 69 269 132 HOH HOH . J 4 HOH B 70 270 102 HOH HOH . J 4 HOH B 71 271 138 HOH HOH . J 4 HOH B 72 272 72 HOH HOH . J 4 HOH B 73 273 136 HOH HOH . J 4 HOH B 74 274 161 HOH HOH . J 4 HOH B 75 275 100 HOH HOH . J 4 HOH B 76 276 86 HOH HOH . J 4 HOH B 77 277 55 HOH HOH . J 4 HOH B 78 278 69 HOH HOH . J 4 HOH B 79 279 129 HOH HOH . J 4 HOH B 80 280 128 HOH HOH . J 4 HOH B 81 281 61 HOH HOH . J 4 HOH B 82 282 79 HOH HOH . J 4 HOH B 83 283 145 HOH HOH . J 4 HOH B 84 284 127 HOH HOH . J 4 HOH B 85 285 169 HOH HOH . J 4 HOH B 86 286 44 HOH HOH . J 4 HOH B 87 287 110 HOH HOH . J 4 HOH B 88 288 97 HOH HOH . J 4 HOH B 89 289 82 HOH HOH . J 4 HOH B 90 290 101 HOH HOH . J 4 HOH B 91 291 147 HOH HOH . J 4 HOH B 92 292 164 HOH HOH . J 4 HOH B 93 293 148 HOH HOH . J 4 HOH B 94 294 124 HOH HOH . J 4 HOH B 95 295 165 HOH HOH . J 4 HOH B 96 296 167 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x -11.867 _atom_site.Cartn_y 3.032 _atom_site.Cartn_z 13.174 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 24.11 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 101 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 341 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #