data_5DKS # _model_server_result.job_id SRvwjQp1d5HI91OQyzrPuA _model_server_result.datetime_utc '2024-10-12 16:31:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dks # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":601}' # _entry.id 5DKS # _exptl.entry_id 5DKS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 457.562 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "4,4'-{2-[3-(naphthalen-1-ylamino)phenyl]but-1-ene-1,1-diyl}diphenol" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.83 _cell.angle_gamma 90 _cell.entry_id 5DKS _cell.length_a 54.54 _cell.length_b 82.75 _cell.length_c 58.15 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DKS _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C32 H27 N O2' _chem_comp.formula_weight 457.562 _chem_comp.id 5C6 _chem_comp.mon_nstd_flag . _chem_comp.name "4,4'-{2-[3-(naphthalen-1-ylamino)phenyl]but-1-ene-1,1-diyl}diphenol" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O09 C08 5C6 sing 1 n n C07 C08 5C6 doub 2 n y C07 C06 5C6 sing 3 n y C08 C10 5C6 sing 4 n y C06 C05 5C6 doub 5 n y C10 C11 5C6 doub 6 n y C05 C11 5C6 sing 7 n y C05 C04 5C6 sing 8 n n C04 C12 5C6 sing 9 n n C04 C03 5C6 doub 10 n n C13 C12 5C6 doub 11 n y C13 C14 5C6 sing 12 n y C12 C18 5C6 sing 13 n y C02 C03 5C6 sing 14 n n C02 C01 5C6 sing 15 n n C14 C15 5C6 doub 16 n y C18 C17 5C6 doub 17 n y C15 C17 5C6 sing 18 n y C15 O16 5C6 sing 19 n n C03 C19 5C6 sing 20 n n C31 C30 5C6 doub 21 n y C31 C32 5C6 sing 22 n y C30 C29 5C6 sing 23 n y C32 C33 5C6 doub 24 n y C29 C28 5C6 doub 25 n y C29 C34 5C6 sing 26 n y C28 C27 5C6 sing 27 n y C19 C35 5C6 doub 28 n y C19 C20 5C6 sing 29 n y C33 C34 5C6 sing 30 n y C35 C23 5C6 sing 31 n y C34 C25 5C6 doub 32 n y C27 C26 5C6 doub 33 n y C20 C21 5C6 doub 34 n y C25 C26 5C6 sing 35 n y C25 N24 5C6 sing 36 n n C23 N24 5C6 sing 37 n n C23 C22 5C6 doub 38 n y C21 C22 5C6 sing 39 n y C01 H1 5C6 sing 40 n n C01 H2 5C6 sing 41 n n C01 H3 5C6 sing 42 n n C02 H4 5C6 sing 43 n n C02 H5 5C6 sing 44 n n C06 H8 5C6 sing 45 n n C07 H9 5C6 sing 46 n n O09 H10 5C6 sing 47 n n C10 H11 5C6 sing 48 n n C11 H12 5C6 sing 49 n n C13 H13 5C6 sing 50 n n C14 H14 5C6 sing 51 n n O16 H15 5C6 sing 52 n n C17 H16 5C6 sing 53 n n C18 H17 5C6 sing 54 n n C20 H18 5C6 sing 55 n n C21 H19 5C6 sing 56 n n C22 H20 5C6 sing 57 n n N24 H21 5C6 sing 58 n n C26 H22 5C6 sing 59 n n C27 H23 5C6 sing 60 n n C28 H24 5C6 sing 61 n n C30 H25 5C6 sing 62 n n C31 H26 5C6 sing 63 n n C32 H27 5C6 sing 64 n n C33 H28 5C6 sing 65 n n C35 H29 5C6 sing 66 n n # _atom_sites.entry_id 5DKS _atom_sites.fract_transf_matrix[1][1] 0.018335 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006976 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012085 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0184 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 5C6 A 1 601 1 5C6 UNK . F 3 5C6 B 1 601 1 5C6 UNK . G 4 HOH A 1 701 61 HOH HOH . G 4 HOH A 2 702 35 HOH HOH . G 4 HOH A 3 703 73 HOH HOH . G 4 HOH A 4 704 58 HOH HOH . G 4 HOH A 5 705 40 HOH HOH . G 4 HOH A 6 706 2 HOH HOH . G 4 HOH A 7 707 26 HOH HOH . G 4 HOH A 8 708 44 HOH HOH . G 4 HOH A 9 709 3 HOH HOH . G 4 HOH A 10 710 13 HOH HOH . G 4 HOH A 11 711 10 HOH HOH . G 4 HOH A 12 712 22 HOH HOH . G 4 HOH A 13 713 70 HOH HOH . G 4 HOH A 14 714 48 HOH HOH . G 4 HOH A 15 715 52 HOH HOH . G 4 HOH A 16 716 20 HOH HOH . G 4 HOH A 17 717 8 HOH HOH . G 4 HOH A 18 718 38 HOH HOH . G 4 HOH A 19 719 5 HOH HOH . G 4 HOH A 20 720 29 HOH HOH . G 4 HOH A 21 721 17 HOH HOH . G 4 HOH A 22 722 39 HOH HOH . G 4 HOH A 23 723 36 HOH HOH . G 4 HOH A 24 724 27 HOH HOH . G 4 HOH A 25 725 67 HOH HOH . G 4 HOH A 26 726 45 HOH HOH . G 4 HOH A 27 727 53 HOH HOH . G 4 HOH A 28 728 19 HOH HOH . G 4 HOH A 29 729 64 HOH HOH . G 4 HOH A 30 730 14 HOH HOH . G 4 HOH A 31 731 16 HOH HOH . G 4 HOH A 32 732 6 HOH HOH . G 4 HOH A 33 733 34 HOH HOH . G 4 HOH A 34 734 72 HOH HOH . G 4 HOH A 35 735 74 HOH HOH . G 4 HOH A 36 736 68 HOH HOH . G 4 HOH A 37 737 46 HOH HOH . G 4 HOH A 38 738 51 HOH HOH . G 4 HOH A 39 739 30 HOH HOH . G 4 HOH A 40 740 63 HOH HOH . G 4 HOH A 41 741 42 HOH HOH . G 4 HOH A 42 742 31 HOH HOH . G 4 HOH A 43 743 60 HOH HOH . G 4 HOH A 44 744 66 HOH HOH . G 4 HOH A 45 745 71 HOH HOH . H 4 HOH B 1 701 37 HOH HOH . H 4 HOH B 2 702 55 HOH HOH . H 4 HOH B 3 703 41 HOH HOH . H 4 HOH B 4 704 57 HOH HOH . H 4 HOH B 5 705 1 HOH HOH . H 4 HOH B 6 706 25 HOH HOH . H 4 HOH B 7 707 62 HOH HOH . H 4 HOH B 8 708 47 HOH HOH . H 4 HOH B 9 709 9 HOH HOH . H 4 HOH B 10 710 7 HOH HOH . H 4 HOH B 11 711 24 HOH HOH . H 4 HOH B 12 712 75 HOH HOH . H 4 HOH B 13 713 28 HOH HOH . H 4 HOH B 14 714 32 HOH HOH . H 4 HOH B 15 715 11 HOH HOH . H 4 HOH B 16 716 18 HOH HOH . H 4 HOH B 17 717 59 HOH HOH . H 4 HOH B 18 718 33 HOH HOH . H 4 HOH B 19 719 12 HOH HOH . H 4 HOH B 20 720 23 HOH HOH . H 4 HOH B 21 721 15 HOH HOH . H 4 HOH B 22 722 21 HOH HOH . H 4 HOH B 23 723 50 HOH HOH . H 4 HOH B 24 724 56 HOH HOH . H 4 HOH B 25 725 49 HOH HOH . H 4 HOH B 26 726 65 HOH HOH . H 4 HOH B 27 727 69 HOH HOH . H 4 HOH B 28 728 4 HOH HOH . H 4 HOH B 29 729 54 HOH HOH . I 4 HOH D 1 701 43 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 5C6 . . . F 3 10.577 8.052 30.736 0.85 42.96 ? C01 5C6 601 B 1 HETATM 2 C C02 5C6 . . . F 3 11.112 7.592 32.051 0.85 41.51 ? C02 5C6 601 B 1 HETATM 3 C C03 5C6 . . . F 3 11.426 6.135 32.182 0.85 39.79 ? C03 5C6 601 B 1 HETATM 4 C C04 5C6 . . . F 3 10.627 5.269 32.91 0.85 35.91 ? C04 5C6 601 B 1 HETATM 5 C C05 5C6 . . . F 3 9.216 5.594 33.311 0.85 35.04 ? C05 5C6 601 B 1 HETATM 6 C C06 5C6 . . . F 3 8.856 5.597 34.653 0.85 34.35 ? C06 5C6 601 B 1 HETATM 7 C C07 5C6 . . . F 3 7.548 5.888 35.022 0.85 32.33 ? C07 5C6 601 B 1 HETATM 8 C C08 5C6 . . . F 3 6.599 6.174 34.05 0.85 32.14 ? C08 5C6 601 B 1 HETATM 9 O O09 5C6 . . . F 3 5.302 6.463 34.416 0.85 31.5 ? O09 5C6 601 B 1 HETATM 10 C C10 5C6 . . . F 3 6.955 6.169 32.709 0.85 33.52 ? C10 5C6 601 B 1 HETATM 11 C C11 5C6 . . . F 3 8.259 5.869 32.339 0.85 34.39 ? C11 5C6 601 B 1 HETATM 12 C C12 5C6 . . . F 3 11.173 3.971 33.388 0.85 33.11 ? C12 5C6 601 B 1 HETATM 13 C C13 5C6 . . . F 3 12.219 3.979 34.298 0.85 32.21 ? C13 5C6 601 B 1 HETATM 14 C C14 5C6 . . . F 3 12.745 2.782 34.751 0.85 31.31 ? C14 5C6 601 B 1 HETATM 15 C C15 5C6 . . . F 3 12.22 1.582 34.296 0.85 31.25 ? C15 5C6 601 B 1 HETATM 16 O O16 5C6 . . . F 3 12.743 0.395 34.752 0.85 32.2 ? O16 5C6 601 B 1 HETATM 17 C C17 5C6 . . . F 3 11.172 1.575 33.385 0.85 31.77 ? C17 5C6 601 B 1 HETATM 18 C C18 5C6 . . . F 3 10.647 2.773 32.926 0.85 31.37 ? C18 5C6 601 B 1 HETATM 19 C C19 5C6 . . . F 3 12.588 5.659 31.347 0.85 43.32 ? C19 5C6 601 B 1 HETATM 20 C C20 5C6 . . . F 3 12.552 4.483 30.609 0.85 44.42 ? C20 5C6 601 B 1 HETATM 21 C C21 5C6 . . . F 3 13.656 4.102 29.85 0.85 45.97 ? C21 5C6 601 B 1 HETATM 22 C C22 5C6 . . . F 3 14.789 4.91 29.818 0.85 47.72 ? C22 5C6 601 B 1 HETATM 23 C C23 5C6 . . . F 3 14.839 6.091 30.547 0.85 49.21 ? C23 5C6 601 B 1 HETATM 24 N N24 5C6 . . . F 3 16.025 6.927 30.485 0.85 52.86 ? N24 5C6 601 B 1 HETATM 25 C C25 5C6 . . . F 3 16.396 8.011 31.377 0.85 58.09 ? C25 5C6 601 B 1 HETATM 26 C C26 5C6 . . . F 3 17.589 7.889 32.089 0.85 60.7 ? C26 5C6 601 B 1 HETATM 27 C C27 5C6 . . . F 3 18.018 8.894 32.962 0.85 61.39 ? C27 5C6 601 B 1 HETATM 28 C C28 5C6 . . . F 3 17.259 10.047 33.115 0.85 60.32 ? C28 5C6 601 B 1 HETATM 29 C C29 5C6 . . . F 3 16.043 10.196 32.389 0.85 59.28 ? C29 5C6 601 B 1 HETATM 30 C C30 5C6 . . . F 3 15.28 11.386 32.566 0.85 59.6 ? C30 5C6 601 B 1 HETATM 31 C C31 5C6 . . . F 3 14.09 11.562 31.872 0.85 60.63 ? C31 5C6 601 B 1 HETATM 32 C C32 5C6 . . . F 3 13.642 10.574 30.998 0.85 61.49 ? C32 5C6 601 B 1 HETATM 33 C C33 5C6 . . . F 3 14.392 9.418 30.824 0.85 61.22 ? C33 5C6 601 B 1 HETATM 34 C C34 5C6 . . . F 3 15.615 9.214 31.535 0.85 59.59 ? C34 5C6 601 B 1 HETATM 35 C C35 5C6 . . . F 3 13.728 6.451 31.304 0.85 46.44 ? C35 5C6 601 B 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 35 #