data_5DL5
#
_model_server_result.job_id            giKx4OrbDFQ0KMKJ8k6dbw 
_model_server_result.datetime_utc      '2025-03-30 04:33:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5dl5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":504}' 
#
_entry.id    5DL5 
#
_exptl.entry_id    5DL5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              94.971 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHATE ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5DL5 
_cell.length_a            134.073 
_cell.length_b            134.073 
_cell.length_c            54.41 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5DL5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        168 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 6' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'O4 P -3' 
_chem_comp.formula_weight    94.971 
_chem_comp.id                PO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1 PO4 doub 301 n n 
P O2 PO4 sing 302 n n 
P O3 PO4 sing 303 n n 
P O4 PO4 sing 304 n n 
#
_atom_sites.entry_id                     5DL5 
_atom_sites.fract_transf_matrix[1][1]    0.007459 
_atom_sites.fract_transf_matrix[1][2]    0.004306 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008612 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018379 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 C8E A 1 501 1 C8E C8E . 
C 2 C8E A 1 502 2 C8E C8E . 
D 2 C8E A 1 503 3 C8E C8E . 
E 3 PO4 A 1 504 1 PO4 PO4 . 
F 4 HOH A 1 601 34 HOH HOH . 
F 4 HOH A 2 602 78 HOH HOH . 
F 4 HOH A 3 603 60 HOH HOH . 
F 4 HOH A 4 604 57 HOH HOH . 
F 4 HOH A 5 605 66 HOH HOH . 
F 4 HOH A 6 606 3 HOH HOH . 
F 4 HOH A 7 607 86 HOH HOH . 
F 4 HOH A 8 608 67 HOH HOH . 
F 4 HOH A 9 609 17 HOH HOH . 
F 4 HOH A 10 610 74 HOH HOH . 
F 4 HOH A 11 611 63 HOH HOH . 
F 4 HOH A 12 612 83 HOH HOH . 
F 4 HOH A 13 613 33 HOH HOH . 
F 4 HOH A 14 614 42 HOH HOH . 
F 4 HOH A 15 615 10 HOH HOH . 
F 4 HOH A 16 616 89 HOH HOH . 
F 4 HOH A 17 617 81 HOH HOH . 
F 4 HOH A 18 618 71 HOH HOH . 
F 4 HOH A 19 619 19 HOH HOH . 
F 4 HOH A 20 620 29 HOH HOH . 
F 4 HOH A 21 621 16 HOH HOH . 
F 4 HOH A 22 622 72 HOH HOH . 
F 4 HOH A 23 623 88 HOH HOH . 
F 4 HOH A 24 624 5 HOH HOH . 
F 4 HOH A 25 625 36 HOH HOH . 
F 4 HOH A 26 626 28 HOH HOH . 
F 4 HOH A 27 627 90 HOH HOH . 
F 4 HOH A 28 628 37 HOH HOH . 
F 4 HOH A 29 629 12 HOH HOH . 
F 4 HOH A 30 630 40 HOH HOH . 
F 4 HOH A 31 631 85 HOH HOH . 
F 4 HOH A 32 632 4 HOH HOH . 
F 4 HOH A 33 633 38 HOH HOH . 
F 4 HOH A 34 634 87 HOH HOH . 
F 4 HOH A 35 635 1 HOH HOH . 
F 4 HOH A 36 636 39 HOH HOH . 
F 4 HOH A 37 637 58 HOH HOH . 
F 4 HOH A 38 638 49 HOH HOH . 
F 4 HOH A 39 639 30 HOH HOH . 
F 4 HOH A 40 640 44 HOH HOH . 
F 4 HOH A 41 641 8 HOH HOH . 
F 4 HOH A 42 642 20 HOH HOH . 
F 4 HOH A 43 643 54 HOH HOH . 
F 4 HOH A 44 644 6 HOH HOH . 
F 4 HOH A 45 645 75 HOH HOH . 
F 4 HOH A 46 646 23 HOH HOH . 
F 4 HOH A 47 647 18 HOH HOH . 
F 4 HOH A 48 648 21 HOH HOH . 
F 4 HOH A 49 649 27 HOH HOH . 
F 4 HOH A 50 650 64 HOH HOH . 
F 4 HOH A 51 651 2 HOH HOH . 
F 4 HOH A 52 652 59 HOH HOH . 
F 4 HOH A 53 653 22 HOH HOH . 
F 4 HOH A 54 654 25 HOH HOH . 
F 4 HOH A 55 655 79 HOH HOH . 
F 4 HOH A 56 656 80 HOH HOH . 
F 4 HOH A 57 657 35 HOH HOH . 
F 4 HOH A 58 658 15 HOH HOH . 
F 4 HOH A 59 659 43 HOH HOH . 
F 4 HOH A 60 660 73 HOH HOH . 
F 4 HOH A 61 661 84 HOH HOH . 
F 4 HOH A 62 662 68 HOH HOH . 
F 4 HOH A 63 663 7 HOH HOH . 
F 4 HOH A 64 664 61 HOH HOH . 
F 4 HOH A 65 665 14 HOH HOH . 
F 4 HOH A 66 666 82 HOH HOH . 
F 4 HOH A 67 667 77 HOH HOH . 
F 4 HOH A 68 668 31 HOH HOH . 
F 4 HOH A 69 669 55 HOH HOH . 
F 4 HOH A 70 670 62 HOH HOH . 
F 4 HOH A 71 671 70 HOH HOH . 
F 4 HOH A 72 672 46 HOH HOH . 
F 4 HOH A 73 673 69 HOH HOH . 
F 4 HOH A 74 674 76 HOH HOH . 
F 4 HOH A 75 675 53 HOH HOH . 
F 4 HOH A 76 676 51 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P PO4 . . . E 3 -30.521 -45.257 -12.256 1 62.26 ? P PO4 504 A 1 
HETATM 2 O O1 PO4 . . . E 3 -30.578 -46.626 -12.93 1 52.02 ? O1 PO4 504 A 1 
HETATM 3 O O2 PO4 . . . E 3 -31.81 -44.442 -12.475 1 61.25 ? O2 PO4 504 A 1 
HETATM 4 O O3 PO4 . . . E 3 -29.373 -44.455 -12.886 1 44.79 ? O3 PO4 504 A 1 
HETATM 5 O O4 PO4 . . . E 3 -30.327 -45.441 -10.744 1 51.05 ? O4 PO4 504 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           253 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           5 
#