data_5DL9
#
_model_server_result.job_id            Z8ZOcXqKV3P2BrO_-aFa6g 
_model_server_result.datetime_utc      '2024-11-04 23:01:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5dl9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":205}' 
#
_entry.id    5DL9 
#
_exptl.entry_id    5DL9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5DL9 
_cell.length_a            79.459 
_cell.length_b            79.459 
_cell.length_c            37.042 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5DL9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
? 3 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? 
disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 89 n n 
C1 C2 EDO sing 90 n n 
C1 H11 EDO sing 91 n n 
C1 H12 EDO sing 92 n n 
O1 HO1 EDO sing 93 n n 
C2 O2 EDO sing 94 n n 
C2 H21 EDO sing 95 n n 
C2 H22 EDO sing 96 n n 
O2 HO2 EDO sing 97 n n 
#
_atom_sites.entry_id                     5DL9 
_atom_sites.fract_transf_matrix[1][1]    0.012585 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012585 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.026996 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 IOD A 1 201 1 IOD IOD . 
C 2 IOD A 1 202 2 IOD IOD . 
D 2 IOD A 1 203 3 IOD IOD . 
E 2 IOD A 1 204 4 IOD IOD . 
F 3 EDO A 1 205 1 EDO EDO . 
G 3 EDO A 1 206 2 EDO EDO . 
H 3 EDO A 1 207 3 EDO EDO . 
I 3 EDO A 1 208 4 EDO EDO . 
J 3 EDO A 1 209 5 EDO EDO . 
K 3 EDO A 1 210 6 EDO EDO . 
L 3 EDO A 1 211 7 EDO EDO . 
M 3 EDO A 1 212 8 EDO EDO . 
N 3 EDO A 1 213 9 EDO EDO . 
O 4 ACT A 1 214 1 ACT ACT . 
P 5 HOH A 1 301 81 HOH HOH . 
P 5 HOH A 2 302 2 HOH HOH . 
P 5 HOH A 3 303 28 HOH HOH . 
P 5 HOH A 4 304 1 HOH HOH . 
P 5 HOH A 5 305 3 HOH HOH . 
P 5 HOH A 6 306 55 HOH HOH . 
P 5 HOH A 7 307 9 HOH HOH . 
P 5 HOH A 8 308 43 HOH HOH . 
P 5 HOH A 9 309 102 HOH HOH . 
P 5 HOH A 10 310 65 HOH HOH . 
P 5 HOH A 11 311 96 HOH HOH . 
P 5 HOH A 12 312 18 HOH HOH . 
P 5 HOH A 13 313 115 HOH HOH . 
P 5 HOH A 14 314 30 HOH HOH . 
P 5 HOH A 15 315 19 HOH HOH . 
P 5 HOH A 16 316 24 HOH HOH . 
P 5 HOH A 17 317 37 HOH HOH . 
P 5 HOH A 18 318 5 HOH HOH . 
P 5 HOH A 19 319 26 HOH HOH . 
P 5 HOH A 20 320 33 HOH HOH . 
P 5 HOH A 21 321 27 HOH HOH . 
P 5 HOH A 22 322 54 HOH HOH . 
P 5 HOH A 23 323 21 HOH HOH . 
P 5 HOH A 24 324 93 HOH HOH . 
P 5 HOH A 25 325 88 HOH HOH . 
P 5 HOH A 26 326 103 HOH HOH . 
P 5 HOH A 27 327 45 HOH HOH . 
P 5 HOH A 28 328 61 HOH HOH . 
P 5 HOH A 29 329 12 HOH HOH . 
P 5 HOH A 30 330 40 HOH HOH . 
P 5 HOH A 31 331 52 HOH HOH . 
P 5 HOH A 32 332 17 HOH HOH . 
P 5 HOH A 33 333 50 HOH HOH . 
P 5 HOH A 34 334 29 HOH HOH . 
P 5 HOH A 35 335 67 HOH HOH . 
P 5 HOH A 36 336 49 HOH HOH . 
P 5 HOH A 37 337 120 HOH HOH . 
P 5 HOH A 38 338 14 HOH HOH . 
P 5 HOH A 39 339 83 HOH HOH . 
P 5 HOH A 40 340 97 HOH HOH . 
P 5 HOH A 41 341 99 HOH HOH . 
P 5 HOH A 42 342 13 HOH HOH . 
P 5 HOH A 43 343 11 HOH HOH . 
P 5 HOH A 44 344 32 HOH HOH . 
P 5 HOH A 45 345 71 HOH HOH . 
P 5 HOH A 46 346 10 HOH HOH . 
P 5 HOH A 47 347 56 HOH HOH . 
P 5 HOH A 48 348 124 HOH HOH . 
P 5 HOH A 49 349 41 HOH HOH . 
P 5 HOH A 50 350 44 HOH HOH . 
P 5 HOH A 51 351 79 HOH HOH . 
P 5 HOH A 52 352 92 HOH HOH . 
P 5 HOH A 53 353 22 HOH HOH . 
P 5 HOH A 54 354 62 HOH HOH . 
P 5 HOH A 55 355 85 HOH HOH . 
P 5 HOH A 56 356 107 HOH HOH . 
P 5 HOH A 57 357 31 HOH HOH . 
P 5 HOH A 58 358 100 HOH HOH . 
P 5 HOH A 59 359 78 HOH HOH . 
P 5 HOH A 60 360 112 HOH HOH . 
P 5 HOH A 61 361 94 HOH HOH . 
P 5 HOH A 62 362 57 HOH HOH . 
P 5 HOH A 63 363 58 HOH HOH . 
P 5 HOH A 64 364 73 HOH HOH . 
P 5 HOH A 65 365 95 HOH HOH . 
P 5 HOH A 66 366 38 HOH HOH . 
P 5 HOH A 67 367 119 HOH HOH . 
P 5 HOH A 68 368 63 HOH HOH . 
P 5 HOH A 69 369 89 HOH HOH . 
P 5 HOH A 70 370 69 HOH HOH . 
P 5 HOH A 71 371 68 HOH HOH . 
P 5 HOH A 72 372 105 HOH HOH . 
P 5 HOH A 73 373 25 HOH HOH . 
P 5 HOH A 74 374 64 HOH HOH . 
P 5 HOH A 75 375 39 HOH HOH . 
P 5 HOH A 76 376 23 HOH HOH . 
P 5 HOH A 77 377 91 HOH HOH . 
P 5 HOH A 78 378 98 HOH HOH . 
P 5 HOH A 79 379 121 HOH HOH . 
P 5 HOH A 80 380 101 HOH HOH . 
P 5 HOH A 81 381 82 HOH HOH . 
P 5 HOH A 82 382 104 HOH HOH . 
P 5 HOH A 83 383 47 HOH HOH . 
P 5 HOH A 84 384 127 HOH HOH . 
P 5 HOH A 85 385 106 HOH HOH . 
P 5 HOH A 86 386 60 HOH HOH . 
P 5 HOH A 87 387 114 HOH HOH . 
P 5 HOH A 88 388 125 HOH HOH . 
P 5 HOH A 89 389 123 HOH HOH . 
P 5 HOH A 90 390 126 HOH HOH . 
P 5 HOH A 91 391 87 HOH HOH . 
P 5 HOH A 92 392 86 HOH HOH . 
P 5 HOH A 93 393 110 HOH HOH . 
P 5 HOH A 94 394 122 HOH HOH . 
P 5 HOH A 95 395 118 HOH HOH . 
P 5 HOH A 96 396 72 HOH HOH . 
P 5 HOH A 97 397 117 HOH HOH . 
P 5 HOH A 98 398 76 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . F 3 4.872 46.255 21.907 1 17.49 ? C1 EDO 205 A 1 
HETATM 2 O O1 EDO . . . F 3 3.903 45.918 20.892 1 18.16 ? O1 EDO 205 A 1 
HETATM 3 C C2 EDO . . . F 3 5.702 47.43 21.429 1 17.04 ? C2 EDO 205 A 1 
HETATM 4 O O2 EDO . . . F 3 6.351 47.038 20.223 1 15.15 ? O2 EDO 205 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           252 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           4 
#