data_5DLH # _model_server_result.job_id lDEx53sRCRD8p7BYLuSq4Q _model_server_result.datetime_utc '2025-03-06 09:52:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dlh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 5DLH # _exptl.entry_id 5DLH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5DLH _cell.length_a 93.794 _cell.length_b 93.794 _cell.length_c 132.243 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DLH _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 57 A ASP 57 1_555 F CA CA . A CA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc2 A OD2 ASP 57 A ASP 57 1_555 F CA CA . A CA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc3 A OD1 ASP 59 A ASP 59 1_555 F CA CA . A CA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc4 A O GLN 61 A GLN 61 1_555 F CA CA . A CA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc5 A OD2 ASP 138 A ASP 138 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? metalc ? metalc6 A NE2 HIS 142 A HIS 142 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc7 A NE2 HIS 146 A HIS 146 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc8 A OE1 GLU 166 A GLU 166 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc9 A OE2 GLU 166 A GLU 166 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc10 A OE1 GLU 177 A GLU 177 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc11 A OE2 GLU 177 A GLU 177 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.008 ? metalc ? metalc12 A OE2 GLU 177 A GLU 177 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc13 A O ASN 183 A ASN 183 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc14 A OD1 ASP 185 A ASP 185 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? metalc ? metalc15 A OD2 ASP 185 A ASP 185 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc16 A O GLU 187 A GLU 187 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc17 A OE1 GLU 190 A GLU 190 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? metalc ? metalc18 A OE2 GLU 190 A GLU 190 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc19 A OE2 GLU 190 A GLU 190 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc20 A O TYR 193 A TYR 193 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc21 A O THR 194 A THR 194 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc22 A OG1 THR 194 A THR 194 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc23 A O ILE 197 A ILE 197 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc24 A OD1 ASP 200 A ASP 200 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc25 B ZN ZN . A ZN 401 1_555 G O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? metalc ? metalc26 B ZN ZN . A ZN 401 1_555 G O HOH . A HOH 568 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc27 C CA CA . A CA 402 1_555 G O HOH . A HOH 518 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? metalc ? metalc28 D CA CA . A CA 403 1_555 G O HOH . A HOH 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc29 D CA CA . A CA 403 1_555 G O HOH . A HOH 524 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc30 E CA CA . A CA 404 1_555 G O HOH . A HOH 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc31 F CA CA . A CA 405 1_555 G O HOH . A HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc32 F CA CA . A CA 405 1_555 G O HOH . A HOH 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc33 F CA CA . A CA 405 1_555 G O HOH . A HOH 540 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5DLH _atom_sites.fract_transf_matrix[1][1] 0.010662 _atom_sites.fract_transf_matrix[1][2] 0.006156 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012311 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007562 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 401 401 ZN ZN . C 3 CA A 1 402 402 CA CA . D 3 CA A 1 403 403 CA CA . E 3 CA A 1 404 404 CA CA . F 3 CA A 1 405 405 CA CA . G 4 HOH A 1 501 694 HOH HOH . G 4 HOH A 2 502 619 HOH HOH . G 4 HOH A 3 503 646 HOH HOH . G 4 HOH A 4 504 685 HOH HOH . G 4 HOH A 5 505 620 HOH HOH . G 4 HOH A 6 506 625 HOH HOH . G 4 HOH A 7 507 657 HOH HOH . G 4 HOH A 8 508 546 HOH HOH . G 4 HOH A 9 509 616 HOH HOH . G 4 HOH A 10 510 615 HOH HOH . G 4 HOH A 11 511 655 HOH HOH . G 4 HOH A 12 512 641 HOH HOH . G 4 HOH A 13 513 628 HOH HOH . G 4 HOH A 14 514 503 HOH HOH . G 4 HOH A 15 515 635 HOH HOH . G 4 HOH A 16 516 518 HOH HOH . G 4 HOH A 17 517 624 HOH HOH . G 4 HOH A 18 518 629 HOH HOH . G 4 HOH A 19 519 524 HOH HOH . G 4 HOH A 20 520 618 HOH HOH . G 4 HOH A 21 521 611 HOH HOH . G 4 HOH A 22 522 516 HOH HOH . G 4 HOH A 23 523 567 HOH HOH . G 4 HOH A 24 524 623 HOH HOH . G 4 HOH A 25 525 634 HOH HOH . G 4 HOH A 26 526 633 HOH HOH . G 4 HOH A 27 527 553 HOH HOH . G 4 HOH A 28 528 631 HOH HOH . G 4 HOH A 29 529 677 HOH HOH . G 4 HOH A 30 530 650 HOH HOH . G 4 HOH A 31 531 639 HOH HOH . G 4 HOH A 32 532 661 HOH HOH . G 4 HOH A 33 533 612 HOH HOH . G 4 HOH A 34 534 703 HOH HOH . G 4 HOH A 35 535 638 HOH HOH . G 4 HOH A 36 536 643 HOH HOH . G 4 HOH A 37 537 669 HOH HOH . G 4 HOH A 38 538 647 HOH HOH . G 4 HOH A 39 539 743 HOH HOH . G 4 HOH A 40 540 573 HOH HOH . G 4 HOH A 41 541 626 HOH HOH . G 4 HOH A 42 542 584 HOH HOH . G 4 HOH A 43 543 763 HOH HOH . G 4 HOH A 44 544 613 HOH HOH . G 4 HOH A 45 545 704 HOH HOH . G 4 HOH A 46 546 640 HOH HOH . G 4 HOH A 47 547 644 HOH HOH . G 4 HOH A 48 548 537 HOH HOH . G 4 HOH A 49 549 719 HOH HOH . G 4 HOH A 50 550 617 HOH HOH . G 4 HOH A 51 551 531 HOH HOH . G 4 HOH A 52 552 560 HOH HOH . G 4 HOH A 53 553 627 HOH HOH . G 4 HOH A 54 554 561 HOH HOH . G 4 HOH A 55 555 819 HOH HOH . G 4 HOH A 56 556 822 HOH HOH . G 4 HOH A 57 557 706 HOH HOH . G 4 HOH A 58 558 741 HOH HOH . G 4 HOH A 59 559 710 HOH HOH . G 4 HOH A 60 560 536 HOH HOH . G 4 HOH A 61 561 602 HOH HOH . G 4 HOH A 62 562 648 HOH HOH . G 4 HOH A 63 563 556 HOH HOH . G 4 HOH A 64 564 654 HOH HOH . G 4 HOH A 65 565 578 HOH HOH . G 4 HOH A 66 566 758 HOH HOH . G 4 HOH A 67 567 533 HOH HOH . G 4 HOH A 68 568 637 HOH HOH . G 4 HOH A 69 569 700 HOH HOH . G 4 HOH A 70 570 718 HOH HOH . G 4 HOH A 71 571 538 HOH HOH . G 4 HOH A 72 572 817 HOH HOH . G 4 HOH A 73 573 649 HOH HOH . G 4 HOH A 74 574 592 HOH HOH . G 4 HOH A 75 575 783 HOH HOH . G 4 HOH A 76 576 610 HOH HOH . G 4 HOH A 77 577 590 HOH HOH . G 4 HOH A 78 578 733 HOH HOH . G 4 HOH A 79 579 753 HOH HOH . G 4 HOH A 80 580 747 HOH HOH . G 4 HOH A 81 581 748 HOH HOH . G 4 HOH A 82 582 801 HOH HOH . G 4 HOH A 83 583 800 HOH HOH . G 4 HOH A 84 584 820 HOH HOH . G 4 HOH A 85 585 562 HOH HOH . G 4 HOH A 86 586 591 HOH HOH . G 4 HOH A 87 587 691 HOH HOH . G 4 HOH A 88 588 762 HOH HOH . G 4 HOH A 89 589 545 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x 32.367 _atom_site.Cartn_y 35.434 _atom_site.Cartn_z 81.917 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 39.99 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 405 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 440 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #