data_5DLI
#
_model_server_result.job_id            ZCwl71wD1GZ60ArWuyoIFg 
_model_server_result.datetime_utc      '2024-10-13 02:31:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5dli 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":101}' 
#
_entry.id    5DLI 
#
_exptl.entry_id    5DLI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5DLI 
_cell.length_a            33.09 
_cell.length_b            44.39 
_cell.length_c            71.43 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5DLI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             I 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 10 n n 
C1 C2 GOL sing 11 n n 
C1 H11 GOL sing 12 n n 
C1 H12 GOL sing 13 n n 
O1 HO1 GOL sing 14 n n 
C2 O2 GOL sing 15 n n 
C2 C3 GOL sing 16 n n 
C2 H2 GOL sing 17 n n 
O2 HO2 GOL sing 18 n n 
C3 O3 GOL sing 19 n n 
C3 H31 GOL sing 20 n n 
C3 H32 GOL sing 21 n n 
O3 HO3 GOL sing 22 n n 
#
_atom_sites.entry_id                     5DLI 
_atom_sites.fract_transf_matrix[1][1]    0.030221 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.022528 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 GOL B 1 101 3 GOL GOL . 
J 3 IOD D 1 101 1 IOD IOD . 
K 3 IOD D 1 102 2 IOD IOD . 
L 4 HOH A 1 101 57 HOH HOH . 
L 4 HOH A 2 102 2 HOH HOH . 
L 4 HOH A 3 103 28 HOH HOH . 
L 4 HOH A 4 104 56 HOH HOH . 
L 4 HOH A 5 105 24 HOH HOH . 
M 4 HOH B 1 201 12 HOH HOH . 
M 4 HOH B 2 202 25 HOH HOH . 
M 4 HOH B 3 203 32 HOH HOH . 
M 4 HOH B 4 204 40 HOH HOH . 
N 4 HOH C 1 101 34 HOH HOH . 
N 4 HOH C 2 102 13 HOH HOH . 
N 4 HOH C 3 103 46 HOH HOH . 
N 4 HOH C 4 104 11 HOH HOH . 
N 4 HOH C 5 105 29 HOH HOH . 
N 4 HOH C 6 106 8 HOH HOH . 
N 4 HOH C 7 107 55 HOH HOH . 
O 4 HOH D 1 201 17 HOH HOH . 
O 4 HOH D 2 202 7 HOH HOH . 
O 4 HOH D 3 203 14 HOH HOH . 
O 4 HOH D 4 204 31 HOH HOH . 
O 4 HOH D 5 205 22 HOH HOH . 
O 4 HOH D 6 206 37 HOH HOH . 
P 4 HOH E 1 101 10 HOH HOH . 
P 4 HOH E 2 102 39 HOH HOH . 
P 4 HOH E 3 103 20 HOH HOH . 
P 4 HOH E 4 104 30 HOH HOH . 
P 4 HOH E 5 105 36 HOH HOH . 
P 4 HOH E 6 106 35 HOH HOH . 
Q 4 HOH F 1 101 15 HOH HOH . 
Q 4 HOH F 2 102 27 HOH HOH . 
Q 4 HOH F 3 103 48 HOH HOH . 
Q 4 HOH F 4 104 19 HOH HOH . 
Q 4 HOH F 5 105 26 HOH HOH . 
Q 4 HOH F 6 106 42 HOH HOH . 
Q 4 HOH F 7 107 51 HOH HOH . 
Q 4 HOH F 8 108 50 HOH HOH . 
Q 4 HOH F 9 109 53 HOH HOH . 
R 4 HOH G 1 101 4 HOH HOH . 
R 4 HOH G 2 102 33 HOH HOH . 
R 4 HOH G 3 103 21 HOH HOH . 
R 4 HOH G 4 104 54 HOH HOH . 
S 4 HOH H 1 101 45 HOH HOH . 
S 4 HOH H 2 102 47 HOH HOH . 
S 4 HOH H 3 103 9 HOH HOH . 
S 4 HOH H 4 104 38 HOH HOH . 
S 4 HOH H 5 105 16 HOH HOH . 
S 4 HOH H 6 106 44 HOH HOH . 
S 4 HOH H 7 107 43 HOH HOH . 
S 4 HOH H 8 108 18 HOH HOH . 
S 4 HOH H 9 109 41 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . I 2 16.333 9.926 16.599 1 52.19 ? C1 GOL 101 B 1 
HETATM 2 O O1 GOL . . . I 2 17.696 9.557 16.426 1 51.5 ? O1 GOL 101 B 1 
HETATM 3 C C2 GOL . . . I 2 15.413 9.019 15.816 1 50.99 ? C2 GOL 101 B 1 
HETATM 4 O O2 GOL . . . I 2 14.296 9.773 15.343 1 53.64 ? O2 GOL 101 B 1 
HETATM 5 C C3 GOL . . . I 2 14.907 7.886 16.677 1 47.12 ? C3 GOL 101 B 1 
HETATM 6 O O3 GOL . . . I 2 14.112 6.973 15.924 1 42.73 ? O3 GOL 101 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           6 
#