data_5DLI # _model_server_result.job_id XnkLv2BYTbxrnGKB4a_0fA _model_server_result.datetime_utc '2024-10-13 02:23:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dli # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":101}' # _entry.id 5DLI # _exptl.entry_id 5DLI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 126.904 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IODIDE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5DLI _cell.length_a 33.09 _cell.length_b 44.39 _cell.length_c 71.43 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DLI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 J N N ? 3 K N N # _chem_comp.formula 'I -1' _chem_comp.formula_weight 126.904 _chem_comp.id IOD _chem_comp.mon_nstd_flag . _chem_comp.name 'IODIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5DLI _atom_sites.fract_transf_matrix[1][1] 0.030221 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022528 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 GOL B 1 101 3 GOL GOL . J 3 IOD D 1 101 1 IOD IOD . K 3 IOD D 1 102 2 IOD IOD . L 4 HOH A 1 101 57 HOH HOH . L 4 HOH A 2 102 2 HOH HOH . L 4 HOH A 3 103 28 HOH HOH . L 4 HOH A 4 104 56 HOH HOH . L 4 HOH A 5 105 24 HOH HOH . M 4 HOH B 1 201 12 HOH HOH . M 4 HOH B 2 202 25 HOH HOH . M 4 HOH B 3 203 32 HOH HOH . M 4 HOH B 4 204 40 HOH HOH . N 4 HOH C 1 101 34 HOH HOH . N 4 HOH C 2 102 13 HOH HOH . N 4 HOH C 3 103 46 HOH HOH . N 4 HOH C 4 104 11 HOH HOH . N 4 HOH C 5 105 29 HOH HOH . N 4 HOH C 6 106 8 HOH HOH . N 4 HOH C 7 107 55 HOH HOH . O 4 HOH D 1 201 17 HOH HOH . O 4 HOH D 2 202 7 HOH HOH . O 4 HOH D 3 203 14 HOH HOH . O 4 HOH D 4 204 31 HOH HOH . O 4 HOH D 5 205 22 HOH HOH . O 4 HOH D 6 206 37 HOH HOH . P 4 HOH E 1 101 10 HOH HOH . P 4 HOH E 2 102 39 HOH HOH . P 4 HOH E 3 103 20 HOH HOH . P 4 HOH E 4 104 30 HOH HOH . P 4 HOH E 5 105 36 HOH HOH . P 4 HOH E 6 106 35 HOH HOH . Q 4 HOH F 1 101 15 HOH HOH . Q 4 HOH F 2 102 27 HOH HOH . Q 4 HOH F 3 103 48 HOH HOH . Q 4 HOH F 4 104 19 HOH HOH . Q 4 HOH F 5 105 26 HOH HOH . Q 4 HOH F 6 106 42 HOH HOH . Q 4 HOH F 7 107 51 HOH HOH . Q 4 HOH F 8 108 50 HOH HOH . Q 4 HOH F 9 109 53 HOH HOH . R 4 HOH G 1 101 4 HOH HOH . R 4 HOH G 2 102 33 HOH HOH . R 4 HOH G 3 103 21 HOH HOH . R 4 HOH G 4 104 54 HOH HOH . S 4 HOH H 1 101 45 HOH HOH . S 4 HOH H 2 102 47 HOH HOH . S 4 HOH H 3 103 9 HOH HOH . S 4 HOH H 4 104 38 HOH HOH . S 4 HOH H 5 105 16 HOH HOH . S 4 HOH H 6 106 44 HOH HOH . S 4 HOH H 7 107 43 HOH HOH . S 4 HOH H 8 108 18 HOH HOH . S 4 HOH H 9 109 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 I I IOD . A . J 3 27.831 13.367 41.755 0.18 8.08 ? I IOD 101 D 1 HETATM 2 I I IOD . B . J 3 26.92 13.72 42.56 0.5 44.02 ? I IOD 101 D 1 # _model_server_stats.io_time_ms 90 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 2 #