data_5DLQ
#
_model_server_result.job_id            PzBY2vGAL3puTlC9P6yNjQ 
_model_server_result.datetime_utc      '2024-11-27 08:58:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5dlq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":217}' 
#
_entry.id    5DLQ 
#
_exptl.entry_id    5DLQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              523.18 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5DLQ 
_cell.length_a            98.616 
_cell.length_b            98.616 
_cell.length_c            726.864 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5DLQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,G,H 1 1 
D,E,F,I,J 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C C GLY 36 F GLY 49 1_555 C N 5CT 37 F 5CT 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 C C 5CT 37 F 5CT 50 1_555 C N HIS 38 F HIS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale3 F C GLY 36 E GLY 49 1_555 F N 5CT 37 E 5CT 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale4 F C 5CT 37 E 5CT 50 1_555 F N HIS 38 E HIS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
metalc ? metalc1 B OG1 THR 20 C THR 24 1_555 H MG MG . C MG 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? 
metalc ? metalc2 B OG1 THR 38 C THR 42 1_555 H MG MG . C MG 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? 
metalc ? metalc3 G O3G GTP . C GTP 217 1_555 H MG MG . C MG 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? 
metalc ? metalc4 G O2B GTP . C GTP 217 1_555 H MG MG . C MG 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? 
metalc ? metalc5 E OG1 THR 20 D THR 24 1_555 J MG MG . D MG 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? 
metalc ? metalc6 E OG1 THR 38 D THR 42 1_555 J MG MG . D MG 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? 
metalc ? metalc7 I O1G GTP . D GTP 217 1_555 J MG MG . D MG 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? 
metalc ? metalc8 I O1B GTP . D GTP 217 1_555 J MG MG . D MG 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? 
#
_chem_comp.formula           'C10 H16 N5 O14 P3' 
_chem_comp.formula_weight    523.18 
_chem_comp.id                GTP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "GUANOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GTP doub 167 n n 
PG O2G GTP sing 168 n n 
PG O3G GTP sing 169 n n 
PG O3B GTP sing 170 n n 
O2G HOG2 GTP sing 171 n n 
O3G HOG3 GTP sing 172 n n 
O3B PB GTP sing 173 n n 
PB O1B GTP doub 174 n n 
PB O2B GTP sing 175 n n 
PB O3A GTP sing 176 n n 
O2B HOB2 GTP sing 177 n n 
O3A PA GTP sing 178 n n 
PA O1A GTP doub 179 n n 
PA O2A GTP sing 180 n n 
PA O5' GTP sing 181 n n 
O2A HOA2 GTP sing 182 n n 
O5' C5' GTP sing 183 n n 
C5' C4' GTP sing 184 n n 
C5' H5' GTP sing 185 n n 
C5' "H5''" GTP sing 186 n n 
C4' O4' GTP sing 187 n n 
C4' C3' GTP sing 188 n n 
C4' H4' GTP sing 189 n n 
O4' C1' GTP sing 190 n n 
C3' O3' GTP sing 191 n n 
C3' C2' GTP sing 192 n n 
C3' H3' GTP sing 193 n n 
O3' HO3' GTP sing 194 n n 
C2' O2' GTP sing 195 n n 
C2' C1' GTP sing 196 n n 
C2' H2' GTP sing 197 n n 
O2' HO2' GTP sing 198 n n 
C1' N9 GTP sing 199 n n 
C1' H1' GTP sing 200 n n 
N9 C8 GTP sing 201 n y 
N9 C4 GTP sing 202 n y 
C8 N7 GTP doub 203 n y 
C8 H8 GTP sing 204 n n 
N7 C5 GTP sing 205 n y 
C5 C6 GTP sing 206 n n 
C5 C4 GTP doub 207 n y 
C6 O6 GTP doub 208 n n 
C6 N1 GTP sing 209 n n 
N1 C2 GTP sing 210 n n 
N1 HN1 GTP sing 211 n n 
C2 N2 GTP sing 212 n n 
C2 N3 GTP doub 213 n n 
N2 HN21 GTP sing 214 n n 
N2 HN22 GTP sing 215 n n 
N3 C4 GTP sing 216 n n 
#
_atom_sites.entry_id                     5DLQ 
_atom_sites.fract_transf_matrix[1][1]    0.01014 
_atom_sites.fract_transf_matrix[1][2]    0.005855 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011709 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.001376 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 GTP C 1 217 217 GTP GTP . 
H 5 MG C 1 218 218 MG MG . 
I 4 GTP D 1 217 217 GTP GTP . 
J 5 MG D 1 218 218 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GTP . . . G 4 25.61 42.049 823.22 1 61.05 ? PG GTP 217 C 1 
HETATM 2 O O1G GTP . . . G 4 24.674 42.721 822.291 1 59.87 ? O1G GTP 217 C 1 
HETATM 3 O O2G GTP . . . G 4 25.623 40.462 822.98 1 63.14 ? O2G GTP 217 C 1 
HETATM 4 O O3G GTP . . . G 4 25.155 42.365 824.734 1 61.17 ? O3G GTP 217 C 1 
HETATM 5 O O3B GTP . . . G 4 27.096 42.61 822.975 1 60.63 ? O3B GTP 217 C 1 
HETATM 6 P PB GTP . . . G 4 27.946 43.73 823.743 1 62.21 ? PB GTP 217 C 1 
HETATM 7 O O1B GTP . . . G 4 28.069 44.964 822.934 1 58.35 ? O1B GTP 217 C 1 
HETATM 8 O O2B GTP . . . G 4 27.22 44.107 825.134 1 59.78 ? O2B GTP 217 C 1 
HETATM 9 O O3A GTP . . . G 4 29.397 43.172 824.112 1 61.24 ? O3A GTP 217 C 1 
HETATM 10 P PA GTP . . . G 4 30.268 43.507 825.417 1 61.9 ? PA GTP 217 C 1 
HETATM 11 O O1A GTP . . . G 4 30.183 44.964 825.665 1 60.44 ? O1A GTP 217 C 1 
HETATM 12 O O2A GTP . . . G 4 29.656 42.723 826.686 1 63.25 ? O2A GTP 217 C 1 
HETATM 13 O O5' GTP . . . G 4 31.777 43.047 825.138 1 63.27 ? O5' GTP 217 C 1 
HETATM 14 C C5' GTP . . . G 4 32.054 41.784 824.534 1 64.8 ? C5' GTP 217 C 1 
HETATM 15 C C4' GTP . . . G 4 33.479 41.347 824.864 1 68.2 ? C4' GTP 217 C 1 
HETATM 16 O O4' GTP . . . G 4 34.405 42.224 824.205 1 66.1 ? O4' GTP 217 C 1 
HETATM 17 C C3' GTP . . . G 4 33.751 41.436 826.376 1 67.59 ? C3' GTP 217 C 1 
HETATM 18 O O3' GTP . . . G 4 34.57 40.337 826.778 1 70.17 ? O3' GTP 217 C 1 
HETATM 19 C C2' GTP . . . G 4 34.522 42.768 826.522 1 66.64 ? C2' GTP 217 C 1 
HETATM 20 O O2' GTP . . . G 4 35.402 42.734 827.648 1 68.31 ? O2' GTP 217 C 1 
HETATM 21 C C1' GTP . . . G 4 35.302 42.795 825.182 1 66.66 ? C1' GTP 217 C 1 
HETATM 22 N N9 GTP . . . G 4 35.608 44.156 824.746 1 65.19 ? N9 GTP 217 C 1 
HETATM 23 C C8 GTP . . . G 4 34.742 45.209 824.694 1 63.19 ? C8 GTP 217 C 1 
HETATM 24 N N7 GTP . . . G 4 35.362 46.258 824.241 1 62.65 ? N7 GTP 217 C 1 
HETATM 25 C C5 GTP . . . G 4 36.651 45.94 823.969 1 64.24 ? C5 GTP 217 C 1 
HETATM 26 C C6 GTP . . . G 4 37.76 46.658 823.47 1 64.78 ? C6 GTP 217 C 1 
HETATM 27 O O6 GTP . . . G 4 37.659 47.838 823.179 1 63.64 ? O6 GTP 217 C 1 
HETATM 28 N N1 GTP . . . G 4 38.933 46.001 823.322 1 66.85 ? N1 GTP 217 C 1 
HETATM 29 C C2 GTP . . . G 4 39.03 44.681 823.649 1 74.83 ? C2 GTP 217 C 1 
HETATM 30 N N2 GTP . . . G 4 40.231 44.038 823.488 1 85.03 ? N2 GTP 217 C 1 
HETATM 31 N N3 GTP . . . G 4 38.006 44.001 824.114 1 81.7 ? N3 GTP 217 C 1 
HETATM 32 C C4 GTP . . . G 4 36.818 44.588 824.286 1 68.99 ? C4 GTP 217 C 1 
#
_model_server_stats.io_time_ms              54 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    42 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           32 
#