data_5DLQ
#
_model_server_result.job_id            QozlGlhQjcTkZNVivFLeVw 
_model_server_result.datetime_utc      '2024-10-28 02:27:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5dlq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":217}' 
#
_entry.id    5DLQ 
#
_exptl.entry_id    5DLQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              523.18 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5DLQ 
_cell.length_a            98.616 
_cell.length_b            98.616 
_cell.length_c            726.864 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5DLQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,G,H 1 1 
D,E,F,I,J 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C C GLY 36 F GLY 49 1_555 C N 5CT 37 F 5CT 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 C C 5CT 37 F 5CT 50 1_555 C N HIS 38 F HIS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale3 F C GLY 36 E GLY 49 1_555 F N 5CT 37 E 5CT 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale4 F C 5CT 37 E 5CT 50 1_555 F N HIS 38 E HIS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
metalc ? metalc1 B OG1 THR 20 C THR 24 1_555 H MG MG . C MG 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? 
metalc ? metalc2 B OG1 THR 38 C THR 42 1_555 H MG MG . C MG 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? 
metalc ? metalc3 G O3G GTP . C GTP 217 1_555 H MG MG . C MG 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? 
metalc ? metalc4 G O2B GTP . C GTP 217 1_555 H MG MG . C MG 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? 
metalc ? metalc5 E OG1 THR 20 D THR 24 1_555 J MG MG . D MG 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? 
metalc ? metalc6 E OG1 THR 38 D THR 42 1_555 J MG MG . D MG 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? 
metalc ? metalc7 I O1G GTP . D GTP 217 1_555 J MG MG . D MG 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? 
metalc ? metalc8 I O1B GTP . D GTP 217 1_555 J MG MG . D MG 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? 
#
_chem_comp.formula           'C10 H16 N5 O14 P3' 
_chem_comp.formula_weight    523.18 
_chem_comp.id                GTP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "GUANOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GTP doub 167 n n 
PG O2G GTP sing 168 n n 
PG O3G GTP sing 169 n n 
PG O3B GTP sing 170 n n 
O2G HOG2 GTP sing 171 n n 
O3G HOG3 GTP sing 172 n n 
O3B PB GTP sing 173 n n 
PB O1B GTP doub 174 n n 
PB O2B GTP sing 175 n n 
PB O3A GTP sing 176 n n 
O2B HOB2 GTP sing 177 n n 
O3A PA GTP sing 178 n n 
PA O1A GTP doub 179 n n 
PA O2A GTP sing 180 n n 
PA O5' GTP sing 181 n n 
O2A HOA2 GTP sing 182 n n 
O5' C5' GTP sing 183 n n 
C5' C4' GTP sing 184 n n 
C5' H5' GTP sing 185 n n 
C5' "H5''" GTP sing 186 n n 
C4' O4' GTP sing 187 n n 
C4' C3' GTP sing 188 n n 
C4' H4' GTP sing 189 n n 
O4' C1' GTP sing 190 n n 
C3' O3' GTP sing 191 n n 
C3' C2' GTP sing 192 n n 
C3' H3' GTP sing 193 n n 
O3' HO3' GTP sing 194 n n 
C2' O2' GTP sing 195 n n 
C2' C1' GTP sing 196 n n 
C2' H2' GTP sing 197 n n 
O2' HO2' GTP sing 198 n n 
C1' N9 GTP sing 199 n n 
C1' H1' GTP sing 200 n n 
N9 C8 GTP sing 201 n y 
N9 C4 GTP sing 202 n y 
C8 N7 GTP doub 203 n y 
C8 H8 GTP sing 204 n n 
N7 C5 GTP sing 205 n y 
C5 C6 GTP sing 206 n n 
C5 C4 GTP doub 207 n y 
C6 O6 GTP doub 208 n n 
C6 N1 GTP sing 209 n n 
N1 C2 GTP sing 210 n n 
N1 HN1 GTP sing 211 n n 
C2 N2 GTP sing 212 n n 
C2 N3 GTP doub 213 n n 
N2 HN21 GTP sing 214 n n 
N2 HN22 GTP sing 215 n n 
N3 C4 GTP sing 216 n n 
#
_atom_sites.entry_id                     5DLQ 
_atom_sites.fract_transf_matrix[1][1]    0.01014 
_atom_sites.fract_transf_matrix[1][2]    0.005855 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011709 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.001376 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 GTP C 1 217 217 GTP GTP . 
H 5 MG C 1 218 218 MG MG . 
I 4 GTP D 1 217 217 GTP GTP . 
J 5 MG D 1 218 218 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GTP . . . I 4 48.21 23.998 748.495 1 85.23 ? PG GTP 217 D 1 
HETATM 2 O O1G GTP . . . I 4 48.801 23.482 747.237 1 93.41 ? O1G GTP 217 D 1 
HETATM 3 O O2G GTP . . . I 4 46.734 23.387 748.699 1 84.62 ? O2G GTP 217 D 1 
HETATM 4 O O3G GTP . . . I 4 48.135 25.604 748.419 1 87.92 ? O3G GTP 217 D 1 
HETATM 5 O O3B GTP . . . I 4 49.137 23.547 749.73 1 84.1 ? O3B GTP 217 D 1 
HETATM 6 P PB GTP . . . I 4 50.205 22.354 749.89 1 85.59 ? PB GTP 217 D 1 
HETATM 7 O O1B GTP . . . I 4 50.041 21.345 748.645 1 81.73 ? O1B GTP 217 D 1 
HETATM 8 O O2B GTP . . . I 4 49.971 21.616 751.156 1 81.39 ? O2B GTP 217 D 1 
HETATM 9 O O3A GTP . . . I 4 51.696 22.952 749.869 1 83.45 ? O3A GTP 217 D 1 
HETATM 10 P PA GTP . . . I 4 53.036 22.438 749.143 1 83.42 ? PA GTP 217 D 1 
HETATM 11 O O1A GTP . . . I 4 52.883 22.608 747.548 1 84.36 ? O1A GTP 217 D 1 
HETATM 12 O O2A GTP . . . I 4 53.225 21.002 749.446 1 81.58 ? O2A GTP 217 D 1 
HETATM 13 O O5' GTP . . . I 4 54.295 23.285 749.679 1 84.88 ? O5' GTP 217 D 1 
HETATM 14 C C5' GTP . . . I 4 54.45 23.622 751.059 1 85.38 ? C5' GTP 217 D 1 
HETATM 15 C C4' GTP . . . I 4 55.705 24.473 751.253 1 87.41 ? C4' GTP 217 D 1 
HETATM 16 O O4' GTP . . . I 4 56.391 24.049 752.445 1 102.76 ? O4' GTP 217 D 1 
HETATM 17 C C3' GTP . . . I 4 56.68 24.251 750.09 1 87.74 ? C3' GTP 217 D 1 
HETATM 18 O O3' GTP . . . I 4 57.583 25.351 749.992 1 90.18 ? O3' GTP 217 D 1 
HETATM 19 C C2' GTP . . . I 4 57.427 22.987 750.558 1 86.58 ? C2' GTP 217 D 1 
HETATM 20 O O2' GTP . . . I 4 58.713 22.901 749.945 1 87.65 ? O2' GTP 217 D 1 
HETATM 21 C C1' GTP . . . I 4 57.554 23.266 752.079 1 95.06 ? C1' GTP 217 D 1 
HETATM 22 N N9 GTP . . . I 4 57.57 22.008 752.829 1 91.12 ? N9 GTP 217 D 1 
HETATM 23 C C8 GTP . . . I 4 56.822 20.898 752.568 1 84.01 ? C8 GTP 217 D 1 
HETATM 24 N N7 GTP . . . I 4 57.097 19.971 753.439 1 87.09 ? N7 GTP 217 D 1 
HETATM 25 C C5 GTP . . . I 4 58.034 20.43 754.305 1 88.71 ? C5 GTP 217 D 1 
HETATM 26 C C6 GTP . . . I 4 58.697 19.878 755.425 1 86.31 ? C6 GTP 217 D 1 
HETATM 27 O O6 GTP . . . I 4 58.458 18.742 755.798 1 89.08 ? O6 GTP 217 D 1 
HETATM 28 N N1 GTP . . . I 4 59.601 20.644 756.076 1 89.77 ? N1 GTP 217 D 1 
HETATM 29 C C2 GTP . . . I 4 59.861 21.913 755.654 1 94.35 ? C2 GTP 217 D 1 
HETATM 30 N N2 GTP . . . I 4 60.784 22.665 756.334 1 104.96 ? N2 GTP 217 D 1 
HETATM 31 N N3 GTP . . . I 4 59.252 22.438 754.614 1 101.94 ? N3 GTP 217 D 1 
HETATM 32 C C4 GTP . . . I 4 58.345 21.739 753.923 1 94.98 ? C4 GTP 217 D 1 
#
_model_server_stats.io_time_ms              73 
_model_server_stats.parse_time_ms           36 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           285 
_model_server_stats.encode_time_ms          13 
_model_server_stats.element_count           32 
#