data_5DLR # _model_server_result.job_id IMrLXqJDdYtth3lqsR7Vvg _model_server_result.datetime_utc '2024-10-12 16:33:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dlr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":601}' # _entry.id 5DLR # _exptl.entry_id 5DLR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 288.34 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "4,4'-(2-phenylethene-1,1-diyl)diphenol" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.58 _cell.angle_gamma 90 _cell.entry_id 5DLR _cell.length_a 54.824 _cell.length_b 81.803 _cell.length_c 58.351 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DLR _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C20 H16 O2' _chem_comp.formula_weight 288.34 _chem_comp.id 5DJ _chem_comp.mon_nstd_flag . _chem_comp.name "4,4'-(2-phenylethene-1,1-diyl)diphenol" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C19 5DJ doub 1 n y C18 C17 5DJ sing 2 n y C19 C20 5DJ sing 3 n y C17 C16 5DJ doub 4 n y C20 C15 5DJ doub 5 n y C16 C15 5DJ sing 6 n y C15 C13 5DJ sing 7 n n C13 C14 5DJ doub 8 n n C12 C11 5DJ doub 9 n y C12 C07 5DJ sing 10 n y C14 C07 5DJ sing 11 n n C14 C02 5DJ sing 12 n n C11 C10 5DJ sing 13 n y C01 C02 5DJ doub 14 n y C01 C06 5DJ sing 15 n y C07 C08 5DJ doub 16 n y C02 C03 5DJ sing 17 n y C06 C05 5DJ doub 18 n y C10 O02 5DJ sing 19 n n C10 C09 5DJ doub 20 n y C03 C04 5DJ doub 21 n y C05 C04 5DJ sing 22 n y C05 O01 5DJ sing 23 n n C08 C09 5DJ sing 24 n y C01 H1 5DJ sing 25 n n C06 H2 5DJ sing 26 n n O01 H3 5DJ sing 27 n n C04 H4 5DJ sing 28 n n C03 H5 5DJ sing 29 n n C08 H6 5DJ sing 30 n n C09 H7 5DJ sing 31 n n O02 H8 5DJ sing 32 n n C11 H9 5DJ sing 33 n n C12 H10 5DJ sing 34 n n C13 H11 5DJ sing 35 n n C16 H12 5DJ sing 36 n n C17 H13 5DJ sing 37 n n C18 H14 5DJ sing 38 n n C19 H15 5DJ sing 39 n n C20 H16 5DJ sing 40 n n # _atom_sites.entry_id 5DLR _atom_sites.fract_transf_matrix[1][1] 0.01824 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006849 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012224 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018306 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 5DJ A 1 601 1 5DJ UNK . F 3 5DJ B 1 601 1 5DJ UNK . G 4 HOH A 1 701 106 HOH HOH . G 4 HOH A 2 702 102 HOH HOH . G 4 HOH A 3 703 57 HOH HOH . G 4 HOH A 4 704 131 HOH HOH . G 4 HOH A 5 705 19 HOH HOH . G 4 HOH A 6 706 118 HOH HOH . G 4 HOH A 7 707 109 HOH HOH . G 4 HOH A 8 708 113 HOH HOH . G 4 HOH A 9 709 41 HOH HOH . G 4 HOH A 10 710 26 HOH HOH . G 4 HOH A 11 711 67 HOH HOH . G 4 HOH A 12 712 27 HOH HOH . G 4 HOH A 13 713 38 HOH HOH . G 4 HOH A 14 714 24 HOH HOH . G 4 HOH A 15 715 31 HOH HOH . G 4 HOH A 16 716 3 HOH HOH . G 4 HOH A 17 717 23 HOH HOH . G 4 HOH A 18 718 82 HOH HOH . G 4 HOH A 19 719 36 HOH HOH . G 4 HOH A 20 720 54 HOH HOH . G 4 HOH A 21 721 52 HOH HOH . G 4 HOH A 22 722 30 HOH HOH . G 4 HOH A 23 723 51 HOH HOH . G 4 HOH A 24 724 70 HOH HOH . G 4 HOH A 25 725 7 HOH HOH . G 4 HOH A 26 726 121 HOH HOH . G 4 HOH A 27 727 20 HOH HOH . G 4 HOH A 28 728 64 HOH HOH . G 4 HOH A 29 729 35 HOH HOH . G 4 HOH A 30 730 129 HOH HOH . G 4 HOH A 31 731 69 HOH HOH . G 4 HOH A 32 732 21 HOH HOH . G 4 HOH A 33 733 22 HOH HOH . G 4 HOH A 34 734 104 HOH HOH . G 4 HOH A 35 735 39 HOH HOH . G 4 HOH A 36 736 42 HOH HOH . G 4 HOH A 37 737 29 HOH HOH . G 4 HOH A 38 738 10 HOH HOH . G 4 HOH A 39 739 49 HOH HOH . G 4 HOH A 40 740 79 HOH HOH . G 4 HOH A 41 741 97 HOH HOH . G 4 HOH A 42 742 33 HOH HOH . G 4 HOH A 43 743 99 HOH HOH . G 4 HOH A 44 744 63 HOH HOH . G 4 HOH A 45 745 53 HOH HOH . G 4 HOH A 46 746 59 HOH HOH . G 4 HOH A 47 747 74 HOH HOH . G 4 HOH A 48 748 76 HOH HOH . G 4 HOH A 49 749 114 HOH HOH . G 4 HOH A 50 750 94 HOH HOH . G 4 HOH A 51 751 130 HOH HOH . G 4 HOH A 52 752 32 HOH HOH . G 4 HOH A 53 753 85 HOH HOH . G 4 HOH A 54 754 60 HOH HOH . G 4 HOH A 55 755 128 HOH HOH . G 4 HOH A 56 756 56 HOH HOH . G 4 HOH A 57 757 92 HOH HOH . G 4 HOH A 58 758 122 HOH HOH . G 4 HOH A 59 759 93 HOH HOH . G 4 HOH A 60 760 88 HOH HOH . G 4 HOH A 61 761 90 HOH HOH . G 4 HOH A 62 762 124 HOH HOH . G 4 HOH A 63 763 125 HOH HOH . G 4 HOH A 64 764 132 HOH HOH . G 4 HOH A 65 765 119 HOH HOH . G 4 HOH A 66 766 123 HOH HOH . G 4 HOH A 67 767 37 HOH HOH . G 4 HOH A 68 768 135 HOH HOH . H 4 HOH B 1 701 137 HOH HOH . H 4 HOH B 2 702 100 HOH HOH . H 4 HOH B 3 703 43 HOH HOH . H 4 HOH B 4 704 58 HOH HOH . H 4 HOH B 5 705 101 HOH HOH . H 4 HOH B 6 706 13 HOH HOH . H 4 HOH B 7 707 61 HOH HOH . H 4 HOH B 8 708 8 HOH HOH . H 4 HOH B 9 709 44 HOH HOH . H 4 HOH B 10 710 86 HOH HOH . H 4 HOH B 11 711 103 HOH HOH . H 4 HOH B 12 712 73 HOH HOH . H 4 HOH B 13 713 112 HOH HOH . H 4 HOH B 14 714 65 HOH HOH . H 4 HOH B 15 715 55 HOH HOH . H 4 HOH B 16 716 11 HOH HOH . H 4 HOH B 17 717 28 HOH HOH . H 4 HOH B 18 718 46 HOH HOH . H 4 HOH B 19 719 126 HOH HOH . H 4 HOH B 20 720 34 HOH HOH . H 4 HOH B 21 721 2 HOH HOH . H 4 HOH B 22 722 4 HOH HOH . H 4 HOH B 23 723 18 HOH HOH . H 4 HOH B 24 724 78 HOH HOH . H 4 HOH B 25 725 6 HOH HOH . H 4 HOH B 26 726 98 HOH HOH . H 4 HOH B 27 727 111 HOH HOH . H 4 HOH B 28 728 105 HOH HOH . H 4 HOH B 29 729 117 HOH HOH . H 4 HOH B 30 730 16 HOH HOH . H 4 HOH B 31 731 5 HOH HOH . H 4 HOH B 32 732 96 HOH HOH . H 4 HOH B 33 733 12 HOH HOH . H 4 HOH B 34 734 47 HOH HOH . H 4 HOH B 35 735 48 HOH HOH . H 4 HOH B 36 736 115 HOH HOH . H 4 HOH B 37 737 1 HOH HOH . H 4 HOH B 38 738 17 HOH HOH . H 4 HOH B 39 739 89 HOH HOH . H 4 HOH B 40 740 95 HOH HOH . H 4 HOH B 41 741 84 HOH HOH . H 4 HOH B 42 742 80 HOH HOH . H 4 HOH B 43 743 50 HOH HOH . H 4 HOH B 44 744 91 HOH HOH . H 4 HOH B 45 745 15 HOH HOH . H 4 HOH B 46 746 83 HOH HOH . H 4 HOH B 47 747 40 HOH HOH . H 4 HOH B 48 748 45 HOH HOH . H 4 HOH B 49 749 25 HOH HOH . H 4 HOH B 50 750 14 HOH HOH . H 4 HOH B 51 751 71 HOH HOH . H 4 HOH B 52 752 120 HOH HOH . H 4 HOH B 53 753 81 HOH HOH . H 4 HOH B 54 754 136 HOH HOH . H 4 HOH B 55 755 108 HOH HOH . H 4 HOH B 56 756 133 HOH HOH . H 4 HOH B 57 757 107 HOH HOH . H 4 HOH B 58 758 110 HOH HOH . H 4 HOH B 59 759 77 HOH HOH . H 4 HOH B 60 760 116 HOH HOH . H 4 HOH B 61 761 75 HOH HOH . H 4 HOH B 62 762 62 HOH HOH . H 4 HOH B 63 763 87 HOH HOH . H 4 HOH B 64 764 72 HOH HOH . H 4 HOH B 65 765 9 HOH HOH . I 4 HOH C 1 701 66 HOH HOH . J 4 HOH D 1 701 68 HOH HOH . J 4 HOH D 2 702 127 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 5DJ . . . E 3 3.767 14.142 -22.218 1 34.71 ? C01 5DJ 601 A 1 HETATM 2 C C06 5DJ . . . E 3 5.101 14.481 -22.053 1 32.93 ? C06 5DJ 601 A 1 HETATM 3 C C05 5DJ . . . E 3 6.069 13.486 -22.018 1 34.46 ? C05 5DJ 601 A 1 HETATM 4 O O01 5DJ . . . E 3 7.396 13.819 -21.856 1 36.46 ? O01 5DJ 601 A 1 HETATM 5 C C04 5DJ . . . E 3 5.697 12.157 -22.149 1 34.34 ? C04 5DJ 601 A 1 HETATM 6 C C03 5DJ . . . E 3 4.36 11.821 -22.317 1 35.02 ? C03 5DJ 601 A 1 HETATM 7 C C02 5DJ . . . E 3 3.389 12.813 -22.348 1 33.61 ? C02 5DJ 601 A 1 HETATM 8 C C14 5DJ . . . E 3 1.944 12.463 -22.527 1 31.61 ? C14 5DJ 601 A 1 HETATM 9 C C07 5DJ . . . E 3 1.282 12.876 -23.804 1 31.01 ? C07 5DJ 601 A 1 HETATM 10 C C08 5DJ . . . E 3 2.032 13.002 -24.968 1 29.55 ? C08 5DJ 601 A 1 HETATM 11 C C09 5DJ . . . E 3 1.416 13.388 -26.151 1 28.27 ? C09 5DJ 601 A 1 HETATM 12 C C10 5DJ . . . E 3 0.053 13.644 -26.173 1 29.78 ? C10 5DJ 601 A 1 HETATM 13 O O02 5DJ . . . E 3 -0.553 14.024 -27.349 1 32.54 ? O02 5DJ 601 A 1 HETATM 14 C C11 5DJ . . . E 3 -0.7 13.514 -25.011 1 29.45 ? C11 5DJ 601 A 1 HETATM 15 C C12 5DJ . . . E 3 -0.084 13.134 -23.826 1 27.76 ? C12 5DJ 601 A 1 HETATM 16 C C13 5DJ . . . E 3 1.318 11.483 -21.787 1 30.02 ? C13 5DJ 601 A 1 HETATM 17 C C15 5DJ . . . E 3 1.66 11.04 -20.397 1 28.32 ? C15 5DJ 601 A 1 HETATM 18 C C16 5DJ . . . E 3 2.483 11.779 -19.558 1 27.61 ? C16 5DJ 601 A 1 HETATM 19 C C17 5DJ . . . E 3 2.773 11.326 -18.279 1 28.99 ? C17 5DJ 601 A 1 HETATM 20 C C18 5DJ . . . E 3 2.235 10.132 -17.822 1 29.45 ? C18 5DJ 601 A 1 HETATM 21 C C19 5DJ . . . E 3 1.406 9.392 -18.652 1 30.64 ? C19 5DJ 601 A 1 HETATM 22 C C20 5DJ . . . E 3 1.122 9.844 -19.933 1 31.63 ? C20 5DJ 601 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #