data_5DLX # _model_server_result.job_id 1ZbQGaxLGt3Fy2ZJPIQy7w _model_server_result.datetime_utc '2024-10-19 00:52:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dlx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5DLX # _exptl.entry_id 5DLX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 497.036 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{3-[4-(3-chlorophenyl)piperazin-1-yl]propyl}-1-(3-methyl[1,2,4]triazolo[4,3-b]pyridazin-6-yl)piperidine-4-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5DLX _cell.length_a 41.723 _cell.length_b 48.509 _cell.length_c 58.094 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DLX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C25 H33 Cl N8 O' _chem_comp.formula_weight 497.036 _chem_comp.id 5D2 _chem_comp.mon_nstd_flag . _chem_comp.name N-{3-[4-(3-chlorophenyl)piperazin-1-yl]propyl}-1-(3-methyl[1,2,4]triazolo[4,3-b]pyridazin-6-yl)piperidine-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CBI CBH 5D2 sing 1 n n NBG CBH 5D2 doub 2 n y NBG NBF 5D2 sing 3 n y CBH NBD 5D2 sing 4 n y NBF CBC 5D2 doub 5 n y NBD CBC 5D2 sing 6 n y NBD NBE 5D2 sing 7 n y CBC CBB 5D2 sing 8 n y NBE CAZ 5D2 doub 9 n y CBB CBA 5D2 doub 10 n y CAZ CBA 5D2 sing 11 n y CAZ NAW 5D2 sing 12 n n CAX NAW 5D2 sing 13 n n CAX CAY 5D2 sing 14 n n NAW CAV 5D2 sing 15 n n CAY CAS 5D2 sing 16 n n CAV CAU 5D2 sing 17 n n CAU CAS 5D2 sing 18 n n CAS CAR 5D2 sing 19 n n CAR OAT 5D2 doub 20 n n CAR NAQ 5D2 sing 21 n n NAQ CAP 5D2 sing 22 n n CAP CAO 5D2 sing 23 n n CAO CAN 5D2 sing 24 n n CAE CAD 5D2 doub 25 n y CAE CAF 5D2 sing 26 n y CAL CAM 5D2 sing 27 n n CAL NAK 5D2 sing 28 n n CAD CAC 5D2 sing 29 n y CAM NAH 5D2 sing 30 n n CAF CAA 5D2 doub 31 n y CAN NAK 5D2 sing 32 n n NAK CAJ 5D2 sing 33 n n CAC NAH 5D2 sing 34 n n CAC CAB 5D2 doub 35 n y NAH CAI 5D2 sing 36 n n CAA CAB 5D2 sing 37 n y CAA CL 5D2 sing 38 n n CAJ CAI 5D2 sing 39 n n CAB H1 5D2 sing 40 n n CAF H2 5D2 sing 41 n n CAE H3 5D2 sing 42 n n CAD H4 5D2 sing 43 n n CAM H5 5D2 sing 44 n n CAM H6 5D2 sing 45 n n CAL H7 5D2 sing 46 n n CAL H8 5D2 sing 47 n n CAI H9 5D2 sing 48 n n CAI H10 5D2 sing 49 n n CAJ H11 5D2 sing 50 n n CAJ H12 5D2 sing 51 n n CAN H14 5D2 sing 52 n n CAN H15 5D2 sing 53 n n CAO H16 5D2 sing 54 n n CAO H17 5D2 sing 55 n n CAP H18 5D2 sing 56 n n CAP H19 5D2 sing 57 n n NAQ H20 5D2 sing 58 n n CAS H21 5D2 sing 59 n n CAY H22 5D2 sing 60 n n CAY H23 5D2 sing 61 n n CAX H24 5D2 sing 62 n n CAX H25 5D2 sing 63 n n CAU H26 5D2 sing 64 n n CAU H27 5D2 sing 65 n n CAV H28 5D2 sing 66 n n CAV H29 5D2 sing 67 n n CBI H30 5D2 sing 68 n n CBI H31 5D2 sing 69 n n CBI H32 5D2 sing 70 n n CBB H33 5D2 sing 71 n n CBA H34 5D2 sing 72 n n # _atom_sites.entry_id 5DLX _atom_sites.fract_transf_matrix[1][1] 0.023968 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020615 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017213 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5D2 A 1 201 2 5D2 DRG . C 3 HOH A 1 301 46 HOH HOH . C 3 HOH A 2 302 31 HOH HOH . C 3 HOH A 3 303 4 HOH HOH . C 3 HOH A 4 304 6 HOH HOH . C 3 HOH A 5 305 3 HOH HOH . C 3 HOH A 6 306 16 HOH HOH . C 3 HOH A 7 307 10 HOH HOH . C 3 HOH A 8 308 17 HOH HOH . C 3 HOH A 9 309 7 HOH HOH . C 3 HOH A 10 310 9 HOH HOH . C 3 HOH A 11 311 13 HOH HOH . C 3 HOH A 12 312 42 HOH HOH . C 3 HOH A 13 313 27 HOH HOH . C 3 HOH A 14 314 23 HOH HOH . C 3 HOH A 15 315 14 HOH HOH . C 3 HOH A 16 316 21 HOH HOH . C 3 HOH A 17 317 12 HOH HOH . C 3 HOH A 18 318 1 HOH HOH . C 3 HOH A 19 319 19 HOH HOH . C 3 HOH A 20 320 32 HOH HOH . C 3 HOH A 21 321 44 HOH HOH . C 3 HOH A 22 322 25 HOH HOH . C 3 HOH A 23 323 22 HOH HOH . C 3 HOH A 24 324 24 HOH HOH . C 3 HOH A 25 325 30 HOH HOH . C 3 HOH A 26 326 2 HOH HOH . C 3 HOH A 27 327 11 HOH HOH . C 3 HOH A 28 328 45 HOH HOH . C 3 HOH A 29 329 36 HOH HOH . C 3 HOH A 30 330 15 HOH HOH . C 3 HOH A 31 331 8 HOH HOH . C 3 HOH A 32 332 20 HOH HOH . C 3 HOH A 33 333 5 HOH HOH . C 3 HOH A 34 334 28 HOH HOH . C 3 HOH A 35 335 40 HOH HOH . C 3 HOH A 36 336 18 HOH HOH . C 3 HOH A 37 337 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAB 5D2 . . . B 2 -6.775 7.296 3.261 1 66.39 ? CAB 5D2 201 A 1 HETATM 2 C CAA 5D2 . . . B 2 -5.691 8.147 3.004 1 69.78 ? CAA 5D2 201 A 1 HETATM 3 CL CL 5D2 . . . B 2 -4.959 8.514 4.243 1 112.17 ? CL 5D2 201 A 1 HETATM 4 C CAF 5D2 . . . B 2 -5.192 8.532 1.774 1 72.92 ? CAF 5D2 201 A 1 HETATM 5 C CAE 5D2 . . . B 2 -5.907 8.145 0.672 1 72.18 ? CAE 5D2 201 A 1 HETATM 6 C CAD 5D2 . . . B 2 -7.024 7.356 0.901 1 94.87 ? CAD 5D2 201 A 1 HETATM 7 C CAC 5D2 . . . B 2 -7.499 6.924 2.17 1 65.96 ? CAC 5D2 201 A 1 HETATM 8 N NAH 5D2 . . . B 2 -8.592 6.152 2.285 1 64.65 ? NAH 5D2 201 A 1 HETATM 9 C CAM 5D2 . . . B 2 -9.08 5.397 1.111 1 51.52 ? CAM 5D2 201 A 1 HETATM 10 C CAL 5D2 . . . B 2 -10.377 5.899 0.788 1 41.78 ? CAL 5D2 201 A 1 HETATM 11 C CAI 5D2 . . . B 2 -9.385 6.047 3.521 1 59.81 ? CAI 5D2 201 A 1 HETATM 12 C CAJ 5D2 . . . B 2 -10.81 6.284 3.21 1 58.02 ? CAJ 5D2 201 A 1 HETATM 13 N NAK 5D2 . . . B 2 -11.222 5.628 1.974 1 47.15 ? NAK 5D2 201 A 1 HETATM 14 C CAN 5D2 . . . B 2 -12.666 5.862 1.882 1 59.94 ? CAN 5D2 201 A 1 HETATM 15 C CAO 5D2 . . . B 2 -13.316 5.429 0.589 1 51.52 ? CAO 5D2 201 A 1 HETATM 16 C CAP 5D2 . . . B 2 -13.216 6.528 -0.359 1 56.97 ? CAP 5D2 201 A 1 HETATM 17 N NAQ 5D2 . . . B 2 -14.406 6.685 -1.143 1 51.07 ? NAQ 5D2 201 A 1 HETATM 18 C CAR 5D2 . . . B 2 -14.67 7.871 -1.674 1 60.52 ? CAR 5D2 201 A 1 HETATM 19 O OAT 5D2 . . . B 2 -14.033 8.926 -1.45 1 65.82 ? OAT 5D2 201 A 1 HETATM 20 C CAS 5D2 . . . B 2 -15.802 7.767 -2.667 1 46.58 ? CAS 5D2 201 A 1 HETATM 21 C CAY 5D2 . . . B 2 -15.122 7.251 -3.989 1 45.34 ? CAY 5D2 201 A 1 HETATM 22 C CAX 5D2 . . . B 2 -15.857 7.56 -5.312 1 39.34 ? CAX 5D2 201 A 1 HETATM 23 C CAU 5D2 . . . B 2 -16.535 9.121 -2.757 1 41.83 ? CAU 5D2 201 A 1 HETATM 24 C CAV 5D2 . . . B 2 -17.436 8.977 -3.977 1 41.73 ? CAV 5D2 201 A 1 HETATM 25 N NAW 5D2 . . . B 2 -16.51 8.885 -5.182 1 42.74 ? NAW 5D2 201 A 1 HETATM 26 C CAZ 5D2 . . . B 2 -16.082 9.946 -5.856 1 32.44 ? CAZ 5D2 201 A 1 HETATM 27 N NBE 5D2 . . . B 2 -15.33 9.779 -6.965 1 36.2 ? NBE 5D2 201 A 1 HETATM 28 N NBD 5D2 . . . B 2 -14.81 10.892 -7.598 1 33.01 ? NBD 5D2 201 A 1 HETATM 29 C CBH 5D2 . . . B 2 -14.033 10.988 -8.657 1 33.59 ? CBH 5D2 201 A 1 HETATM 30 C CBI 5D2 . . . B 2 -13.585 9.767 -9.435 1 37.62 ? CBI 5D2 201 A 1 HETATM 31 N NBG 5D2 . . . B 2 -13.793 12.272 -8.987 1 44.9 ? NBG 5D2 201 A 1 HETATM 32 N NBF 5D2 . . . B 2 -14.475 13.014 -8.055 1 33.87 ? NBF 5D2 201 A 1 HETATM 33 C CBC 5D2 . . . B 2 -15.086 12.152 -7.207 1 36.61 ? CBC 5D2 201 A 1 HETATM 34 C CBB 5D2 . . . B 2 -15.891 12.321 -6.127 1 29.62 ? CBB 5D2 201 A 1 HETATM 35 C CBA 5D2 . . . B 2 -16.389 11.246 -5.369 1 32.48 ? CBA 5D2 201 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 35 #