data_5DLZ # _model_server_result.job_id xPQa2tFtVPu9xkVWABifkw _model_server_result.datetime_utc '2024-10-19 00:54:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dlz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5DLZ # _exptl.entry_id 5DLZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 461.596 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{[1-(3-methylbenzyl)piperidin-4-yl]methyl}-4-[(1-methyl-2-oxo-1,2-dihydroquinolin-4-yl)oxy]butanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5DLZ _cell.length_a 37.263 _cell.length_b 44.236 _cell.length_c 78.436 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DLZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C28 H35 N3 O3' _chem_comp.formula_weight 461.596 _chem_comp.id 5D1 _chem_comp.mon_nstd_flag . _chem_comp.name N-{[1-(3-methylbenzyl)piperidin-4-yl]methyl}-4-[(1-methyl-2-oxo-1,2-dihydroquinolin-4-yl)oxy]butanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAK NAG 5D1 sing 1 n n CAF CAE 5D1 doub 2 n y CAF CAA 5D1 sing 3 n y CAE CAD 5D1 sing 4 n y NAG CAA 5D1 sing 5 n n NAG CAH 5D1 sing 6 n n CAA CAB 5D1 doub 7 n y OAL CAH 5D1 doub 8 n n CAH CAI 5D1 sing 9 n n CAD CAC 5D1 doub 10 n y CBE CBD 5D1 doub 11 n y CBE CBF 5D1 sing 12 n y CAB CAC 5D1 sing 13 n y CAB CAJ 5D1 sing 14 n n CBD CBC 5D1 sing 15 n y CAI CAJ 5D1 doub 16 n n CBF CBA 5D1 doub 17 n y CAJ OAM 5D1 sing 18 n n CBC CBG 5D1 sing 19 n n CBC CBB 5D1 doub 20 n y OAM CAN 5D1 sing 21 n n CBA CBB 5D1 sing 22 n y CBA CAZ 5D1 sing 23 n n CAV CAU 5D1 sing 24 n n CAV NAW 5D1 sing 25 n n CAZ NAW 5D1 sing 26 n n CAN CAO 5D1 sing 27 n n CAU CAT 5D1 sing 28 n n NAW CAX 5D1 sing 29 n n CAP CAO 5D1 sing 30 n n CAP CAQ 5D1 sing 31 n n CAQ OAS 5D1 doub 32 n n CAQ NAR 5D1 sing 33 n n CAT CBH 5D1 sing 34 n n CAT CAY 5D1 sing 35 n n CBH NAR 5D1 sing 36 n n CAX CAY 5D1 sing 37 n n CBG H1 5D1 sing 38 n n CBG H2 5D1 sing 39 n n CBG H3 5D1 sing 40 n n CBB H4 5D1 sing 41 n n CBD H5 5D1 sing 42 n n CBE H6 5D1 sing 43 n n CBF H7 5D1 sing 44 n n CAZ H8 5D1 sing 45 n n CAZ H9 5D1 sing 46 n n CAX H11 5D1 sing 47 n n CAX H12 5D1 sing 48 n n CAY H13 5D1 sing 49 n n CAY H14 5D1 sing 50 n n CAV H15 5D1 sing 51 n n CAV H16 5D1 sing 52 n n CAU H17 5D1 sing 53 n n CAU H18 5D1 sing 54 n n CAT H19 5D1 sing 55 n n CBH H20 5D1 sing 56 n n CBH H21 5D1 sing 57 n n NAR H22 5D1 sing 58 n n CAP H23 5D1 sing 59 n n CAP H24 5D1 sing 60 n n CAO H25 5D1 sing 61 n n CAO H26 5D1 sing 62 n n CAN H27 5D1 sing 63 n n CAN H28 5D1 sing 64 n n CAC H29 5D1 sing 65 n n CAD H30 5D1 sing 66 n n CAE H31 5D1 sing 67 n n CAF H32 5D1 sing 68 n n CAK H33 5D1 sing 69 n n CAK H34 5D1 sing 70 n n CAK H35 5D1 sing 71 n n CAI H36 5D1 sing 72 n n # _atom_sites.entry_id 5DLZ _atom_sites.fract_transf_matrix[1][1] 0.026836 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022606 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012749 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5D1 A 1 201 1 5D1 DRG . C 3 HOH A 1 301 8 HOH HOH . C 3 HOH A 2 302 38 HOH HOH . C 3 HOH A 3 303 19 HOH HOH . C 3 HOH A 4 304 32 HOH HOH . C 3 HOH A 5 305 37 HOH HOH . C 3 HOH A 6 306 28 HOH HOH . C 3 HOH A 7 307 36 HOH HOH . C 3 HOH A 8 308 31 HOH HOH . C 3 HOH A 9 309 25 HOH HOH . C 3 HOH A 10 310 15 HOH HOH . C 3 HOH A 11 311 5 HOH HOH . C 3 HOH A 12 312 13 HOH HOH . C 3 HOH A 13 313 7 HOH HOH . C 3 HOH A 14 314 39 HOH HOH . C 3 HOH A 15 315 27 HOH HOH . C 3 HOH A 16 316 24 HOH HOH . C 3 HOH A 17 317 34 HOH HOH . C 3 HOH A 18 318 30 HOH HOH . C 3 HOH A 19 319 33 HOH HOH . C 3 HOH A 20 320 6 HOH HOH . C 3 HOH A 21 321 26 HOH HOH . C 3 HOH A 22 322 1 HOH HOH . C 3 HOH A 23 323 14 HOH HOH . C 3 HOH A 24 324 3 HOH HOH . C 3 HOH A 25 325 11 HOH HOH . C 3 HOH A 26 326 35 HOH HOH . C 3 HOH A 27 327 17 HOH HOH . C 3 HOH A 28 328 4 HOH HOH . C 3 HOH A 29 329 20 HOH HOH . C 3 HOH A 30 330 9 HOH HOH . C 3 HOH A 31 331 10 HOH HOH . C 3 HOH A 32 332 18 HOH HOH . C 3 HOH A 33 333 16 HOH HOH . C 3 HOH A 34 334 29 HOH HOH . C 3 HOH A 35 335 21 HOH HOH . C 3 HOH A 36 336 23 HOH HOH . C 3 HOH A 37 337 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CBG 5D1 . . . B 2 -11.806 -21.321 3.287 1 46.27 ? CBG 5D1 201 A 1 HETATM 2 C CBC 5D1 . . . B 2 -11.003 -20.35 2.698 1 44.23 ? CBC 5D1 201 A 1 HETATM 3 C CBB 5D1 . . . B 2 -10.154 -19.583 3.505 1 53.5 ? CBB 5D1 201 A 1 HETATM 4 C CBD 5D1 . . . B 2 -11.021 -20.13 1.305 1 47.76 ? CBD 5D1 201 A 1 HETATM 5 C CBE 5D1 . . . B 2 -10.213 -19.14 0.725 1 46.7 ? CBE 5D1 201 A 1 HETATM 6 C CBF 5D1 . . . B 2 -9.353 -18.373 1.542 1 50.52 ? CBF 5D1 201 A 1 HETATM 7 C CBA 5D1 . . . B 2 -9.327 -18.575 2.948 1 57.38 ? CBA 5D1 201 A 1 HETATM 8 C CAZ 5D1 . . . B 2 -8.452 -17.826 3.775 1 51.98 ? CAZ 5D1 201 A 1 HETATM 9 N NAW 5D1 . . . B 2 -9.056 -16.572 4.355 1 50.34 ? NAW 5D1 201 A 1 HETATM 10 C CAX 5D1 . . . B 2 -10.096 -16.806 5.399 1 48.44 ? CAX 5D1 201 A 1 HETATM 11 C CAY 5D1 . . . B 2 -11.115 -15.677 5.425 1 47.21 ? CAY 5D1 201 A 1 HETATM 12 C CAV 5D1 . . . B 2 -9.42 -15.62 3.278 1 44 ? CAV 5D1 201 A 1 HETATM 13 C CAU 5D1 . . . B 2 -9.574 -14.232 3.863 1 39.92 ? CAU 5D1 201 A 1 HETATM 14 C CAT 5D1 . . . B 2 -10.392 -14.302 5.197 1 43.67 ? CAT 5D1 201 A 1 HETATM 15 C CBH 5D1 . . . B 2 -11.426 -13.136 5.23 1 46.18 ? CBH 5D1 201 A 1 HETATM 16 N NAR 5D1 . . . B 2 -10.638 -11.883 5.262 1 36.18 ? NAR 5D1 201 A 1 HETATM 17 C CAQ 5D1 . . . B 2 -11.03 -10.616 4.976 1 26.69 ? CAQ 5D1 201 A 1 HETATM 18 O OAS 5D1 . . . B 2 -10.151 -9.755 5.132 1 36.25 ? OAS 5D1 201 A 1 HETATM 19 C CAP 5D1 . . . B 2 -12.499 -10.278 4.376 1 20.73 ? CAP 5D1 201 A 1 HETATM 20 C CAO 5D1 . . . B 2 -12.982 -8.915 4.924 1 16.52 ? CAO 5D1 201 A 1 HETATM 21 C CAN 5D1 . . . B 2 -13.603 -7.995 3.848 1 12.12 ? CAN 5D1 201 A 1 HETATM 22 O OAM 5D1 . . . B 2 -12.552 -7.737 2.857 1 10.62 ? OAM 5D1 201 A 1 HETATM 23 C CAJ 5D1 . . . B 2 -12.649 -6.817 1.814 1 9.46 ? CAJ 5D1 201 A 1 HETATM 24 C CAB 5D1 . . . B 2 -11.461 -6.61 1.06 1 10.51 ? CAB 5D1 201 A 1 HETATM 25 C CAC 5D1 . . . B 2 -10.274 -7.275 1.38 1 10.81 ? CAC 5D1 201 A 1 HETATM 26 C CAD 5D1 . . . B 2 -9.146 -7.081 0.611 1 11.88 ? CAD 5D1 201 A 1 HETATM 27 C CAE 5D1 . . . B 2 -9.168 -6.216 -0.469 1 12.02 ? CAE 5D1 201 A 1 HETATM 28 C CAF 5D1 . . . B 2 -10.309 -5.516 -0.795 1 11.4 ? CAF 5D1 201 A 1 HETATM 29 C CAA 5D1 . . . B 2 -11.469 -5.65 0.004 1 11.41 ? CAA 5D1 201 A 1 HETATM 30 N NAG 5D1 . . . B 2 -12.646 -4.991 -0.324 1 10.97 ? NAG 5D1 201 A 1 HETATM 31 C CAK 5D1 . . . B 2 -12.618 -4.001 -1.442 1 12.78 ? CAK 5D1 201 A 1 HETATM 32 C CAH 5D1 . . . B 2 -13.787 -5.138 0.374 1 9.12 ? CAH 5D1 201 A 1 HETATM 33 O OAL 5D1 . . . B 2 -14.799 -4.457 0.093 1 9.67 ? OAL 5D1 201 A 1 HETATM 34 C CAI 5D1 . . . B 2 -13.803 -6.059 1.463 1 9.86 ? CAI 5D1 201 A 1 # _model_server_stats.io_time_ms 38 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 34 #