data_5DMC # _model_server_result.job_id CYMlc61RAAGbmCg0nLd_GQ _model_server_result.datetime_utc '2024-10-16 00:31:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dmc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":601}' # _entry.id 5DMC # _exptl.entry_id 5DMC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 313.349 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,3-bis(4-hydroxyphenyl)-2-phenylprop-2-enenitrile _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.05 _cell.angle_gamma 90 _cell.entry_id 5DMC _cell.length_a 55.51 _cell.length_b 82.65 _cell.length_c 58.58 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DMC _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C21 H15 N O2' _chem_comp.formula_weight 313.349 _chem_comp.id 5DH _chem_comp.mon_nstd_flag . _chem_comp.name 3,3-bis(4-hydroxyphenyl)-2-phenylprop-2-enenitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C22 C21 5DH doub 1 n y C22 C23 5DH sing 2 n y C21 C20 5DH sing 3 n y C23 C24 5DH doub 4 n y C20 C19 5DH doub 5 n y C24 C19 5DH sing 6 n y C19 C03 5DH sing 7 n n C03 C02 5DH sing 8 n n C03 C04 5DH doub 9 n n O16 C15 5DH sing 10 n n C02 N01 5DH trip 11 n n C15 C17 5DH doub 12 n y C15 C14 5DH sing 13 n y C17 C18 5DH sing 14 n y C14 C13 5DH doub 15 n y C18 C12 5DH doub 16 n y C13 C12 5DH sing 17 n y C12 C04 5DH sing 18 n n C04 C05 5DH sing 19 n n C11 C05 5DH doub 20 n y C11 C10 5DH sing 21 n y C05 C06 5DH sing 22 n y C10 C08 5DH doub 23 n y C06 C07 5DH doub 24 n y C08 C07 5DH sing 25 n y C08 O09 5DH sing 26 n n C06 H3 5DH sing 27 n n C07 H4 5DH sing 28 n n O09 H5 5DH sing 29 n n C10 H6 5DH sing 30 n n C11 H7 5DH sing 31 n n C13 H8 5DH sing 32 n n C14 H9 5DH sing 33 n n O16 H10 5DH sing 34 n n C17 H11 5DH sing 35 n n C18 H12 5DH sing 36 n n C20 H13 5DH sing 37 n n C21 H14 5DH sing 38 n n C22 H15 5DH sing 39 n n C23 H16 5DH sing 40 n n C24 H17 5DH sing 41 n n # _atom_sites.entry_id 5DMC _atom_sites.fract_transf_matrix[1][1] 0.018015 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006933 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012099 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018291 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 5DH A 1 601 1 5DH UNK . F 3 5DH B 1 601 1 5DH UNK . G 4 HOH A 1 701 60 HOH HOH . G 4 HOH A 2 702 64 HOH HOH . G 4 HOH A 3 703 67 HOH HOH . G 4 HOH A 4 704 72 HOH HOH . G 4 HOH A 5 705 27 HOH HOH . G 4 HOH A 6 706 50 HOH HOH . G 4 HOH A 7 707 59 HOH HOH . G 4 HOH A 8 708 18 HOH HOH . G 4 HOH A 9 709 88 HOH HOH . G 4 HOH A 10 710 3 HOH HOH . G 4 HOH A 11 711 35 HOH HOH . G 4 HOH A 12 712 94 HOH HOH . G 4 HOH A 13 713 42 HOH HOH . G 4 HOH A 14 714 6 HOH HOH . G 4 HOH A 15 715 101 HOH HOH . G 4 HOH A 16 716 62 HOH HOH . G 4 HOH A 17 717 21 HOH HOH . G 4 HOH A 18 718 10 HOH HOH . G 4 HOH A 19 719 56 HOH HOH . G 4 HOH A 20 720 29 HOH HOH . G 4 HOH A 21 721 44 HOH HOH . G 4 HOH A 22 722 57 HOH HOH . G 4 HOH A 23 723 79 HOH HOH . G 4 HOH A 24 724 7 HOH HOH . G 4 HOH A 25 725 47 HOH HOH . G 4 HOH A 26 726 84 HOH HOH . G 4 HOH A 27 727 34 HOH HOH . G 4 HOH A 28 728 2 HOH HOH . G 4 HOH A 29 729 5 HOH HOH . G 4 HOH A 30 730 58 HOH HOH . G 4 HOH A 31 731 54 HOH HOH . G 4 HOH A 32 732 9 HOH HOH . G 4 HOH A 33 733 20 HOH HOH . G 4 HOH A 34 734 22 HOH HOH . G 4 HOH A 35 735 75 HOH HOH . G 4 HOH A 36 736 74 HOH HOH . G 4 HOH A 37 737 8 HOH HOH . G 4 HOH A 38 738 99 HOH HOH . G 4 HOH A 39 739 25 HOH HOH . G 4 HOH A 40 740 70 HOH HOH . G 4 HOH A 41 741 103 HOH HOH . G 4 HOH A 42 742 77 HOH HOH . G 4 HOH A 43 743 82 HOH HOH . G 4 HOH A 44 744 78 HOH HOH . G 4 HOH A 45 745 66 HOH HOH . G 4 HOH A 46 746 73 HOH HOH . G 4 HOH A 47 747 52 HOH HOH . G 4 HOH A 48 748 12 HOH HOH . G 4 HOH A 49 749 93 HOH HOH . H 4 HOH B 1 701 46 HOH HOH . H 4 HOH B 2 702 68 HOH HOH . H 4 HOH B 3 703 90 HOH HOH . H 4 HOH B 4 704 91 HOH HOH . H 4 HOH B 5 705 28 HOH HOH . H 4 HOH B 6 706 48 HOH HOH . H 4 HOH B 7 707 65 HOH HOH . H 4 HOH B 8 708 31 HOH HOH . H 4 HOH B 9 709 1 HOH HOH . H 4 HOH B 10 710 24 HOH HOH . H 4 HOH B 11 711 15 HOH HOH . H 4 HOH B 12 712 95 HOH HOH . H 4 HOH B 13 713 17 HOH HOH . H 4 HOH B 14 714 43 HOH HOH . H 4 HOH B 15 715 37 HOH HOH . H 4 HOH B 16 716 49 HOH HOH . H 4 HOH B 17 717 83 HOH HOH . H 4 HOH B 18 718 14 HOH HOH . H 4 HOH B 19 719 30 HOH HOH . H 4 HOH B 20 720 16 HOH HOH . H 4 HOH B 21 721 51 HOH HOH . H 4 HOH B 22 722 4 HOH HOH . H 4 HOH B 23 723 100 HOH HOH . H 4 HOH B 24 724 45 HOH HOH . H 4 HOH B 25 725 33 HOH HOH . H 4 HOH B 26 726 40 HOH HOH . H 4 HOH B 27 727 23 HOH HOH . H 4 HOH B 28 728 41 HOH HOH . H 4 HOH B 29 729 13 HOH HOH . H 4 HOH B 30 730 92 HOH HOH . H 4 HOH B 31 731 38 HOH HOH . H 4 HOH B 32 732 69 HOH HOH . H 4 HOH B 33 733 26 HOH HOH . H 4 HOH B 34 734 89 HOH HOH . H 4 HOH B 35 735 71 HOH HOH . H 4 HOH B 36 736 55 HOH HOH . H 4 HOH B 37 737 63 HOH HOH . H 4 HOH B 38 738 97 HOH HOH . H 4 HOH B 39 739 96 HOH HOH . H 4 HOH B 40 740 104 HOH HOH . H 4 HOH B 41 741 86 HOH HOH . H 4 HOH B 42 742 36 HOH HOH . H 4 HOH B 43 743 80 HOH HOH . H 4 HOH B 44 744 39 HOH HOH . H 4 HOH B 45 745 81 HOH HOH . H 4 HOH B 46 746 53 HOH HOH . H 4 HOH B 47 747 19 HOH HOH . H 4 HOH B 48 748 102 HOH HOH . I 4 HOH C 1 701 11 HOH HOH . J 4 HOH D 1 701 87 HOH HOH . J 4 HOH D 2 702 76 HOH HOH . J 4 HOH D 3 703 32 HOH HOH . J 4 HOH D 4 704 61 HOH HOH . J 4 HOH D 5 705 85 HOH HOH . J 4 HOH D 6 706 98 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N01 5DH . . . E 3 -16.309 -28.031 -5.282 0.77 26.63 ? N01 5DH 601 A 1 HETATM 2 C C02 5DH . . . E 3 -17.205 -27.385 -5.55 0.77 12.66 ? C02 5DH 601 A 1 HETATM 3 C C03 5DH . . . E 3 -18.374 -26.54 -5.9 0.77 14.01 ? C03 5DH 601 A 1 HETATM 4 C C04 5DH . . . E 3 -18.969 -25.699 -4.988 0.77 11.71 ? C04 5DH 601 A 1 HETATM 5 C C05 5DH . . . E 3 -18.241 -25.258 -3.746 0.77 11.19 ? C05 5DH 601 A 1 HETATM 6 C C06 5DH . . . E 3 -18.948 -25.182 -2.555 0.77 22.59 ? C06 5DH 601 A 1 HETATM 7 C C07 5DH . . . E 3 -18.317 -24.774 -1.39 0.77 6.83 ? C07 5DH 601 A 1 HETATM 8 C C08 5DH . . . E 3 -16.972 -24.437 -1.407 0.77 14.84 ? C08 5DH 601 A 1 HETATM 9 O O09 5DH . . . E 3 -16.348 -24.033 -0.246 0.77 14.88 ? O09 5DH 601 A 1 HETATM 10 C C10 5DH . . . E 3 -16.257 -24.507 -2.595 0.77 15.07 ? C10 5DH 601 A 1 HETATM 11 C C11 5DH . . . E 3 -16.892 -24.908 -3.762 0.77 9.88 ? C11 5DH 601 A 1 HETATM 12 C C12 5DH . . . E 3 -20.373 -25.208 -5.182 0.77 17.98 ? C12 5DH 601 A 1 HETATM 13 C C13 5DH . . . E 3 -21.428 -26.109 -5.244 0.77 27.01 ? C13 5DH 601 A 1 HETATM 14 C C14 5DH . . . E 3 -22.727 -25.653 -5.426 0.77 17.39 ? C14 5DH 601 A 1 HETATM 15 C C15 5DH . . . E 3 -22.976 -24.294 -5.544 0.77 21.08 ? C15 5DH 601 A 1 HETATM 16 O O16 5DH . . . E 3 -24.265 -23.843 -5.723 0.77 29.89 ? O16 5DH 601 A 1 HETATM 17 C C17 5DH . . . E 3 -21.921 -23.392 -5.481 0.77 10.73 ? C17 5DH 601 A 1 HETATM 18 C C18 5DH . . . E 3 -20.623 -23.848 -5.301 0.77 9.12 ? C18 5DH 601 A 1 HETATM 19 C C19 5DH . . . E 3 -18.901 -26.79 -7.289 0.77 21.5 ? C19 5DH 601 A 1 HETATM 20 C C20 5DH . . . E 3 -19.395 -25.772 -8.097 0.77 21.14 ? C20 5DH 601 A 1 HETATM 21 C C21 5DH . . . E 3 -19.889 -26.06 -9.366 0.77 22.31 ? C21 5DH 601 A 1 HETATM 22 C C22 5DH . . . E 3 -19.873 -27.366 -9.836 0.77 20.81 ? C22 5DH 601 A 1 HETATM 23 C C23 5DH . . . E 3 -19.366 -28.376 -9.032 0.77 22.48 ? C23 5DH 601 A 1 HETATM 24 C C24 5DH . . . E 3 -18.882 -28.085 -7.764 0.77 28.54 ? C24 5DH 601 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 24 #