data_5DMF # _model_server_result.job_id 0sVTJI2zI2MhwXIRINQCXQ _model_server_result.datetime_utc '2024-11-25 13:24:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dmf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":601}' # _entry.id 5DMF # _exptl.entry_id 5DMF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 411.467 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "4,4'-(2-{3-[(4-fluorophenyl)amino]phenyl}prop-1-ene-1,1-diyl)diphenol" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.86 _cell.angle_gamma 90 _cell.entry_id 5DMF _cell.length_a 56.314 _cell.length_b 82.109 _cell.length_c 58.452 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DMF _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C27 H22 F N O2' _chem_comp.formula_weight 411.467 _chem_comp.id 5DG _chem_comp.mon_nstd_flag . _chem_comp.name "4,4'-(2-{3-[(4-fluorophenyl)amino]phenyl}prop-1-ene-1,1-diyl)diphenol" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F13 C12 5DG sing 1 n n C14 C12 5DG doub 2 n y C14 C15 5DG sing 3 n y C12 C11 5DG sing 4 n y C15 C09 5DG doub 5 n y C11 C10 5DG doub 6 n y C09 C10 5DG sing 7 n y C09 N08 5DG sing 8 n n C06 C05 5DG doub 9 n y C06 C07 5DG sing 10 n y N08 C07 5DG sing 11 n n C05 C04 5DG sing 12 n y C07 C16 5DG doub 13 n y C04 C03 5DG doub 14 n y C16 C03 5DG sing 15 n y C03 C02 5DG sing 16 n n C02 C01 5DG sing 17 n n C02 C17 5DG doub 18 n n O29 C28 5DG sing 19 n n C28 C30 5DG doub 20 n y C28 C27 5DG sing 21 n y C30 C31 5DG sing 22 n y C27 C26 5DG doub 23 n y C31 C25 5DG doub 24 n y C26 C25 5DG sing 25 n y C25 C17 5DG sing 26 n n C17 C18 5DG sing 27 n n C24 C18 5DG doub 28 n y C24 C23 5DG sing 29 n y C18 C19 5DG sing 30 n y C23 C21 5DG doub 31 n y C19 C20 5DG doub 32 n y C21 C20 5DG sing 33 n y C21 O22 5DG sing 34 n n C01 H1 5DG sing 35 n n C01 H2 5DG sing 36 n n C01 H3 5DG sing 37 n n C04 H5 5DG sing 38 n n C05 H6 5DG sing 39 n n C06 H7 5DG sing 40 n n N08 H8 5DG sing 41 n n C10 H9 5DG sing 42 n n C11 H10 5DG sing 43 n n C14 H11 5DG sing 44 n n C15 H12 5DG sing 45 n n C16 H13 5DG sing 46 n n C19 H15 5DG sing 47 n n C20 H16 5DG sing 48 n n O22 H17 5DG sing 49 n n C23 H18 5DG sing 50 n n C24 H19 5DG sing 51 n n C26 H20 5DG sing 52 n n C27 H21 5DG sing 53 n n O29 H22 5DG sing 54 n n C30 H23 5DG sing 55 n n C31 H24 5DG sing 56 n n # _atom_sites.entry_id 5DMF _atom_sites.fract_transf_matrix[1][1] 0.017758 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006767 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012179 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018308 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 5DG A 1 601 1 5DG UNK . F 3 5DG B 1 601 2 5DG UNK . G 4 HOH A 1 701 73 HOH HOH . G 4 HOH A 2 702 90 HOH HOH . G 4 HOH A 3 703 81 HOH HOH . G 4 HOH A 4 704 48 HOH HOH . G 4 HOH A 5 705 69 HOH HOH . G 4 HOH A 6 706 84 HOH HOH . G 4 HOH A 7 707 2 HOH HOH . G 4 HOH A 8 708 32 HOH HOH . G 4 HOH A 9 709 54 HOH HOH . G 4 HOH A 10 710 5 HOH HOH . G 4 HOH A 11 711 9 HOH HOH . G 4 HOH A 12 712 38 HOH HOH . G 4 HOH A 13 713 68 HOH HOH . G 4 HOH A 14 714 66 HOH HOH . G 4 HOH A 15 715 86 HOH HOH . G 4 HOH A 16 716 77 HOH HOH . G 4 HOH A 17 717 33 HOH HOH . G 4 HOH A 18 718 10 HOH HOH . G 4 HOH A 19 719 12 HOH HOH . G 4 HOH A 20 720 36 HOH HOH . G 4 HOH A 21 721 78 HOH HOH . G 4 HOH A 22 722 1 HOH HOH . G 4 HOH A 23 723 18 HOH HOH . G 4 HOH A 24 724 4 HOH HOH . G 4 HOH A 25 725 89 HOH HOH . G 4 HOH A 26 726 15 HOH HOH . G 4 HOH A 27 727 21 HOH HOH . G 4 HOH A 28 728 83 HOH HOH . G 4 HOH A 29 729 76 HOH HOH . G 4 HOH A 30 730 29 HOH HOH . G 4 HOH A 31 731 19 HOH HOH . G 4 HOH A 32 732 49 HOH HOH . G 4 HOH A 33 733 23 HOH HOH . G 4 HOH A 34 734 37 HOH HOH . G 4 HOH A 35 735 58 HOH HOH . G 4 HOH A 36 736 53 HOH HOH . G 4 HOH A 37 737 88 HOH HOH . G 4 HOH A 38 738 39 HOH HOH . G 4 HOH A 39 739 43 HOH HOH . G 4 HOH A 40 740 65 HOH HOH . G 4 HOH A 41 741 85 HOH HOH . G 4 HOH A 42 742 50 HOH HOH . G 4 HOH A 43 743 55 HOH HOH . G 4 HOH A 44 744 42 HOH HOH . G 4 HOH A 45 745 41 HOH HOH . G 4 HOH A 46 746 20 HOH HOH . H 4 HOH B 1 701 64 HOH HOH . H 4 HOH B 2 702 28 HOH HOH . H 4 HOH B 3 703 34 HOH HOH . H 4 HOH B 4 704 51 HOH HOH . H 4 HOH B 5 705 16 HOH HOH . H 4 HOH B 6 706 11 HOH HOH . H 4 HOH B 7 707 87 HOH HOH . H 4 HOH B 8 708 8 HOH HOH . H 4 HOH B 9 709 27 HOH HOH . H 4 HOH B 10 710 7 HOH HOH . H 4 HOH B 11 711 70 HOH HOH . H 4 HOH B 12 712 56 HOH HOH . H 4 HOH B 13 713 13 HOH HOH . H 4 HOH B 14 714 24 HOH HOH . H 4 HOH B 15 715 45 HOH HOH . H 4 HOH B 16 716 14 HOH HOH . H 4 HOH B 17 717 22 HOH HOH . H 4 HOH B 18 718 46 HOH HOH . H 4 HOH B 19 719 63 HOH HOH . H 4 HOH B 20 720 57 HOH HOH . H 4 HOH B 21 721 52 HOH HOH . H 4 HOH B 22 722 30 HOH HOH . H 4 HOH B 23 723 3 HOH HOH . H 4 HOH B 24 724 74 HOH HOH . H 4 HOH B 25 725 60 HOH HOH . H 4 HOH B 26 726 25 HOH HOH . H 4 HOH B 27 727 62 HOH HOH . H 4 HOH B 28 728 61 HOH HOH . H 4 HOH B 29 729 35 HOH HOH . H 4 HOH B 30 730 47 HOH HOH . H 4 HOH B 31 731 82 HOH HOH . H 4 HOH B 32 732 40 HOH HOH . H 4 HOH B 33 733 17 HOH HOH . H 4 HOH B 34 734 80 HOH HOH . H 4 HOH B 35 735 75 HOH HOH . H 4 HOH B 36 736 6 HOH HOH . H 4 HOH B 37 737 59 HOH HOH . H 4 HOH B 38 738 26 HOH HOH . I 4 HOH C 1 701 67 HOH HOH . I 4 HOH C 2 702 44 HOH HOH . I 4 HOH C 3 703 71 HOH HOH . J 4 HOH D 1 701 31 HOH HOH . J 4 HOH D 2 702 79 HOH HOH . J 4 HOH D 3 703 72 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 5DG . . . F 3 -11.658 -16.042 -31.511 0.89 44.46 ? C01 5DG 601 B 1 HETATM 2 C C02 5DG . . . F 3 -12.088 -17.475 -31.766 0.89 38.24 ? C02 5DG 601 B 1 HETATM 3 C C03 5DG . . . F 3 -13.281 -18.034 -31.013 0.89 42.67 ? C03 5DG 601 B 1 HETATM 4 C C04 5DG . . . F 3 -13.176 -19.248 -30.352 0.89 38.7 ? C04 5DG 601 B 1 HETATM 5 C C05 5DG . . . F 3 -14.264 -19.76 -29.662 0.89 42.48 ? C05 5DG 601 B 1 HETATM 6 C C06 5DG . . . F 3 -15.458 -19.057 -29.627 0.89 45.54 ? C06 5DG 601 B 1 HETATM 7 C C07 5DG . . . F 3 -15.568 -17.843 -30.287 0.89 49.4 ? C07 5DG 601 B 1 HETATM 8 N N08 5DG . . . F 3 -16.789 -17.112 -30.254 0.89 56.19 ? N08 5DG 601 B 1 HETATM 9 C C09 5DG . . . F 3 -18.044 -17.723 -30.525 0.89 57.58 ? C09 5DG 601 B 1 HETATM 10 C C10 5DG . . . F 3 -18.118 -18.901 -31.252 0.89 62.06 ? C10 5DG 601 B 1 HETATM 11 C C11 5DG . . . F 3 -19.35 -19.481 -31.511 0.89 68.64 ? C11 5DG 601 B 1 HETATM 12 C C12 5DG . . . F 3 -20.512 -18.882 -31.047 0.89 68.4 ? C12 5DG 601 B 1 HETATM 13 F F13 5DG . . . F 3 -21.702 -19.442 -31.298 0.89 67.45 ? F13 5DG 601 B 1 HETATM 14 C C14 5DG . . . F 3 -20.44 -17.702 -30.325 0.89 66.73 ? C14 5DG 601 B 1 HETATM 15 C C15 5DG . . . F 3 -19.208 -17.123 -30.065 0.89 64.32 ? C15 5DG 601 B 1 HETATM 16 C C16 5DG . . . F 3 -14.477 -17.33 -30.977 0.89 42.45 ? C16 5DG 601 B 1 HETATM 17 C C17 5DG . . . F 3 -11.391 -18.272 -32.611 0.89 33.2 ? C17 5DG 601 B 1 HETATM 18 C C18 5DG . . . F 3 -9.985 -17.935 -33.065 0.89 34.98 ? C18 5DG 601 B 1 HETATM 19 C C19 5DG . . . F 3 -9.683 -17.996 -34.417 0.89 33.84 ? C19 5DG 601 B 1 HETATM 20 C C20 5DG . . . F 3 -8.404 -17.702 -34.861 0.89 29.9 ? C20 5DG 601 B 1 HETATM 21 C C21 5DG . . . F 3 -7.421 -17.349 -33.951 0.89 33.55 ? C21 5DG 601 B 1 HETATM 22 O O22 5DG . . . F 3 -6.124 -17.05 -34.403 0.89 33.57 ? O22 5DG 601 B 1 HETATM 23 C C23 5DG . . . F 3 -7.718 -17.29 -32.597 0.89 34.26 ? C23 5DG 601 B 1 HETATM 24 C C24 5DG . . . F 3 -8.998 -17.588 -32.153 0.89 31.79 ? C24 5DG 601 B 1 HETATM 25 C C25 5DG . . . F 3 -12.055 -19.493 -33.216 0.89 40.4 ? C25 5DG 601 B 1 HETATM 26 C C26 5DG . . . F 3 -11.479 -20.743 -33.04 0.89 38.13 ? C26 5DG 601 B 1 HETATM 27 C C27 5DG . . . F 3 -12.079 -21.865 -33.592 0.89 38.47 ? C27 5DG 601 B 1 HETATM 28 C C28 5DG . . . F 3 -13.255 -21.736 -34.316 0.89 36.47 ? C28 5DG 601 B 1 HETATM 29 O O29 5DG . . . F 3 -13.865 -22.875 -34.875 0.89 41.82 ? O29 5DG 601 B 1 HETATM 30 C C30 5DG . . . F 3 -13.829 -20.486 -34.491 0.89 32.25 ? C30 5DG 601 B 1 HETATM 31 C C31 5DG . . . F 3 -13.229 -19.363 -33.941 0.89 37.63 ? C31 5DG 601 B 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 40 _model_server_stats.create_model_time_ms 89 _model_server_stats.query_time_ms 239 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #