data_5DMM # _model_server_result.job_id H1HqU2ATi2l9PTO-da80gA _model_server_result.datetime_utc '2025-01-03 02:08:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dmm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 5DMM # _exptl.entry_id 5DMM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5DMM _cell.length_a 78.949 _cell.length_b 85.924 _cell.length_c 87.662 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DMM _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 296 A CYS 296 1_555 E S2 BME . A BME 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc1 A OE1 GLU 104 A GLU 104 1_555 C ZN ZN . A ZN 502 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? metalc ? metalc2 A OE2 GLU 104 A GLU 104 1_555 C ZN ZN . A ZN 502 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.861 ? metalc ? metalc3 A OE2 GLU 109 A GLU 109 1_555 D ZN ZN . A ZN 503 8_455 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? metalc ? metalc4 A OD1 ASP 138 A ASP 138 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc5 A NE2 HIS 140 A HIS 140 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc6 A OE1 GLU 144 A GLU 144 1_555 D ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc7 A SG CYS 229 A CYS 229 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? metalc ? metalc8 A SG CYS 295 A CYS 295 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc9 B ZN ZN . A ZN 501 1_555 F SD HCS . A HCS 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.825 ? metalc ? metalc10 D ZN ZN . A ZN 503 1_555 G O HOH . A HOH 738 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc11 D ZN ZN . A ZN 503 1_555 G O HOH . A HOH 741 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5DMM _atom_sites.fract_transf_matrix[1][1] 0.012666 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011638 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011407 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 501 501 ZN ZN . C 2 ZN A 1 502 701 ZN ZN . D 2 ZN A 1 503 702 ZN ZN . E 3 BME A 1 504 802 BME BME . F 4 HCS A 1 505 504 HCS HCS . G 5 HOH A 1 601 235 HOH HOH . G 5 HOH A 2 602 215 HOH HOH . G 5 HOH A 3 603 156 HOH HOH . G 5 HOH A 4 604 81 HOH HOH . G 5 HOH A 5 605 132 HOH HOH . G 5 HOH A 6 606 29 HOH HOH . G 5 HOH A 7 607 49 HOH HOH . G 5 HOH A 8 608 216 HOH HOH . G 5 HOH A 9 609 196 HOH HOH . G 5 HOH A 10 610 106 HOH HOH . G 5 HOH A 11 611 222 HOH HOH . G 5 HOH A 12 612 74 HOH HOH . G 5 HOH A 13 613 25 HOH HOH . G 5 HOH A 14 614 84 HOH HOH . G 5 HOH A 15 615 48 HOH HOH . G 5 HOH A 16 616 92 HOH HOH . G 5 HOH A 17 617 40 HOH HOH . G 5 HOH A 18 618 66 HOH HOH . G 5 HOH A 19 619 117 HOH HOH . G 5 HOH A 20 620 67 HOH HOH . G 5 HOH A 21 621 101 HOH HOH . G 5 HOH A 22 622 7 HOH HOH . G 5 HOH A 23 623 71 HOH HOH . G 5 HOH A 24 624 99 HOH HOH . G 5 HOH A 25 625 3 HOH HOH . G 5 HOH A 26 626 113 HOH HOH . G 5 HOH A 27 627 12 HOH HOH . G 5 HOH A 28 628 206 HOH HOH . G 5 HOH A 29 629 108 HOH HOH . G 5 HOH A 30 630 41 HOH HOH . G 5 HOH A 31 631 82 HOH HOH . G 5 HOH A 32 632 16 HOH HOH . G 5 HOH A 33 633 61 HOH HOH . G 5 HOH A 34 634 88 HOH HOH . G 5 HOH A 35 635 78 HOH HOH . G 5 HOH A 36 636 94 HOH HOH . G 5 HOH A 37 637 11 HOH HOH . G 5 HOH A 38 638 2 HOH HOH . G 5 HOH A 39 639 13 HOH HOH . G 5 HOH A 40 640 179 HOH HOH . G 5 HOH A 41 641 90 HOH HOH . G 5 HOH A 42 642 6 HOH HOH . G 5 HOH A 43 643 23 HOH HOH . G 5 HOH A 44 644 35 HOH HOH . G 5 HOH A 45 645 163 HOH HOH . G 5 HOH A 46 646 75 HOH HOH . G 5 HOH A 47 647 225 HOH HOH . G 5 HOH A 48 648 135 HOH HOH . G 5 HOH A 49 649 10 HOH HOH . G 5 HOH A 50 650 170 HOH HOH . G 5 HOH A 51 651 83 HOH HOH . G 5 HOH A 52 652 19 HOH HOH . G 5 HOH A 53 653 43 HOH HOH . G 5 HOH A 54 654 56 HOH HOH . G 5 HOH A 55 655 73 HOH HOH . G 5 HOH A 56 656 27 HOH HOH . G 5 HOH A 57 657 144 HOH HOH . G 5 HOH A 58 658 204 HOH HOH . G 5 HOH A 59 659 96 HOH HOH . G 5 HOH A 60 660 211 HOH HOH . G 5 HOH A 61 661 62 HOH HOH . G 5 HOH A 62 662 57 HOH HOH . G 5 HOH A 63 663 187 HOH HOH . G 5 HOH A 64 664 53 HOH HOH . G 5 HOH A 65 665 59 HOH HOH . G 5 HOH A 66 666 164 HOH HOH . G 5 HOH A 67 667 109 HOH HOH . G 5 HOH A 68 668 161 HOH HOH . G 5 HOH A 69 669 22 HOH HOH . G 5 HOH A 70 670 30 HOH HOH . G 5 HOH A 71 671 93 HOH HOH . G 5 HOH A 72 672 46 HOH HOH . G 5 HOH A 73 673 76 HOH HOH . G 5 HOH A 74 674 28 HOH HOH . G 5 HOH A 75 675 1 HOH HOH . G 5 HOH A 76 676 45 HOH HOH . G 5 HOH A 77 677 63 HOH HOH . G 5 HOH A 78 678 17 HOH HOH . G 5 HOH A 79 679 157 HOH HOH . G 5 HOH A 80 680 4 HOH HOH . G 5 HOH A 81 681 20 HOH HOH . G 5 HOH A 82 682 64 HOH HOH . G 5 HOH A 83 683 65 HOH HOH . G 5 HOH A 84 684 24 HOH HOH . G 5 HOH A 85 685 145 HOH HOH . G 5 HOH A 86 686 155 HOH HOH . G 5 HOH A 87 687 79 HOH HOH . G 5 HOH A 88 688 54 HOH HOH . G 5 HOH A 89 689 26 HOH HOH . G 5 HOH A 90 690 14 HOH HOH . G 5 HOH A 91 691 52 HOH HOH . G 5 HOH A 92 692 31 HOH HOH . G 5 HOH A 93 693 15 HOH HOH . G 5 HOH A 94 694 80 HOH HOH . G 5 HOH A 95 695 33 HOH HOH . G 5 HOH A 96 696 32 HOH HOH . G 5 HOH A 97 697 133 HOH HOH . G 5 HOH A 98 698 51 HOH HOH . G 5 HOH A 99 699 34 HOH HOH . G 5 HOH A 100 700 72 HOH HOH . G 5 HOH A 101 701 39 HOH HOH . G 5 HOH A 102 702 5 HOH HOH . G 5 HOH A 103 703 183 HOH HOH . G 5 HOH A 104 704 112 HOH HOH . G 5 HOH A 105 705 70 HOH HOH . G 5 HOH A 106 706 37 HOH HOH . G 5 HOH A 107 707 69 HOH HOH . G 5 HOH A 108 708 126 HOH HOH . G 5 HOH A 109 709 151 HOH HOH . G 5 HOH A 110 710 236 HOH HOH . G 5 HOH A 111 711 55 HOH HOH . G 5 HOH A 112 712 77 HOH HOH . G 5 HOH A 113 713 18 HOH HOH . G 5 HOH A 114 714 178 HOH HOH . G 5 HOH A 115 715 38 HOH HOH . G 5 HOH A 116 716 237 HOH HOH . G 5 HOH A 117 717 141 HOH HOH . G 5 HOH A 118 718 98 HOH HOH . G 5 HOH A 119 719 166 HOH HOH . G 5 HOH A 120 720 203 HOH HOH . G 5 HOH A 121 721 58 HOH HOH . G 5 HOH A 122 722 95 HOH HOH . G 5 HOH A 123 723 50 HOH HOH . G 5 HOH A 124 724 120 HOH HOH . G 5 HOH A 125 725 110 HOH HOH . G 5 HOH A 126 726 221 HOH HOH . G 5 HOH A 127 727 42 HOH HOH . G 5 HOH A 128 728 68 HOH HOH . G 5 HOH A 129 729 188 HOH HOH . G 5 HOH A 130 730 207 HOH HOH . G 5 HOH A 131 731 125 HOH HOH . G 5 HOH A 132 732 60 HOH HOH . G 5 HOH A 133 733 103 HOH HOH . G 5 HOH A 134 734 180 HOH HOH . G 5 HOH A 135 735 214 HOH HOH . G 5 HOH A 136 736 8 HOH HOH . G 5 HOH A 137 737 205 HOH HOH . G 5 HOH A 138 738 226 HOH HOH . G 5 HOH A 139 739 142 HOH HOH . G 5 HOH A 140 740 220 HOH HOH . G 5 HOH A 141 741 227 HOH HOH . G 5 HOH A 142 742 129 HOH HOH . G 5 HOH A 143 743 119 HOH HOH . G 5 HOH A 144 744 137 HOH HOH . G 5 HOH A 145 745 228 HOH HOH . G 5 HOH A 146 746 128 HOH HOH . G 5 HOH A 147 747 9 HOH HOH . G 5 HOH A 148 748 149 HOH HOH . G 5 HOH A 149 749 36 HOH HOH . G 5 HOH A 150 750 177 HOH HOH . G 5 HOH A 151 751 169 HOH HOH . G 5 HOH A 152 752 195 HOH HOH . G 5 HOH A 153 753 134 HOH HOH . G 5 HOH A 154 754 136 HOH HOH . G 5 HOH A 155 755 172 HOH HOH . G 5 HOH A 156 756 224 HOH HOH . G 5 HOH A 157 757 199 HOH HOH . G 5 HOH A 158 758 91 HOH HOH . G 5 HOH A 159 759 21 HOH HOH . G 5 HOH A 160 760 121 HOH HOH . G 5 HOH A 161 761 122 HOH HOH . G 5 HOH A 162 762 210 HOH HOH . G 5 HOH A 163 763 105 HOH HOH . G 5 HOH A 164 764 238 HOH HOH . G 5 HOH A 165 765 209 HOH HOH . G 5 HOH A 166 766 87 HOH HOH . G 5 HOH A 167 767 197 HOH HOH . G 5 HOH A 168 768 111 HOH HOH . G 5 HOH A 169 769 130 HOH HOH . G 5 HOH A 170 770 158 HOH HOH . G 5 HOH A 171 771 47 HOH HOH . G 5 HOH A 172 772 107 HOH HOH . G 5 HOH A 173 773 115 HOH HOH . G 5 HOH A 174 774 85 HOH HOH . G 5 HOH A 175 775 219 HOH HOH . G 5 HOH A 176 776 116 HOH HOH . G 5 HOH A 177 777 171 HOH HOH . G 5 HOH A 178 778 174 HOH HOH . G 5 HOH A 179 779 201 HOH HOH . G 5 HOH A 180 780 189 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 25.563 _atom_site.Cartn_y 19.286 _atom_site.Cartn_z -4.219 _atom_site.occupancy 0.35 _atom_site.B_iso_or_equiv 17 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 502 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #