data_5DMP
#
_model_server_result.job_id            jxIbtG5Fv-uF3AZDg0INUQ 
_model_server_result.datetime_utc      '2024-11-29 17:54:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5dmp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":206}' 
#
_entry.id    5DMP 
#
_exptl.entry_id    5DMP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5DMP 
_cell.length_a            57.07 
_cell.length_b            57.07 
_cell.length_c            105.041 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5DMP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 I MG MG . A MG 208 1_555 J O3 VN4 . A VN4 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? 
metalc ? metalc2 I MG MG . A MG 208 1_555 K O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 70 n n 
C1 C2 EDO sing 71 n n 
C1 H11 EDO sing 72 n n 
C1 H12 EDO sing 73 n n 
O1 HO1 EDO sing 74 n n 
C2 O2 EDO sing 75 n n 
C2 H21 EDO sing 76 n n 
C2 H22 EDO sing 77 n n 
O2 HO2 EDO sing 78 n n 
#
_atom_sites.entry_id                     5DMP 
_atom_sites.fract_transf_matrix[1][1]    0.017522 
_atom_sites.fract_transf_matrix[1][2]    0.010117 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020233 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00952 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 EDO A 1 201 1 EDO EDO . 
C 2 EDO A 1 202 2 EDO EDO . 
D 2 EDO A 1 203 3 EDO EDO . 
E 2 EDO A 1 204 4 EDO EDO . 
F 2 EDO A 1 205 5 EDO EDO . 
G 2 EDO A 1 206 6 EDO EDO . 
H 2 EDO A 1 207 7 EDO EDO . 
I 3 MG A 1 208 1 MG MG . 
J 4 VN4 A 1 209 1 VN4 VN4 . 
K 5 HOH A 1 301 87 HOH HOH . 
K 5 HOH A 2 302 22 HOH HOH . 
K 5 HOH A 3 303 79 HOH HOH . 
K 5 HOH A 4 304 43 HOH HOH . 
K 5 HOH A 5 305 15 HOH HOH . 
K 5 HOH A 6 306 7 HOH HOH . 
K 5 HOH A 7 307 26 HOH HOH . 
K 5 HOH A 8 308 83 HOH HOH . 
K 5 HOH A 9 309 20 HOH HOH . 
K 5 HOH A 10 310 63 HOH HOH . 
K 5 HOH A 11 311 29 HOH HOH . 
K 5 HOH A 12 312 64 HOH HOH . 
K 5 HOH A 13 313 37 HOH HOH . 
K 5 HOH A 14 314 21 HOH HOH . 
K 5 HOH A 15 315 50 HOH HOH . 
K 5 HOH A 16 316 58 HOH HOH . 
K 5 HOH A 17 317 34 HOH HOH . 
K 5 HOH A 18 318 70 HOH HOH . 
K 5 HOH A 19 319 12 HOH HOH . 
K 5 HOH A 20 320 18 HOH HOH . 
K 5 HOH A 21 321 19 HOH HOH . 
K 5 HOH A 22 322 21 HOH HOH . 
K 5 HOH A 23 323 42 HOH HOH . 
K 5 HOH A 24 324 67 HOH HOH . 
K 5 HOH A 25 325 30 HOH HOH . 
K 5 HOH A 26 326 1 HOH HOH . 
K 5 HOH A 27 327 8 HOH HOH . 
K 5 HOH A 28 328 54 HOH HOH . 
K 5 HOH A 29 329 81 HOH HOH . 
K 5 HOH A 30 330 31 HOH HOH . 
K 5 HOH A 31 331 17 HOH HOH . 
K 5 HOH A 32 332 39 HOH HOH . 
K 5 HOH A 33 333 85 HOH HOH . 
K 5 HOH A 34 334 65 HOH HOH . 
K 5 HOH A 35 335 13 HOH HOH . 
K 5 HOH A 36 336 24 HOH HOH . 
K 5 HOH A 37 337 57 HOH HOH . 
K 5 HOH A 38 338 10 HOH HOH . 
K 5 HOH A 39 339 16 HOH HOH . 
K 5 HOH A 40 340 28 HOH HOH . 
K 5 HOH A 41 341 3 HOH HOH . 
K 5 HOH A 42 342 40 HOH HOH . 
K 5 HOH A 43 343 47 HOH HOH . 
K 5 HOH A 44 344 62 HOH HOH . 
K 5 HOH A 45 345 11 HOH HOH . 
K 5 HOH A 46 346 35 HOH HOH . 
K 5 HOH A 47 347 78 HOH HOH . 
K 5 HOH A 48 348 23 HOH HOH . 
K 5 HOH A 49 349 3 HOH HOH . 
K 5 HOH A 50 350 2 HOH HOH . 
K 5 HOH A 51 351 14 HOH HOH . 
K 5 HOH A 52 352 49 HOH HOH . 
K 5 HOH A 53 353 9 HOH HOH . 
K 5 HOH A 54 354 32 HOH HOH . 
K 5 HOH A 55 355 76 HOH HOH . 
K 5 HOH A 56 356 5 HOH HOH . 
K 5 HOH A 57 357 53 HOH HOH . 
K 5 HOH A 58 358 75 HOH HOH . 
K 5 HOH A 59 359 46 HOH HOH . 
K 5 HOH A 60 360 6 HOH HOH . 
K 5 HOH A 61 361 4 HOH HOH . 
K 5 HOH A 62 362 25 HOH HOH . 
K 5 HOH A 63 363 55 HOH HOH . 
K 5 HOH A 64 364 27 HOH HOH . 
K 5 HOH A 65 365 82 HOH HOH . 
K 5 HOH A 66 366 52 HOH HOH . 
K 5 HOH A 67 367 16 HOH HOH . 
K 5 HOH A 68 368 74 HOH HOH . 
K 5 HOH A 69 369 44 HOH HOH . 
K 5 HOH A 70 370 68 HOH HOH . 
K 5 HOH A 71 371 41 HOH HOH . 
K 5 HOH A 72 372 45 HOH HOH . 
K 5 HOH A 73 373 56 HOH HOH . 
K 5 HOH A 74 374 1 HOH HOH . 
K 5 HOH A 75 375 33 HOH HOH . 
K 5 HOH A 76 376 80 HOH HOH . 
K 5 HOH A 77 377 48 HOH HOH . 
K 5 HOH A 78 378 38 HOH HOH . 
K 5 HOH A 79 379 72 HOH HOH . 
K 5 HOH A 80 380 77 HOH HOH . 
K 5 HOH A 81 381 60 HOH HOH . 
K 5 HOH A 82 382 61 HOH HOH . 
K 5 HOH A 83 383 59 HOH HOH . 
K 5 HOH A 84 384 84 HOH HOH . 
K 5 HOH A 85 385 66 HOH HOH . 
K 5 HOH A 86 386 89 HOH HOH . 
K 5 HOH A 87 387 73 HOH HOH . 
K 5 HOH A 88 388 69 HOH HOH . 
K 5 HOH A 89 389 71 HOH HOH . 
K 5 HOH A 90 390 86 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . G 2 16.272 10.163 20.484 1 63.34 ? C1 EDO 206 A 1 
HETATM 2 O O1 EDO . . . G 2 15.092 9.357 20.473 1 68.61 ? O1 EDO 206 A 1 
HETATM 3 C C2 EDO . . . G 2 16.606 10.601 19.057 1 55.78 ? C2 EDO 206 A 1 
HETATM 4 O O2 EDO . . . G 2 15.477 10.5 18.171 1 48.41 ? O2 EDO 206 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#