data_5DMU # _model_server_result.job_id y5O7B57N5cGu3H5Ku1AfOA _model_server_result.datetime_utc '2024-11-29 19:37:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dmu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 5DMU # _exptl.entry_id 5DMU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.02 _cell.angle_gamma 90 _cell.entry_id 5DMU _cell.length_a 44.42 _cell.length_b 60.55 _cell.length_c 59.41 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DMU _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ARG 137 A ARG 149 1_555 G NA NA . A NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.926 ? metalc ? metalc2 A OD1 ASN 234 A ASN 246 1_555 G NA NA . A NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.793 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 138 n n C1 C2 GOL sing 139 n n C1 H11 GOL sing 140 n n C1 H12 GOL sing 141 n n O1 HO1 GOL sing 142 n n C2 O2 GOL sing 143 n n C2 C3 GOL sing 144 n n C2 H2 GOL sing 145 n n O2 HO2 GOL sing 146 n n C3 O3 GOL sing 147 n n C3 H31 GOL sing 148 n n C3 H32 GOL sing 149 n n O3 HO3 GOL sing 150 n n # _atom_sites.entry_id 5DMU _atom_sites.fract_transf_matrix[1][1] 0.022512 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004384 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016515 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017148 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 401 1 EDO EDO . C 2 EDO A 1 402 2 EDO EDO . D 3 GOL A 1 403 1 GOL GOL . E 4 SO4 A 1 404 1 SO4 SO4 . F 4 SO4 A 1 405 2 SO4 SO4 . G 5 NA A 1 406 1 NA NA . H 6 HOH A 1 501 97 HOH HOH . H 6 HOH A 2 502 72 HOH HOH . H 6 HOH A 3 503 125 HOH HOH . H 6 HOH A 4 504 24 HOH HOH . H 6 HOH A 5 505 59 HOH HOH . H 6 HOH A 6 506 13 HOH HOH . H 6 HOH A 7 507 31 HOH HOH . H 6 HOH A 8 508 26 HOH HOH . H 6 HOH A 9 509 130 HOH HOH . H 6 HOH A 10 510 129 HOH HOH . H 6 HOH A 11 511 121 HOH HOH . H 6 HOH A 12 512 68 HOH HOH . H 6 HOH A 13 513 53 HOH HOH . H 6 HOH A 14 514 81 HOH HOH . H 6 HOH A 15 515 18 HOH HOH . H 6 HOH A 16 516 10 HOH HOH . H 6 HOH A 17 517 7 HOH HOH . H 6 HOH A 18 518 36 HOH HOH . H 6 HOH A 19 519 57 HOH HOH . H 6 HOH A 20 520 30 HOH HOH . H 6 HOH A 21 521 96 HOH HOH . H 6 HOH A 22 522 15 HOH HOH . H 6 HOH A 23 523 38 HOH HOH . H 6 HOH A 24 524 183 HOH HOH . H 6 HOH A 25 525 72 HOH HOH . H 6 HOH A 26 526 61 HOH HOH . H 6 HOH A 27 527 51 HOH HOH . H 6 HOH A 28 528 73 HOH HOH . H 6 HOH A 29 529 5 HOH HOH . H 6 HOH A 30 530 82 HOH HOH . H 6 HOH A 31 531 1 HOH HOH . H 6 HOH A 32 532 5 HOH HOH . H 6 HOH A 33 533 40 HOH HOH . H 6 HOH A 34 534 115 HOH HOH . H 6 HOH A 35 535 83 HOH HOH . H 6 HOH A 36 536 104 HOH HOH . H 6 HOH A 37 537 40 HOH HOH . H 6 HOH A 38 538 104 HOH HOH . H 6 HOH A 39 539 195 HOH HOH . H 6 HOH A 40 540 8 HOH HOH . H 6 HOH A 41 541 31 HOH HOH . H 6 HOH A 42 542 123 HOH HOH . H 6 HOH A 43 543 37 HOH HOH . H 6 HOH A 44 544 88 HOH HOH . H 6 HOH A 45 545 25 HOH HOH . H 6 HOH A 46 546 126 HOH HOH . H 6 HOH A 47 547 89 HOH HOH . H 6 HOH A 48 548 49 HOH HOH . H 6 HOH A 49 549 103 HOH HOH . H 6 HOH A 50 550 48 HOH HOH . H 6 HOH A 51 551 6 HOH HOH . H 6 HOH A 52 552 101 HOH HOH . H 6 HOH A 53 553 21 HOH HOH . H 6 HOH A 54 554 23 HOH HOH . H 6 HOH A 55 555 74 HOH HOH . H 6 HOH A 56 556 44 HOH HOH . H 6 HOH A 57 557 139 HOH HOH . H 6 HOH A 58 558 1 HOH HOH . H 6 HOH A 59 559 65 HOH HOH . H 6 HOH A 60 560 111 HOH HOH . H 6 HOH A 61 561 33 HOH HOH . H 6 HOH A 62 562 138 HOH HOH . H 6 HOH A 63 563 48 HOH HOH . H 6 HOH A 64 564 20 HOH HOH . H 6 HOH A 65 565 121 HOH HOH . H 6 HOH A 66 566 70 HOH HOH . H 6 HOH A 67 567 117 HOH HOH . H 6 HOH A 68 568 120 HOH HOH . H 6 HOH A 69 569 97 HOH HOH . H 6 HOH A 70 570 41 HOH HOH . H 6 HOH A 71 571 56 HOH HOH . H 6 HOH A 72 572 56 HOH HOH . H 6 HOH A 73 573 29 HOH HOH . H 6 HOH A 74 574 15 HOH HOH . H 6 HOH A 75 575 158 HOH HOH . H 6 HOH A 76 576 156 HOH HOH . H 6 HOH A 77 577 44 HOH HOH . H 6 HOH A 78 578 82 HOH HOH . H 6 HOH A 79 579 122 HOH HOH . H 6 HOH A 80 580 32 HOH HOH . H 6 HOH A 81 581 19 HOH HOH . H 6 HOH A 82 582 69 HOH HOH . H 6 HOH A 83 583 22 HOH HOH . H 6 HOH A 84 584 32 HOH HOH . H 6 HOH A 85 585 106 HOH HOH . H 6 HOH A 86 586 12 HOH HOH . H 6 HOH A 87 587 119 HOH HOH . H 6 HOH A 88 588 16 HOH HOH . H 6 HOH A 89 589 28 HOH HOH . H 6 HOH A 90 590 51 HOH HOH . H 6 HOH A 91 591 3 HOH HOH . H 6 HOH A 92 592 78 HOH HOH . H 6 HOH A 93 593 17 HOH HOH . H 6 HOH A 94 594 77 HOH HOH . H 6 HOH A 95 595 38 HOH HOH . H 6 HOH A 96 596 70 HOH HOH . H 6 HOH A 97 597 194 HOH HOH . H 6 HOH A 98 598 42 HOH HOH . H 6 HOH A 99 599 67 HOH HOH . H 6 HOH A 100 600 6 HOH HOH . H 6 HOH A 101 601 2 HOH HOH . H 6 HOH A 102 602 23 HOH HOH . H 6 HOH A 103 603 30 HOH HOH . H 6 HOH A 104 604 118 HOH HOH . H 6 HOH A 105 605 85 HOH HOH . H 6 HOH A 106 606 60 HOH HOH . H 6 HOH A 107 607 21 HOH HOH . H 6 HOH A 108 608 153 HOH HOH . H 6 HOH A 109 609 74 HOH HOH . H 6 HOH A 110 610 28 HOH HOH . H 6 HOH A 111 611 10 HOH HOH . H 6 HOH A 112 612 78 HOH HOH . H 6 HOH A 113 613 128 HOH HOH . H 6 HOH A 114 614 58 HOH HOH . H 6 HOH A 115 615 99 HOH HOH . H 6 HOH A 116 616 101 HOH HOH . H 6 HOH A 117 617 113 HOH HOH . H 6 HOH A 118 618 58 HOH HOH . H 6 HOH A 119 619 4 HOH HOH . H 6 HOH A 120 620 34 HOH HOH . H 6 HOH A 121 621 111 HOH HOH . H 6 HOH A 122 622 92 HOH HOH . H 6 HOH A 123 623 26 HOH HOH . H 6 HOH A 124 624 2 HOH HOH . H 6 HOH A 125 625 71 HOH HOH . H 6 HOH A 126 626 63 HOH HOH . H 6 HOH A 127 627 114 HOH HOH . H 6 HOH A 128 628 75 HOH HOH . H 6 HOH A 129 629 84 HOH HOH . H 6 HOH A 130 630 105 HOH HOH . H 6 HOH A 131 631 87 HOH HOH . H 6 HOH A 132 632 22 HOH HOH . H 6 HOH A 133 633 116 HOH HOH . H 6 HOH A 134 634 9 HOH HOH . H 6 HOH A 135 635 24 HOH HOH . H 6 HOH A 136 636 88 HOH HOH . H 6 HOH A 137 637 54 HOH HOH . H 6 HOH A 138 638 110 HOH HOH . H 6 HOH A 139 639 29 HOH HOH . H 6 HOH A 140 640 47 HOH HOH . H 6 HOH A 141 641 27 HOH HOH . H 6 HOH A 142 642 49 HOH HOH . H 6 HOH A 143 643 109 HOH HOH . H 6 HOH A 144 644 16 HOH HOH . H 6 HOH A 145 645 120 HOH HOH . H 6 HOH A 146 646 94 HOH HOH . H 6 HOH A 147 647 117 HOH HOH . H 6 HOH A 148 648 127 HOH HOH . H 6 HOH A 149 649 168 HOH HOH . H 6 HOH A 150 650 69 HOH HOH . H 6 HOH A 151 651 14 HOH HOH . H 6 HOH A 152 652 107 HOH HOH . H 6 HOH A 153 653 50 HOH HOH . H 6 HOH A 154 654 46 HOH HOH . H 6 HOH A 155 655 7 HOH HOH . H 6 HOH A 156 656 93 HOH HOH . H 6 HOH A 157 657 66 HOH HOH . H 6 HOH A 158 658 89 HOH HOH . H 6 HOH A 159 659 123 HOH HOH . H 6 HOH A 160 660 39 HOH HOH . H 6 HOH A 161 661 90 HOH HOH . H 6 HOH A 162 662 73 HOH HOH . H 6 HOH A 163 663 52 HOH HOH . H 6 HOH A 164 664 62 HOH HOH . H 6 HOH A 165 665 46 HOH HOH . H 6 HOH A 166 666 71 HOH HOH . H 6 HOH A 167 667 4 HOH HOH . H 6 HOH A 168 668 55 HOH HOH . H 6 HOH A 169 669 209 HOH HOH . H 6 HOH A 170 670 11 HOH HOH . H 6 HOH A 171 671 155 HOH HOH . H 6 HOH A 172 672 9 HOH HOH . H 6 HOH A 173 673 113 HOH HOH . H 6 HOH A 174 674 64 HOH HOH . H 6 HOH A 175 675 47 HOH HOH . H 6 HOH A 176 676 42 HOH HOH . H 6 HOH A 177 677 43 HOH HOH . H 6 HOH A 178 678 75 HOH HOH . H 6 HOH A 179 679 131 HOH HOH . H 6 HOH A 180 680 35 HOH HOH . H 6 HOH A 181 681 161 HOH HOH . H 6 HOH A 182 682 107 HOH HOH . H 6 HOH A 183 683 163 HOH HOH . H 6 HOH A 184 684 54 HOH HOH . H 6 HOH A 185 685 17 HOH HOH . H 6 HOH A 186 686 76 HOH HOH . H 6 HOH A 187 687 142 HOH HOH . H 6 HOH A 188 688 109 HOH HOH . H 6 HOH A 189 689 8 HOH HOH . H 6 HOH A 190 690 98 HOH HOH . H 6 HOH A 191 691 37 HOH HOH . H 6 HOH A 192 692 77 HOH HOH . H 6 HOH A 193 693 66 HOH HOH . H 6 HOH A 194 694 14 HOH HOH . H 6 HOH A 195 695 3 HOH HOH . H 6 HOH A 196 696 204 HOH HOH . H 6 HOH A 197 697 112 HOH HOH . H 6 HOH A 198 698 173 HOH HOH . H 6 HOH A 199 699 36 HOH HOH . H 6 HOH A 200 700 100 HOH HOH . H 6 HOH A 201 701 25 HOH HOH . H 6 HOH A 202 702 63 HOH HOH . H 6 HOH A 203 703 13 HOH HOH . H 6 HOH A 204 704 92 HOH HOH . H 6 HOH A 205 705 179 HOH HOH . H 6 HOH A 206 706 201 HOH HOH . H 6 HOH A 207 707 151 HOH HOH . H 6 HOH A 208 708 213 HOH HOH . H 6 HOH A 209 709 53 HOH HOH . H 6 HOH A 210 710 105 HOH HOH . H 6 HOH A 211 711 52 HOH HOH . H 6 HOH A 212 712 103 HOH HOH . H 6 HOH A 213 713 128 HOH HOH . H 6 HOH A 214 714 39 HOH HOH . H 6 HOH A 215 715 86 HOH HOH . H 6 HOH A 216 716 124 HOH HOH . H 6 HOH A 217 717 62 HOH HOH . H 6 HOH A 218 718 41 HOH HOH . H 6 HOH A 219 719 33 HOH HOH . H 6 HOH A 220 720 68 HOH HOH . H 6 HOH A 221 721 12 HOH HOH . H 6 HOH A 222 722 11 HOH HOH . H 6 HOH A 223 723 93 HOH HOH . H 6 HOH A 224 724 102 HOH HOH . H 6 HOH A 225 725 45 HOH HOH . H 6 HOH A 226 726 112 HOH HOH . H 6 HOH A 227 727 35 HOH HOH . H 6 HOH A 228 728 55 HOH HOH . H 6 HOH A 229 729 86 HOH HOH . H 6 HOH A 230 730 95 HOH HOH . H 6 HOH A 231 731 175 HOH HOH . H 6 HOH A 232 732 50 HOH HOH . H 6 HOH A 233 733 18 HOH HOH . H 6 HOH A 234 734 145 HOH HOH . H 6 HOH A 235 735 61 HOH HOH . H 6 HOH A 236 736 239 HOH HOH . H 6 HOH A 237 737 126 HOH HOH . H 6 HOH A 238 738 216 HOH HOH . H 6 HOH A 239 739 57 HOH HOH . H 6 HOH A 240 740 96 HOH HOH . H 6 HOH A 241 741 224 HOH HOH . H 6 HOH A 242 742 185 HOH HOH . H 6 HOH A 243 743 217 HOH HOH . H 6 HOH A 244 744 219 HOH HOH . H 6 HOH A 245 745 102 HOH HOH . H 6 HOH A 246 746 212 HOH HOH . H 6 HOH A 247 747 192 HOH HOH . H 6 HOH A 248 748 64 HOH HOH . H 6 HOH A 249 749 45 HOH HOH . H 6 HOH A 250 750 218 HOH HOH . H 6 HOH A 251 751 137 HOH HOH . H 6 HOH A 252 752 231 HOH HOH . H 6 HOH A 253 753 85 HOH HOH . H 6 HOH A 254 754 214 HOH HOH . H 6 HOH A 255 755 225 HOH HOH . H 6 HOH A 256 756 87 HOH HOH . H 6 HOH A 257 757 220 HOH HOH . H 6 HOH A 258 758 122 HOH HOH . H 6 HOH A 259 759 118 HOH HOH . H 6 HOH A 260 760 154 HOH HOH . H 6 HOH A 261 761 208 HOH HOH . H 6 HOH A 262 762 108 HOH HOH . H 6 HOH A 263 763 106 HOH HOH . H 6 HOH A 264 764 110 HOH HOH . H 6 HOH A 265 765 115 HOH HOH . H 6 HOH A 266 766 228 HOH HOH . H 6 HOH A 267 767 150 HOH HOH . H 6 HOH A 268 768 34 HOH HOH . H 6 HOH A 269 769 43 HOH HOH . H 6 HOH A 270 770 215 HOH HOH . H 6 HOH A 271 771 241 HOH HOH . H 6 HOH A 272 772 227 HOH HOH . H 6 HOH A 273 773 226 HOH HOH . H 6 HOH A 274 774 80 HOH HOH . H 6 HOH A 275 775 79 HOH HOH . H 6 HOH A 276 776 229 HOH HOH . H 6 HOH A 277 777 59 HOH HOH . H 6 HOH A 278 778 186 HOH HOH . H 6 HOH A 279 779 223 HOH HOH . H 6 HOH A 280 780 242 HOH HOH . H 6 HOH A 281 781 65 HOH HOH . H 6 HOH A 282 782 81 HOH HOH . H 6 HOH A 283 783 141 HOH HOH . H 6 HOH A 284 784 221 HOH HOH . H 6 HOH A 285 785 233 HOH HOH . H 6 HOH A 286 786 180 HOH HOH . H 6 HOH A 287 787 235 HOH HOH . H 6 HOH A 288 788 232 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 14.141 11.141 8.221 1 20.31 ? C1 GOL 403 A 1 HETATM 2 O O1 GOL . . . D 3 14.337 12.21 9.17 1 16.51 ? O1 GOL 403 A 1 HETATM 3 C C2 GOL . . . D 3 13.032 10.202 8.74 1 18.74 ? C2 GOL 403 A 1 HETATM 4 O O2 GOL . . . D 3 12.252 10.369 7.705 1 18.5 ? O2 GOL 403 A 1 HETATM 5 C C3 GOL . . . D 3 13.15 8.694 8.999 1 16.96 ? C3 GOL 403 A 1 HETATM 6 O O3 GOL . . . D 3 11.941 8.292 9.753 1 13.79 ? O3 GOL 403 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 913 _model_server_stats.encode_time_ms 26 _model_server_stats.element_count 6 #