data_5DN3
#
_model_server_result.job_id            zKbZc2ALnmjfCVBqsq1ZTw 
_model_server_result.datetime_utc      '2024-10-10 11:17:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5dn3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    5DN3 
#
_exptl.entry_id    5DN3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5DN3 
_cell.length_a            81.65 
_cell.length_b            81.65 
_cell.length_c            136.91 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5DN3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C THR 168 A THR 287 1_555 A N TPO 169 A TPO 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
covale ? covale2 A C TPO 169 A TPO 288 1_555 A N LEU 170 A LEU 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
metalc ? metalc1 A OD1 ASN 142 A ASN 261 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? 
metalc ? metalc2 A OD2 ASP 155 A ASP 274 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
metalc ? metalc3 B MG MG . A MG 401 1_555 E O2B ATP . A ATP 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? 
metalc ? metalc4 B MG MG . A MG 401 1_555 E O2A ATP . A ATP 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc5 B MG MG . A MG 401 1_555 F O HOH . A HOH 585 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? 
metalc ? metalc6 B MG MG . A MG 401 1_555 F O HOH . A HOH 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5DN3 
_atom_sites.fract_transf_matrix[1][1]    0.012247 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012247 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007304 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 401 1 MG MG . 
C 3 5DN A 1 402 1 5DN 035 . 
D 4 SO4 A 1 403 1 SO4 SO4 . 
E 5 ATP A 1 404 1 ATP ATP . 
F 6 HOH A 1 501 56 HOH HOH . 
F 6 HOH A 2 502 1 HOH HOH . 
F 6 HOH A 3 503 37 HOH HOH . 
F 6 HOH A 4 504 38 HOH HOH . 
F 6 HOH A 5 505 121 HOH HOH . 
F 6 HOH A 6 506 54 HOH HOH . 
F 6 HOH A 7 507 36 HOH HOH . 
F 6 HOH A 8 508 51 HOH HOH . 
F 6 HOH A 9 509 71 HOH HOH . 
F 6 HOH A 10 510 40 HOH HOH . 
F 6 HOH A 11 511 39 HOH HOH . 
F 6 HOH A 12 512 57 HOH HOH . 
F 6 HOH A 13 513 91 HOH HOH . 
F 6 HOH A 14 514 46 HOH HOH . 
F 6 HOH A 15 515 124 HOH HOH . 
F 6 HOH A 16 516 22 HOH HOH . 
F 6 HOH A 17 517 73 HOH HOH . 
F 6 HOH A 18 518 8 HOH HOH . 
F 6 HOH A 19 519 17 HOH HOH . 
F 6 HOH A 20 520 60 HOH HOH . 
F 6 HOH A 21 521 114 HOH HOH . 
F 6 HOH A 22 522 14 HOH HOH . 
F 6 HOH A 23 523 118 HOH HOH . 
F 6 HOH A 24 524 2 HOH HOH . 
F 6 HOH A 25 525 16 HOH HOH . 
F 6 HOH A 26 526 101 HOH HOH . 
F 6 HOH A 27 527 112 HOH HOH . 
F 6 HOH A 28 528 92 HOH HOH . 
F 6 HOH A 29 529 48 HOH HOH . 
F 6 HOH A 30 530 28 HOH HOH . 
F 6 HOH A 31 531 136 HOH HOH . 
F 6 HOH A 32 532 138 HOH HOH . 
F 6 HOH A 33 533 117 HOH HOH . 
F 6 HOH A 34 534 94 HOH HOH . 
F 6 HOH A 35 535 27 HOH HOH . 
F 6 HOH A 36 536 20 HOH HOH . 
F 6 HOH A 37 537 19 HOH HOH . 
F 6 HOH A 38 538 55 HOH HOH . 
F 6 HOH A 39 539 89 HOH HOH . 
F 6 HOH A 40 540 66 HOH HOH . 
F 6 HOH A 41 541 135 HOH HOH . 
F 6 HOH A 42 542 5 HOH HOH . 
F 6 HOH A 43 543 25 HOH HOH . 
F 6 HOH A 44 544 146 HOH HOH . 
F 6 HOH A 45 545 145 HOH HOH . 
F 6 HOH A 46 546 30 HOH HOH . 
F 6 HOH A 47 547 147 HOH HOH . 
F 6 HOH A 48 548 125 HOH HOH . 
F 6 HOH A 49 549 130 HOH HOH . 
F 6 HOH A 50 550 132 HOH HOH . 
F 6 HOH A 51 551 62 HOH HOH . 
F 6 HOH A 52 552 4 HOH HOH . 
F 6 HOH A 53 553 104 HOH HOH . 
F 6 HOH A 54 554 58 HOH HOH . 
F 6 HOH A 55 555 139 HOH HOH . 
F 6 HOH A 56 556 11 HOH HOH . 
F 6 HOH A 57 557 64 HOH HOH . 
F 6 HOH A 58 558 3 HOH HOH . 
F 6 HOH A 59 559 103 HOH HOH . 
F 6 HOH A 60 560 67 HOH HOH . 
F 6 HOH A 61 561 6 HOH HOH . 
F 6 HOH A 62 562 102 HOH HOH . 
F 6 HOH A 63 563 65 HOH HOH . 
F 6 HOH A 64 564 68 HOH HOH . 
F 6 HOH A 65 565 50 HOH HOH . 
F 6 HOH A 66 566 142 HOH HOH . 
F 6 HOH A 67 567 123 HOH HOH . 
F 6 HOH A 68 568 110 HOH HOH . 
F 6 HOH A 69 569 88 HOH HOH . 
F 6 HOH A 70 570 29 HOH HOH . 
F 6 HOH A 71 571 13 HOH HOH . 
F 6 HOH A 72 572 86 HOH HOH . 
F 6 HOH A 73 573 59 HOH HOH . 
F 6 HOH A 74 574 21 HOH HOH . 
F 6 HOH A 75 575 41 HOH HOH . 
F 6 HOH A 76 576 47 HOH HOH . 
F 6 HOH A 77 577 23 HOH HOH . 
F 6 HOH A 78 578 95 HOH HOH . 
F 6 HOH A 79 579 133 HOH HOH . 
F 6 HOH A 80 580 74 HOH HOH . 
F 6 HOH A 81 581 80 HOH HOH . 
F 6 HOH A 82 582 32 HOH HOH . 
F 6 HOH A 83 583 126 HOH HOH . 
F 6 HOH A 84 584 9 HOH HOH . 
F 6 HOH A 85 585 116 HOH HOH . 
F 6 HOH A 86 586 18 HOH HOH . 
F 6 HOH A 87 587 111 HOH HOH . 
F 6 HOH A 88 588 70 HOH HOH . 
F 6 HOH A 89 589 63 HOH HOH . 
F 6 HOH A 90 590 44 HOH HOH . 
F 6 HOH A 91 591 33 HOH HOH . 
F 6 HOH A 92 592 143 HOH HOH . 
F 6 HOH A 93 593 24 HOH HOH . 
F 6 HOH A 94 594 69 HOH HOH . 
F 6 HOH A 95 595 109 HOH HOH . 
F 6 HOH A 96 596 113 HOH HOH . 
F 6 HOH A 97 597 31 HOH HOH . 
F 6 HOH A 98 598 49 HOH HOH . 
F 6 HOH A 99 599 12 HOH HOH . 
F 6 HOH A 100 600 15 HOH HOH . 
F 6 HOH A 101 601 141 HOH HOH . 
F 6 HOH A 102 602 128 HOH HOH . 
F 6 HOH A 103 603 10 HOH HOH . 
F 6 HOH A 104 604 119 HOH HOH . 
F 6 HOH A 105 605 134 HOH HOH . 
F 6 HOH A 106 606 43 HOH HOH . 
F 6 HOH A 107 607 115 HOH HOH . 
F 6 HOH A 108 608 45 HOH HOH . 
F 6 HOH A 109 609 81 HOH HOH . 
F 6 HOH A 110 610 87 HOH HOH . 
F 6 HOH A 111 611 53 HOH HOH . 
F 6 HOH A 112 612 107 HOH HOH . 
F 6 HOH A 113 613 106 HOH HOH . 
F 6 HOH A 114 614 79 HOH HOH . 
F 6 HOH A 115 615 108 HOH HOH . 
F 6 HOH A 116 616 140 HOH HOH . 
F 6 HOH A 117 617 42 HOH HOH . 
F 6 HOH A 118 618 105 HOH HOH . 
F 6 HOH A 119 619 127 HOH HOH . 
F 6 HOH A 120 620 129 HOH HOH . 
F 6 HOH A 121 621 144 HOH HOH . 
F 6 HOH A 122 622 75 HOH HOH . 
F 6 HOH A 123 623 84 HOH HOH . 
F 6 HOH A 124 624 35 HOH HOH . 
F 6 HOH A 125 625 76 HOH HOH . 
F 6 HOH A 126 626 120 HOH HOH . 
F 6 HOH A 127 627 131 HOH HOH . 
F 6 HOH A 128 628 34 HOH HOH . 
F 6 HOH A 129 629 137 HOH HOH . 
F 6 HOH A 130 630 122 HOH HOH . 
F 6 HOH A 131 631 78 HOH HOH . 
F 6 HOH A 132 632 26 HOH HOH . 
F 6 HOH A 133 633 100 HOH HOH . 
F 6 HOH A 134 634 61 HOH HOH . 
F 6 HOH A 135 635 96 HOH HOH . 
F 6 HOH A 136 636 99 HOH HOH . 
F 6 HOH A 137 637 98 HOH HOH . 
F 6 HOH A 138 638 93 HOH HOH . 
F 6 HOH A 139 639 7 HOH HOH . 
F 6 HOH A 140 640 97 HOH HOH . 
F 6 HOH A 141 641 72 HOH HOH . 
F 6 HOH A 142 642 90 HOH HOH . 
F 6 HOH A 143 643 83 HOH HOH . 
F 6 HOH A 144 644 82 HOH HOH . 
F 6 HOH A 145 645 52 HOH HOH . 
F 6 HOH A 146 646 77 HOH HOH . 
F 6 HOH A 147 647 85 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               24.96 
_atom_site.Cartn_y               84.321 
_atom_site.Cartn_z               8.233 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        28.81 
_atom_site.pdbx_formal_charge    2 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           401 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#