data_5DN4
#
_model_server_result.job_id            KNr5AUU1E53cdV8hwlZwzA 
_model_server_result.datetime_utc      '2024-12-26 20:45:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5dn4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":404}' 
#
_entry.id    5DN4 
#
_exptl.entry_id    5DN4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              126.904 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'IODIDE ION' 
_entity.pdbx_number_of_molecules    11 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5DN4 
_cell.length_a            38.79 
_cell.length_b            43.63 
_cell.length_c            107.93 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5DN4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            D 
_struct_conn.ptnr1_label_atom_id            I 
_struct_conn.ptnr1_label_comp_id            IOD 
_struct_conn.ptnr1_label_seq_id             . 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             IOD 
_struct_conn.ptnr1_auth_seq_id              403 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            I 
_struct_conn.ptnr2_label_atom_id            I 
_struct_conn.ptnr2_label_comp_id            IOD 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             IOD 
_struct_conn.ptnr2_auth_seq_id              408 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.93 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'I -1' 
_chem_comp.formula_weight    126.904 
_chem_comp.id                IOD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'IODIDE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5DN4 
_atom_sites.fract_transf_matrix[1][1]    0.02578 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02292 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009265 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 IOD A 1 401 1 IOD IOD . 
C 2 IOD A 1 402 2 IOD IOD . 
D 2 IOD A 1 403 3 IOD IOD . 
E 2 IOD A 1 404 4 IOD IOD . 
F 2 IOD A 1 405 5 IOD IOD . 
G 2 IOD A 1 406 6 IOD IOD . 
H 2 IOD A 1 407 7 IOD IOD . 
I 2 IOD A 1 408 8 IOD IOD . 
J 2 IOD A 1 409 9 IOD IOD . 
K 2 IOD A 1 410 10 IOD IOD . 
L 2 IOD A 1 411 11 IOD IOD . 
M 3 CL A 1 412 1 CL CL . 
N 4 HOH A 1 501 150 HOH HOH . 
N 4 HOH A 2 502 125 HOH HOH . 
N 4 HOH A 3 503 32 HOH HOH . 
N 4 HOH A 4 504 137 HOH HOH . 
N 4 HOH A 5 505 27 HOH HOH . 
N 4 HOH A 6 506 38 HOH HOH . 
N 4 HOH A 7 507 76 HOH HOH . 
N 4 HOH A 8 508 41 HOH HOH . 
N 4 HOH A 9 509 130 HOH HOH . 
N 4 HOH A 10 510 37 HOH HOH . 
N 4 HOH A 11 511 64 HOH HOH . 
N 4 HOH A 12 512 18 HOH HOH . 
N 4 HOH A 13 513 54 HOH HOH . 
N 4 HOH A 14 514 53 HOH HOH . 
N 4 HOH A 15 515 46 HOH HOH . 
N 4 HOH A 16 516 48 HOH HOH . 
N 4 HOH A 17 517 22 HOH HOH . 
N 4 HOH A 18 518 13 HOH HOH . 
N 4 HOH A 19 519 81 HOH HOH . 
N 4 HOH A 20 520 134 HOH HOH . 
N 4 HOH A 21 521 20 HOH HOH . 
N 4 HOH A 22 522 124 HOH HOH . 
N 4 HOH A 23 523 43 HOH HOH . 
N 4 HOH A 24 524 10 HOH HOH . 
N 4 HOH A 25 525 84 HOH HOH . 
N 4 HOH A 26 526 57 HOH HOH . 
N 4 HOH A 27 527 5 HOH HOH . 
N 4 HOH A 28 528 106 HOH HOH . 
N 4 HOH A 29 529 83 HOH HOH . 
N 4 HOH A 30 530 113 HOH HOH . 
N 4 HOH A 31 531 33 HOH HOH . 
N 4 HOH A 32 532 34 HOH HOH . 
N 4 HOH A 33 533 26 HOH HOH . 
N 4 HOH A 34 534 136 HOH HOH . 
N 4 HOH A 35 535 6 HOH HOH . 
N 4 HOH A 36 536 67 HOH HOH . 
N 4 HOH A 37 537 1 HOH HOH . 
N 4 HOH A 38 538 3 HOH HOH . 
N 4 HOH A 39 539 63 HOH HOH . 
N 4 HOH A 40 540 129 HOH HOH . 
N 4 HOH A 41 541 7 HOH HOH . 
N 4 HOH A 42 542 86 HOH HOH . 
N 4 HOH A 43 543 59 HOH HOH . 
N 4 HOH A 44 544 58 HOH HOH . 
N 4 HOH A 45 545 19 HOH HOH . 
N 4 HOH A 46 546 79 HOH HOH . 
N 4 HOH A 47 547 2 HOH HOH . 
N 4 HOH A 48 548 117 HOH HOH . 
N 4 HOH A 49 549 40 HOH HOH . 
N 4 HOH A 50 550 105 HOH HOH . 
N 4 HOH A 51 551 78 HOH HOH . 
N 4 HOH A 52 552 12 HOH HOH . 
N 4 HOH A 53 553 77 HOH HOH . 
N 4 HOH A 54 554 71 HOH HOH . 
N 4 HOH A 55 555 39 HOH HOH . 
N 4 HOH A 56 556 14 HOH HOH . 
N 4 HOH A 57 557 16 HOH HOH . 
N 4 HOH A 58 558 96 HOH HOH . 
N 4 HOH A 59 559 9 HOH HOH . 
N 4 HOH A 60 560 28 HOH HOH . 
N 4 HOH A 61 561 98 HOH HOH . 
N 4 HOH A 62 562 52 HOH HOH . 
N 4 HOH A 63 563 44 HOH HOH . 
N 4 HOH A 64 564 85 HOH HOH . 
N 4 HOH A 65 565 99 HOH HOH . 
N 4 HOH A 66 566 148 HOH HOH . 
N 4 HOH A 67 567 42 HOH HOH . 
N 4 HOH A 68 568 95 HOH HOH . 
N 4 HOH A 69 569 23 HOH HOH . 
N 4 HOH A 70 570 94 HOH HOH . 
N 4 HOH A 71 571 17 HOH HOH . 
N 4 HOH A 72 572 29 HOH HOH . 
N 4 HOH A 73 573 66 HOH HOH . 
N 4 HOH A 74 574 147 HOH HOH . 
N 4 HOH A 75 575 36 HOH HOH . 
N 4 HOH A 76 576 89 HOH HOH . 
N 4 HOH A 77 577 45 HOH HOH . 
N 4 HOH A 78 578 80 HOH HOH . 
N 4 HOH A 79 579 87 HOH HOH . 
N 4 HOH A 80 580 102 HOH HOH . 
N 4 HOH A 81 581 50 HOH HOH . 
N 4 HOH A 82 582 21 HOH HOH . 
N 4 HOH A 83 583 4 HOH HOH . 
N 4 HOH A 84 584 120 HOH HOH . 
N 4 HOH A 85 585 31 HOH HOH . 
N 4 HOH A 86 586 135 HOH HOH . 
N 4 HOH A 87 587 149 HOH HOH . 
N 4 HOH A 88 588 56 HOH HOH . 
N 4 HOH A 89 589 119 HOH HOH . 
N 4 HOH A 90 590 69 HOH HOH . 
N 4 HOH A 91 591 97 HOH HOH . 
N 4 HOH A 92 592 88 HOH HOH . 
N 4 HOH A 93 593 91 HOH HOH . 
N 4 HOH A 94 594 100 HOH HOH . 
N 4 HOH A 95 595 121 HOH HOH . 
N 4 HOH A 96 596 111 HOH HOH . 
N 4 HOH A 97 597 8 HOH HOH . 
N 4 HOH A 98 598 145 HOH HOH . 
N 4 HOH A 99 599 51 HOH HOH . 
N 4 HOH A 100 600 127 HOH HOH . 
N 4 HOH A 101 601 108 HOH HOH . 
N 4 HOH A 102 602 142 HOH HOH . 
N 4 HOH A 103 603 82 HOH HOH . 
N 4 HOH A 104 604 68 HOH HOH . 
N 4 HOH A 105 605 65 HOH HOH . 
N 4 HOH A 106 606 11 HOH HOH . 
N 4 HOH A 107 607 141 HOH HOH . 
N 4 HOH A 108 608 128 HOH HOH . 
N 4 HOH A 109 609 101 HOH HOH . 
N 4 HOH A 110 610 104 HOH HOH . 
N 4 HOH A 111 611 133 HOH HOH . 
N 4 HOH A 112 612 49 HOH HOH . 
N 4 HOH A 113 613 72 HOH HOH . 
N 4 HOH A 114 614 126 HOH HOH . 
N 4 HOH A 115 615 146 HOH HOH . 
N 4 HOH A 116 616 60 HOH HOH . 
N 4 HOH A 117 617 92 HOH HOH . 
N 4 HOH A 118 618 47 HOH HOH . 
N 4 HOH A 119 619 93 HOH HOH . 
N 4 HOH A 120 620 109 HOH HOH . 
N 4 HOH A 121 621 122 HOH HOH . 
N 4 HOH A 122 622 152 HOH HOH . 
N 4 HOH A 123 623 143 HOH HOH . 
N 4 HOH A 124 624 15 HOH HOH . 
N 4 HOH A 125 625 25 HOH HOH . 
N 4 HOH A 126 626 24 HOH HOH . 
N 4 HOH A 127 627 110 HOH HOH . 
N 4 HOH A 128 628 139 HOH HOH . 
N 4 HOH A 129 629 35 HOH HOH . 
N 4 HOH A 130 630 116 HOH HOH . 
N 4 HOH A 131 631 30 HOH HOH . 
N 4 HOH A 132 632 75 HOH HOH . 
N 4 HOH A 133 633 55 HOH HOH . 
N 4 HOH A 134 634 151 HOH HOH . 
N 4 HOH A 135 635 115 HOH HOH . 
N 4 HOH A 136 636 62 HOH HOH . 
N 4 HOH A 137 637 61 HOH HOH . 
N 4 HOH A 138 638 114 HOH HOH . 
N 4 HOH A 139 639 73 HOH HOH . 
N 4 HOH A 140 640 118 HOH HOH . 
N 4 HOH A 141 641 107 HOH HOH . 
N 4 HOH A 142 642 131 HOH HOH . 
N 4 HOH A 143 643 90 HOH HOH . 
N 4 HOH A 144 644 132 HOH HOH . 
N 4 HOH A 145 645 103 HOH HOH . 
N 4 HOH A 146 646 112 HOH HOH . 
N 4 HOH A 147 647 140 HOH HOH . 
N 4 HOH A 148 648 70 HOH HOH . 
N 4 HOH A 149 649 144 HOH HOH . 
N 4 HOH A 150 650 74 HOH HOH . 
N 4 HOH A 151 651 138 HOH HOH . 
N 4 HOH A 152 652 123 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           I 
_atom_site.label_atom_id         I 
_atom_site.label_comp_id         IOD 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               25.808 
_atom_site.Cartn_y               35.642 
_atom_site.Cartn_z               40.351 
_atom_site.occupancy             0.5 
_atom_site.B_iso_or_equiv        28.78 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          I 
_atom_site.auth_comp_id          IOD 
_atom_site.auth_seq_id           404 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#