data_5DNE # _model_server_result.job_id SPNu8ruG8ehUVknR0N78Ow _model_server_result.datetime_utc '2024-11-01 07:30:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dne # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":604}' # _entry.id 5DNE # _exptl.entry_id 5DNE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5DNE _cell.length_a 123.91 _cell.length_b 154.79 _cell.length_c 157.31 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DNE _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 I N N ? 3 J N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 Q N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5DNE _atom_sites.fract_transf_matrix[1][1] 0.00807 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00646 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006357 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ASN A 1 601 700 ASN ASN . F 3 EDO A 1 602 5 EDO EDO . G 3 EDO A 1 603 8 EDO EDO . H 2 ASN B 1 601 700 ASN ASN . I 3 EDO B 1 602 3 EDO EDO . J 3 EDO B 1 603 4 EDO EDO . K 2 ASN C 1 601 700 ASN ASN . L 3 EDO C 1 602 2 EDO EDO . M 3 EDO C 1 603 6 EDO EDO . N 3 EDO C 1 604 7 EDO EDO . O 3 EDO C 1 605 9 EDO EDO . P 2 ASN D 1 601 700 ASN ASN . Q 3 EDO D 1 602 1 EDO EDO . R 4 HOH A 1 701 306 HOH HOH . R 4 HOH A 2 702 22 HOH HOH . R 4 HOH A 3 703 20 HOH HOH . R 4 HOH A 4 704 176 HOH HOH . R 4 HOH A 5 705 118 HOH HOH . R 4 HOH A 6 706 5 HOH HOH . R 4 HOH A 7 707 186 HOH HOH . R 4 HOH A 8 708 7 HOH HOH . R 4 HOH A 9 709 17 HOH HOH . R 4 HOH A 10 710 106 HOH HOH . R 4 HOH A 11 711 105 HOH HOH . R 4 HOH A 12 712 114 HOH HOH . R 4 HOH A 13 713 102 HOH HOH . R 4 HOH A 14 714 174 HOH HOH . R 4 HOH A 15 715 230 HOH HOH . R 4 HOH A 16 716 310 HOH HOH . R 4 HOH A 17 717 81 HOH HOH . R 4 HOH A 18 718 184 HOH HOH . R 4 HOH A 19 719 2 HOH HOH . R 4 HOH A 20 720 175 HOH HOH . R 4 HOH A 21 721 187 HOH HOH . R 4 HOH A 22 722 213 HOH HOH . R 4 HOH A 23 723 23 HOH HOH . R 4 HOH A 24 724 170 HOH HOH . R 4 HOH A 25 725 253 HOH HOH . R 4 HOH A 26 726 275 HOH HOH . R 4 HOH A 27 727 21 HOH HOH . R 4 HOH A 28 728 6 HOH HOH . R 4 HOH A 29 729 231 HOH HOH . R 4 HOH A 30 730 188 HOH HOH . R 4 HOH A 31 731 272 HOH HOH . R 4 HOH A 32 732 185 HOH HOH . R 4 HOH A 33 733 74 HOH HOH . R 4 HOH A 34 734 234 HOH HOH . R 4 HOH A 35 735 117 HOH HOH . R 4 HOH A 36 736 80 HOH HOH . R 4 HOH A 37 737 73 HOH HOH . R 4 HOH A 38 738 307 HOH HOH . R 4 HOH A 39 739 18 HOH HOH . R 4 HOH A 40 740 1 HOH HOH . R 4 HOH A 41 741 311 HOH HOH . R 4 HOH A 42 742 209 HOH HOH . R 4 HOH A 43 743 110 HOH HOH . R 4 HOH A 44 744 236 HOH HOH . R 4 HOH A 45 745 14 HOH HOH . R 4 HOH A 46 746 24 HOH HOH . R 4 HOH A 47 747 76 HOH HOH . R 4 HOH A 48 748 264 HOH HOH . R 4 HOH A 49 749 273 HOH HOH . R 4 HOH A 50 750 262 HOH HOH . R 4 HOH A 51 751 235 HOH HOH . R 4 HOH A 52 752 25 HOH HOH . R 4 HOH A 53 753 248 HOH HOH . R 4 HOH A 54 754 82 HOH HOH . R 4 HOH A 55 755 10 HOH HOH . R 4 HOH A 56 756 218 HOH HOH . R 4 HOH A 57 757 19 HOH HOH . R 4 HOH A 58 758 266 HOH HOH . R 4 HOH A 59 759 254 HOH HOH . R 4 HOH A 60 760 84 HOH HOH . R 4 HOH A 61 761 83 HOH HOH . R 4 HOH A 62 762 16 HOH HOH . R 4 HOH A 63 763 113 HOH HOH . R 4 HOH A 64 764 4 HOH HOH . R 4 HOH A 65 765 9 HOH HOH . R 4 HOH A 66 766 261 HOH HOH . R 4 HOH A 67 767 177 HOH HOH . R 4 HOH A 68 768 121 HOH HOH . R 4 HOH A 69 769 103 HOH HOH . R 4 HOH A 70 770 115 HOH HOH . R 4 HOH A 71 771 112 HOH HOH . R 4 HOH A 72 772 8 HOH HOH . R 4 HOH A 73 773 108 HOH HOH . R 4 HOH A 74 774 308 HOH HOH . R 4 HOH A 75 775 122 HOH HOH . R 4 HOH A 76 776 12 HOH HOH . R 4 HOH A 77 777 276 HOH HOH . R 4 HOH A 78 778 109 HOH HOH . R 4 HOH A 79 779 263 HOH HOH . R 4 HOH A 80 780 161 HOH HOH . R 4 HOH A 81 781 131 HOH HOH . R 4 HOH A 82 782 111 HOH HOH . R 4 HOH A 83 783 220 HOH HOH . R 4 HOH A 84 784 169 HOH HOH . R 4 HOH A 85 785 11 HOH HOH . R 4 HOH A 86 786 274 HOH HOH . R 4 HOH A 87 787 104 HOH HOH . R 4 HOH A 88 788 271 HOH HOH . R 4 HOH A 89 789 107 HOH HOH . S 4 HOH B 1 701 286 HOH HOH . S 4 HOH B 2 702 318 HOH HOH . S 4 HOH B 3 703 27 HOH HOH . S 4 HOH B 4 704 37 HOH HOH . S 4 HOH B 5 705 77 HOH HOH . S 4 HOH B 6 706 277 HOH HOH . S 4 HOH B 7 707 319 HOH HOH . S 4 HOH B 8 708 226 HOH HOH . S 4 HOH B 9 709 227 HOH HOH . S 4 HOH B 10 710 137 HOH HOH . S 4 HOH B 11 711 180 HOH HOH . S 4 HOH B 12 712 281 HOH HOH . S 4 HOH B 13 713 179 HOH HOH . S 4 HOH B 14 714 288 HOH HOH . S 4 HOH B 15 715 130 HOH HOH . S 4 HOH B 16 716 279 HOH HOH . S 4 HOH B 17 717 35 HOH HOH . S 4 HOH B 18 718 313 HOH HOH . S 4 HOH B 19 719 201 HOH HOH . S 4 HOH B 20 720 127 HOH HOH . S 4 HOH B 21 721 241 HOH HOH . S 4 HOH B 22 722 198 HOH HOH . S 4 HOH B 23 723 211 HOH HOH . S 4 HOH B 24 724 238 HOH HOH . S 4 HOH B 25 725 197 HOH HOH . S 4 HOH B 26 726 129 HOH HOH . S 4 HOH B 27 727 216 HOH HOH . S 4 HOH B 28 728 314 HOH HOH . S 4 HOH B 29 729 86 HOH HOH . S 4 HOH B 30 730 28 HOH HOH . S 4 HOH B 31 731 182 HOH HOH . S 4 HOH B 32 732 40 HOH HOH . S 4 HOH B 33 733 223 HOH HOH . S 4 HOH B 34 734 200 HOH HOH . S 4 HOH B 35 735 128 HOH HOH . S 4 HOH B 36 736 138 HOH HOH . S 4 HOH B 37 737 183 HOH HOH . S 4 HOH B 38 738 136 HOH HOH . S 4 HOH B 39 739 33 HOH HOH . S 4 HOH B 40 740 42 HOH HOH . S 4 HOH B 41 741 29 HOH HOH . S 4 HOH B 42 742 135 HOH HOH . S 4 HOH B 43 743 57 HOH HOH . S 4 HOH B 44 744 312 HOH HOH . S 4 HOH B 45 745 178 HOH HOH . S 4 HOH B 46 746 31 HOH HOH . S 4 HOH B 47 747 32 HOH HOH . S 4 HOH B 48 748 26 HOH HOH . S 4 HOH B 49 749 287 HOH HOH . S 4 HOH B 50 750 181 HOH HOH . S 4 HOH B 51 751 208 HOH HOH . S 4 HOH B 52 752 125 HOH HOH . S 4 HOH B 53 753 30 HOH HOH . S 4 HOH B 54 754 291 HOH HOH . S 4 HOH B 55 755 239 HOH HOH . S 4 HOH B 56 756 289 HOH HOH . S 4 HOH B 57 757 300 HOH HOH . S 4 HOH B 58 758 139 HOH HOH . S 4 HOH B 59 759 207 HOH HOH . S 4 HOH B 60 760 78 HOH HOH . S 4 HOH B 61 761 41 HOH HOH . S 4 HOH B 62 762 278 HOH HOH . S 4 HOH B 63 763 126 HOH HOH . S 4 HOH B 64 764 299 HOH HOH . S 4 HOH B 65 765 79 HOH HOH . S 4 HOH B 66 766 134 HOH HOH . S 4 HOH B 67 767 243 HOH HOH . S 4 HOH B 68 768 280 HOH HOH . S 4 HOH B 69 769 39 HOH HOH . S 4 HOH B 70 770 305 HOH HOH . S 4 HOH B 71 771 133 HOH HOH . S 4 HOH B 72 772 132 HOH HOH . S 4 HOH B 73 773 3 HOH HOH . S 4 HOH B 74 774 219 HOH HOH . S 4 HOH B 75 775 152 HOH HOH . S 4 HOH B 76 776 123 HOH HOH . S 4 HOH B 77 777 124 HOH HOH . S 4 HOH B 78 778 240 HOH HOH . S 4 HOH B 79 779 87 HOH HOH . S 4 HOH B 80 780 85 HOH HOH . S 4 HOH B 81 781 146 HOH HOH . T 4 HOH C 1 701 237 HOH HOH . T 4 HOH C 2 702 298 HOH HOH . T 4 HOH C 3 703 154 HOH HOH . T 4 HOH C 4 704 52 HOH HOH . T 4 HOH C 5 705 258 HOH HOH . T 4 HOH C 6 706 34 HOH HOH . T 4 HOH C 7 707 282 HOH HOH . T 4 HOH C 8 708 88 HOH HOH . T 4 HOH C 9 709 221 HOH HOH . T 4 HOH C 10 710 36 HOH HOH . T 4 HOH C 11 711 53 HOH HOH . T 4 HOH C 12 712 153 HOH HOH . T 4 HOH C 13 713 155 HOH HOH . T 4 HOH C 14 714 47 HOH HOH . T 4 HOH C 15 715 157 HOH HOH . T 4 HOH C 16 716 45 HOH HOH . T 4 HOH C 17 717 192 HOH HOH . T 4 HOH C 18 718 193 HOH HOH . T 4 HOH C 19 719 301 HOH HOH . T 4 HOH C 20 720 194 HOH HOH . T 4 HOH C 21 721 268 HOH HOH . T 4 HOH C 22 722 51 HOH HOH . T 4 HOH C 23 723 317 HOH HOH . T 4 HOH C 24 724 50 HOH HOH . T 4 HOH C 25 725 199 HOH HOH . T 4 HOH C 26 726 92 HOH HOH . T 4 HOH C 27 727 49 HOH HOH . T 4 HOH C 28 728 48 HOH HOH . T 4 HOH C 29 729 215 HOH HOH . T 4 HOH C 30 730 292 HOH HOH . T 4 HOH C 31 731 91 HOH HOH . T 4 HOH C 32 732 55 HOH HOH . T 4 HOH C 33 733 150 HOH HOH . T 4 HOH C 34 734 94 HOH HOH . T 4 HOH C 35 735 293 HOH HOH . T 4 HOH C 36 736 143 HOH HOH . T 4 HOH C 37 737 140 HOH HOH . T 4 HOH C 38 738 147 HOH HOH . T 4 HOH C 39 739 46 HOH HOH . T 4 HOH C 40 740 283 HOH HOH . T 4 HOH C 41 741 302 HOH HOH . T 4 HOH C 42 742 315 HOH HOH . T 4 HOH C 43 743 214 HOH HOH . T 4 HOH C 44 744 225 HOH HOH . T 4 HOH C 45 745 255 HOH HOH . T 4 HOH C 46 746 142 HOH HOH . T 4 HOH C 47 747 290 HOH HOH . T 4 HOH C 48 748 285 HOH HOH . T 4 HOH C 49 749 89 HOH HOH . T 4 HOH C 50 750 58 HOH HOH . T 4 HOH C 51 751 296 HOH HOH . T 4 HOH C 52 752 284 HOH HOH . T 4 HOH C 53 753 59 HOH HOH . T 4 HOH C 54 754 56 HOH HOH . T 4 HOH C 55 755 75 HOH HOH . T 4 HOH C 56 756 149 HOH HOH . T 4 HOH C 57 757 297 HOH HOH . T 4 HOH C 58 758 54 HOH HOH . T 4 HOH C 59 759 144 HOH HOH . T 4 HOH C 60 760 269 HOH HOH . T 4 HOH C 61 761 210 HOH HOH . T 4 HOH C 62 762 156 HOH HOH . T 4 HOH C 63 763 95 HOH HOH . T 4 HOH C 64 764 191 HOH HOH . T 4 HOH C 65 765 159 HOH HOH . T 4 HOH C 66 766 93 HOH HOH . T 4 HOH C 67 767 294 HOH HOH . T 4 HOH C 68 768 202 HOH HOH . T 4 HOH C 69 769 203 HOH HOH . T 4 HOH C 70 770 270 HOH HOH . T 4 HOH C 71 771 256 HOH HOH . T 4 HOH C 72 772 158 HOH HOH . T 4 HOH C 73 773 145 HOH HOH . T 4 HOH C 74 774 295 HOH HOH . T 4 HOH C 75 775 44 HOH HOH . T 4 HOH C 76 776 303 HOH HOH . T 4 HOH C 77 777 148 HOH HOH . T 4 HOH C 78 778 38 HOH HOH . T 4 HOH C 79 779 151 HOH HOH . T 4 HOH C 80 780 267 HOH HOH . U 4 HOH D 1 701 63 HOH HOH . U 4 HOH D 2 702 228 HOH HOH . U 4 HOH D 3 703 13 HOH HOH . U 4 HOH D 4 704 320 HOH HOH . U 4 HOH D 5 705 259 HOH HOH . U 4 HOH D 6 706 99 HOH HOH . U 4 HOH D 7 707 189 HOH HOH . U 4 HOH D 8 708 64 HOH HOH . U 4 HOH D 9 709 68 HOH HOH . U 4 HOH D 10 710 69 HOH HOH . U 4 HOH D 11 711 190 HOH HOH . U 4 HOH D 12 712 15 HOH HOH . U 4 HOH D 13 713 309 HOH HOH . U 4 HOH D 14 714 164 HOH HOH . U 4 HOH D 15 715 224 HOH HOH . U 4 HOH D 16 716 195 HOH HOH . U 4 HOH D 17 717 232 HOH HOH . U 4 HOH D 18 718 247 HOH HOH . U 4 HOH D 19 719 96 HOH HOH . U 4 HOH D 20 720 65 HOH HOH . U 4 HOH D 21 721 90 HOH HOH . U 4 HOH D 22 722 101 HOH HOH . U 4 HOH D 23 723 233 HOH HOH . U 4 HOH D 24 724 71 HOH HOH . U 4 HOH D 25 725 98 HOH HOH . U 4 HOH D 26 726 249 HOH HOH . U 4 HOH D 27 727 173 HOH HOH . U 4 HOH D 28 728 66 HOH HOH . U 4 HOH D 29 729 212 HOH HOH . U 4 HOH D 30 730 316 HOH HOH . U 4 HOH D 31 731 260 HOH HOH . U 4 HOH D 32 732 172 HOH HOH . U 4 HOH D 33 733 229 HOH HOH . U 4 HOH D 34 734 217 HOH HOH . U 4 HOH D 35 735 120 HOH HOH . U 4 HOH D 36 736 196 HOH HOH . U 4 HOH D 37 737 160 HOH HOH . U 4 HOH D 38 738 100 HOH HOH . U 4 HOH D 39 739 245 HOH HOH . U 4 HOH D 40 740 162 HOH HOH . U 4 HOH D 41 741 206 HOH HOH . U 4 HOH D 42 742 250 HOH HOH . U 4 HOH D 43 743 257 HOH HOH . U 4 HOH D 44 744 304 HOH HOH . U 4 HOH D 45 745 119 HOH HOH . U 4 HOH D 46 746 166 HOH HOH . U 4 HOH D 47 747 163 HOH HOH . U 4 HOH D 48 748 171 HOH HOH . U 4 HOH D 49 749 168 HOH HOH . U 4 HOH D 50 750 62 HOH HOH . U 4 HOH D 51 751 72 HOH HOH . U 4 HOH D 52 752 204 HOH HOH . U 4 HOH D 53 753 97 HOH HOH . U 4 HOH D 54 754 167 HOH HOH . U 4 HOH D 55 755 165 HOH HOH . U 4 HOH D 56 756 252 HOH HOH . U 4 HOH D 57 757 141 HOH HOH . U 4 HOH D 58 758 244 HOH HOH . U 4 HOH D 59 759 43 HOH HOH . U 4 HOH D 60 760 222 HOH HOH . U 4 HOH D 61 761 67 HOH HOH . U 4 HOH D 62 762 265 HOH HOH . U 4 HOH D 63 763 70 HOH HOH . U 4 HOH D 64 764 246 HOH HOH . U 4 HOH D 65 765 60 HOH HOH . U 4 HOH D 66 766 251 HOH HOH . U 4 HOH D 67 767 205 HOH HOH . U 4 HOH D 68 768 242 HOH HOH . U 4 HOH D 69 769 116 HOH HOH . U 4 HOH D 70 770 61 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . N 3 28.532 52.308 45.868 1 51.52 ? C1 EDO 604 C 1 HETATM 2 O O1 EDO . . . N 3 27.557 51.823 46.826 1 49.84 ? O1 EDO 604 C 1 HETATM 3 C C2 EDO . . . N 3 29.216 51.212 45.042 1 49.26 ? C2 EDO 604 C 1 HETATM 4 O O2 EDO . . . N 3 29.035 49.947 45.697 1 46.42 ? O2 EDO 604 C 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #