data_5DNR
#
_model_server_result.job_id            7Qmjz8TJrbdwlvEQMoLICg 
_model_server_result.datetime_utc      '2024-11-24 15:01:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5dnr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":404}' 
#
_entry.id    5DNR 
#
_exptl.entry_id    5DNR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5DNR 
_cell.length_a            81.46 
_cell.length_b            81.46 
_cell.length_c            137.38 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5DNR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C THR 168 A THR 287 1_555 A N TPO 169 A TPO 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 A C TPO 169 A TPO 288 1_555 A N LEU 170 A LEU 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
metalc ? metalc1 A OE1 GLU 62 A GLU 181 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? 
metalc ? metalc2 A OD1 ASN 142 A ASN 261 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? 
metalc ? metalc3 A OD2 ASP 155 A ASP 274 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
metalc ? metalc4 B MG MG . A MG 401 1_555 D O2B ATP . A ATP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.927 ? 
metalc ? metalc5 B MG MG . A MG 401 1_555 D O2A ATP . A ATP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.761 ? 
metalc ? metalc6 B MG MG . A MG 401 1_555 F O HOH . A HOH 560 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? 
metalc ? metalc7 B MG MG . A MG 401 1_555 F O HOH . A HOH 599 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? 
metalc ? metalc8 D O3G ATP . A ATP 403 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5DNR 
_atom_sites.fract_transf_matrix[1][1]    0.012276 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012276 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007279 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 401 1 MG MG . 
C 3 SO4 A 1 402 1 SO4 SO4 . 
D 4 ATP A 1 403 1 ATP ATP . 
E 2 MG A 1 404 1 MG MG . 
F 5 HOH A 1 501 93 HOH HOH . 
F 5 HOH A 2 502 49 HOH HOH . 
F 5 HOH A 3 503 95 HOH HOH . 
F 5 HOH A 4 504 44 HOH HOH . 
F 5 HOH A 5 505 32 HOH HOH . 
F 5 HOH A 6 506 63 HOH HOH . 
F 5 HOH A 7 507 50 HOH HOH . 
F 5 HOH A 8 508 31 HOH HOH . 
F 5 HOH A 9 509 120 HOH HOH . 
F 5 HOH A 10 510 92 HOH HOH . 
F 5 HOH A 11 511 13 HOH HOH . 
F 5 HOH A 12 512 34 HOH HOH . 
F 5 HOH A 13 513 33 HOH HOH . 
F 5 HOH A 14 514 103 HOH HOH . 
F 5 HOH A 15 515 40 HOH HOH . 
F 5 HOH A 16 516 69 HOH HOH . 
F 5 HOH A 17 517 91 HOH HOH . 
F 5 HOH A 18 518 47 HOH HOH . 
F 5 HOH A 19 519 97 HOH HOH . 
F 5 HOH A 20 520 104 HOH HOH . 
F 5 HOH A 21 521 111 HOH HOH . 
F 5 HOH A 22 522 118 HOH HOH . 
F 5 HOH A 23 523 7 HOH HOH . 
F 5 HOH A 24 524 96 HOH HOH . 
F 5 HOH A 25 525 1 HOH HOH . 
F 5 HOH A 26 526 65 HOH HOH . 
F 5 HOH A 27 527 15 HOH HOH . 
F 5 HOH A 28 528 19 HOH HOH . 
F 5 HOH A 29 529 90 HOH HOH . 
F 5 HOH A 30 530 115 HOH HOH . 
F 5 HOH A 31 531 80 HOH HOH . 
F 5 HOH A 32 532 94 HOH HOH . 
F 5 HOH A 33 533 27 HOH HOH . 
F 5 HOH A 34 534 2 HOH HOH . 
F 5 HOH A 35 535 20 HOH HOH . 
F 5 HOH A 36 536 16 HOH HOH . 
F 5 HOH A 37 537 46 HOH HOH . 
F 5 HOH A 38 538 59 HOH HOH . 
F 5 HOH A 39 539 51 HOH HOH . 
F 5 HOH A 40 540 53 HOH HOH . 
F 5 HOH A 41 541 10 HOH HOH . 
F 5 HOH A 42 542 24 HOH HOH . 
F 5 HOH A 43 543 25 HOH HOH . 
F 5 HOH A 44 544 41 HOH HOH . 
F 5 HOH A 45 545 82 HOH HOH . 
F 5 HOH A 46 546 99 HOH HOH . 
F 5 HOH A 47 547 61 HOH HOH . 
F 5 HOH A 48 548 57 HOH HOH . 
F 5 HOH A 49 549 60 HOH HOH . 
F 5 HOH A 50 550 76 HOH HOH . 
F 5 HOH A 51 551 48 HOH HOH . 
F 5 HOH A 52 552 21 HOH HOH . 
F 5 HOH A 53 553 3 HOH HOH . 
F 5 HOH A 54 554 87 HOH HOH . 
F 5 HOH A 55 555 5 HOH HOH . 
F 5 HOH A 56 556 6 HOH HOH . 
F 5 HOH A 57 557 12 HOH HOH . 
F 5 HOH A 58 558 18 HOH HOH . 
F 5 HOH A 59 559 42 HOH HOH . 
F 5 HOH A 60 560 107 HOH HOH . 
F 5 HOH A 61 561 55 HOH HOH . 
F 5 HOH A 62 562 17 HOH HOH . 
F 5 HOH A 63 563 8 HOH HOH . 
F 5 HOH A 64 564 66 HOH HOH . 
F 5 HOH A 65 565 114 HOH HOH . 
F 5 HOH A 66 566 35 HOH HOH . 
F 5 HOH A 67 567 22 HOH HOH . 
F 5 HOH A 68 568 72 HOH HOH . 
F 5 HOH A 69 569 52 HOH HOH . 
F 5 HOH A 70 570 78 HOH HOH . 
F 5 HOH A 71 571 117 HOH HOH . 
F 5 HOH A 72 572 62 HOH HOH . 
F 5 HOH A 73 573 4 HOH HOH . 
F 5 HOH A 74 574 113 HOH HOH . 
F 5 HOH A 75 575 28 HOH HOH . 
F 5 HOH A 76 576 37 HOH HOH . 
F 5 HOH A 77 577 102 HOH HOH . 
F 5 HOH A 78 578 11 HOH HOH . 
F 5 HOH A 79 579 26 HOH HOH . 
F 5 HOH A 80 580 56 HOH HOH . 
F 5 HOH A 81 581 43 HOH HOH . 
F 5 HOH A 82 582 116 HOH HOH . 
F 5 HOH A 83 583 100 HOH HOH . 
F 5 HOH A 84 584 58 HOH HOH . 
F 5 HOH A 85 585 101 HOH HOH . 
F 5 HOH A 86 586 109 HOH HOH . 
F 5 HOH A 87 587 105 HOH HOH . 
F 5 HOH A 88 588 38 HOH HOH . 
F 5 HOH A 89 589 81 HOH HOH . 
F 5 HOH A 90 590 36 HOH HOH . 
F 5 HOH A 91 591 71 HOH HOH . 
F 5 HOH A 92 592 9 HOH HOH . 
F 5 HOH A 93 593 108 HOH HOH . 
F 5 HOH A 94 594 23 HOH HOH . 
F 5 HOH A 95 595 54 HOH HOH . 
F 5 HOH A 96 596 29 HOH HOH . 
F 5 HOH A 97 597 77 HOH HOH . 
F 5 HOH A 98 598 30 HOH HOH . 
F 5 HOH A 99 599 106 HOH HOH . 
F 5 HOH A 100 600 73 HOH HOH . 
F 5 HOH A 101 601 84 HOH HOH . 
F 5 HOH A 102 602 83 HOH HOH . 
F 5 HOH A 103 603 39 HOH HOH . 
F 5 HOH A 104 604 89 HOH HOH . 
F 5 HOH A 105 605 88 HOH HOH . 
F 5 HOH A 106 606 110 HOH HOH . 
F 5 HOH A 107 607 75 HOH HOH . 
F 5 HOH A 108 608 67 HOH HOH . 
F 5 HOH A 109 609 112 HOH HOH . 
F 5 HOH A 110 610 119 HOH HOH . 
F 5 HOH A 111 611 68 HOH HOH . 
F 5 HOH A 112 612 86 HOH HOH . 
F 5 HOH A 113 613 14 HOH HOH . 
F 5 HOH A 114 614 79 HOH HOH . 
F 5 HOH A 115 615 85 HOH HOH . 
F 5 HOH A 116 616 98 HOH HOH . 
F 5 HOH A 117 617 64 HOH HOH . 
F 5 HOH A 118 618 74 HOH HOH . 
F 5 HOH A 119 619 45 HOH HOH . 
F 5 HOH A 120 620 70 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               28.825 
_atom_site.Cartn_y               84.176 
_atom_site.Cartn_z               2.404 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        30 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           404 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           220 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#