data_5DNU
#
_model_server_result.job_id            iFdyPCICnXc7r276MoODgw 
_model_server_result.datetime_utc      '2024-11-28 07:19:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5dnu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"S","auth_seq_id":318}' 
#
_entry.id    5DNU 
#
_exptl.entry_id    5DNU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5DNU 
_cell.length_a            75.757 
_cell.length_b            75.757 
_cell.length_c            181.266 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5DNU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 O N N 
? 5 P N N 
? 5 Q N N 
? 5 R N N 
? 5 S N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O PHE 69 A PHE 64 1_555 N NA NA . A NA 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.86 ? 
metalc ? metalc2 A OG SER 73 A SER 68 1_555 N NA NA . A NA 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.993 ? 
metalc ? metalc3 A OE2 GLU 88 A GLU 83 1_555 M NA NA . A NA 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? 
metalc ? metalc4 A OD1 ASP 272 A ASP 267 1_555 L NA NA . A NA 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? 
metalc ? metalc5 C O2 FMT . A FMT 302 1_555 L NA NA . A NA 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? 
metalc ? metalc6 M NA NA . A NA 312 1_555 Q O2 EDO . A EDO 316 12_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.743 ? 
metalc ? metalc7 N NA NA . A NA 313 1_555 U O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 98 n n 
C1 C2 EDO sing 99 n n 
C1 H11 EDO sing 100 n n 
C1 H12 EDO sing 101 n n 
O1 HO1 EDO sing 102 n n 
C2 O2 EDO sing 103 n n 
C2 H21 EDO sing 104 n n 
C2 H22 EDO sing 105 n n 
O2 HO2 EDO sing 106 n n 
#
_atom_sites.entry_id                     5DNU 
_atom_sites.fract_transf_matrix[1][1]    0.0132 
_atom_sites.fract_transf_matrix[1][2]    0.007621 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015242 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005517 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 KKN A 1 301 1 KKN KKN . 
C 3 FMT A 1 302 1 FMT FMT . 
D 3 FMT A 1 303 2 FMT FMT . 
E 3 FMT A 1 304 7 FMT FMT . 
F 3 FMT A 1 305 8 FMT FMT . 
G 3 FMT A 1 306 9 FMT FMT . 
H 3 FMT A 1 307 11 FMT FMT . 
I 3 FMT A 1 308 13 FMT FMT . 
J 3 FMT A 1 309 14 FMT FMT . 
K 3 FMT A 1 310 17 FMT FMT . 
L 4 NA A 1 311 2 NA NA . 
M 4 NA A 1 312 3 NA NA . 
N 4 NA A 1 313 5 NA NA . 
O 5 EDO A 1 314 1 EDO EDO . 
P 5 EDO A 1 315 2 EDO EDO . 
Q 5 EDO A 1 316 3 EDO EDO . 
R 5 EDO A 1 317 4 EDO EDO . 
S 5 EDO A 1 318 6 EDO EDO . 
T 6 BEZ A 1 319 1 BEZ BEZ . 
U 7 HOH A 1 401 181 HOH HOH . 
U 7 HOH A 2 402 184 HOH HOH . 
U 7 HOH A 3 403 180 HOH HOH . 
U 7 HOH A 4 404 185 HOH HOH . 
U 7 HOH A 5 405 159 HOH HOH . 
U 7 HOH A 6 406 252 HOH HOH . 
U 7 HOH A 7 407 205 HOH HOH . 
U 7 HOH A 8 408 64 HOH HOH . 
U 7 HOH A 9 409 217 HOH HOH . 
U 7 HOH A 10 410 142 HOH HOH . 
U 7 HOH A 11 411 189 HOH HOH . 
U 7 HOH A 12 412 135 HOH HOH . 
U 7 HOH A 13 413 92 HOH HOH . 
U 7 HOH A 14 414 240 HOH HOH . 
U 7 HOH A 15 415 128 HOH HOH . 
U 7 HOH A 16 416 153 HOH HOH . 
U 7 HOH A 17 417 71 HOH HOH . 
U 7 HOH A 18 418 130 HOH HOH . 
U 7 HOH A 19 419 101 HOH HOH . 
U 7 HOH A 20 420 143 HOH HOH . 
U 7 HOH A 21 421 148 HOH HOH . 
U 7 HOH A 22 422 239 HOH HOH . 
U 7 HOH A 23 423 94 HOH HOH . 
U 7 HOH A 24 424 36 HOH HOH . 
U 7 HOH A 25 425 182 HOH HOH . 
U 7 HOH A 26 426 247 HOH HOH . 
U 7 HOH A 27 427 79 HOH HOH . 
U 7 HOH A 28 428 45 HOH HOH . 
U 7 HOH A 29 429 52 HOH HOH . 
U 7 HOH A 30 430 22 HOH HOH . 
U 7 HOH A 31 431 234 HOH HOH . 
U 7 HOH A 32 432 208 HOH HOH . 
U 7 HOH A 33 433 98 HOH HOH . 
U 7 HOH A 34 434 113 HOH HOH . 
U 7 HOH A 35 435 34 HOH HOH . 
U 7 HOH A 36 436 14 HOH HOH . 
U 7 HOH A 37 437 238 HOH HOH . 
U 7 HOH A 38 438 76 HOH HOH . 
U 7 HOH A 39 439 6 HOH HOH . 
U 7 HOH A 40 440 7 HOH HOH . 
U 7 HOH A 41 441 80 HOH HOH . 
U 7 HOH A 42 442 11 HOH HOH . 
U 7 HOH A 43 443 105 HOH HOH . 
U 7 HOH A 44 444 4 HOH HOH . 
U 7 HOH A 45 445 249 HOH HOH . 
U 7 HOH A 46 446 23 HOH HOH . 
U 7 HOH A 47 447 77 HOH HOH . 
U 7 HOH A 48 448 100 HOH HOH . 
U 7 HOH A 49 449 41 HOH HOH . 
U 7 HOH A 50 450 207 HOH HOH . 
U 7 HOH A 51 451 151 HOH HOH . 
U 7 HOH A 52 452 38 HOH HOH . 
U 7 HOH A 53 453 122 HOH HOH . 
U 7 HOH A 54 454 195 HOH HOH . 
U 7 HOH A 55 455 44 HOH HOH . 
U 7 HOH A 56 456 146 HOH HOH . 
U 7 HOH A 57 457 74 HOH HOH . 
U 7 HOH A 58 458 19 HOH HOH . 
U 7 HOH A 59 459 35 HOH HOH . 
U 7 HOH A 60 460 72 HOH HOH . 
U 7 HOH A 61 461 103 HOH HOH . 
U 7 HOH A 62 462 144 HOH HOH . 
U 7 HOH A 63 463 24 HOH HOH . 
U 7 HOH A 64 464 48 HOH HOH . 
U 7 HOH A 65 465 235 HOH HOH . 
U 7 HOH A 66 466 8 HOH HOH . 
U 7 HOH A 67 467 118 HOH HOH . 
U 7 HOH A 68 468 29 HOH HOH . 
U 7 HOH A 69 469 32 HOH HOH . 
U 7 HOH A 70 470 9 HOH HOH . 
U 7 HOH A 71 471 138 HOH HOH . 
U 7 HOH A 72 472 187 HOH HOH . 
U 7 HOH A 73 473 70 HOH HOH . 
U 7 HOH A 74 474 200 HOH HOH . 
U 7 HOH A 75 475 215 HOH HOH . 
U 7 HOH A 76 476 25 HOH HOH . 
U 7 HOH A 77 477 15 HOH HOH . 
U 7 HOH A 78 478 26 HOH HOH . 
U 7 HOH A 79 479 53 HOH HOH . 
U 7 HOH A 80 480 13 HOH HOH . 
U 7 HOH A 81 481 3 HOH HOH . 
U 7 HOH A 82 482 49 HOH HOH . 
U 7 HOH A 83 483 51 HOH HOH . 
U 7 HOH A 84 484 18 HOH HOH . 
U 7 HOH A 85 485 124 HOH HOH . 
U 7 HOH A 86 486 73 HOH HOH . 
U 7 HOH A 87 487 62 HOH HOH . 
U 7 HOH A 88 488 61 HOH HOH . 
U 7 HOH A 89 489 199 HOH HOH . 
U 7 HOH A 90 490 141 HOH HOH . 
U 7 HOH A 91 491 241 HOH HOH . 
U 7 HOH A 92 492 17 HOH HOH . 
U 7 HOH A 93 493 191 HOH HOH . 
U 7 HOH A 94 494 10 HOH HOH . 
U 7 HOH A 95 495 121 HOH HOH . 
U 7 HOH A 96 496 136 HOH HOH . 
U 7 HOH A 97 497 134 HOH HOH . 
U 7 HOH A 98 498 232 HOH HOH . 
U 7 HOH A 99 499 30 HOH HOH . 
U 7 HOH A 100 500 220 HOH HOH . 
U 7 HOH A 101 501 47 HOH HOH . 
U 7 HOH A 102 502 129 HOH HOH . 
U 7 HOH A 103 503 55 HOH HOH . 
U 7 HOH A 104 504 2 HOH HOH . 
U 7 HOH A 105 505 33 HOH HOH . 
U 7 HOH A 106 506 221 HOH HOH . 
U 7 HOH A 107 507 230 HOH HOH . 
U 7 HOH A 108 508 88 HOH HOH . 
U 7 HOH A 109 509 5 HOH HOH . 
U 7 HOH A 110 510 109 HOH HOH . 
U 7 HOH A 111 511 21 HOH HOH . 
U 7 HOH A 112 512 81 HOH HOH . 
U 7 HOH A 113 513 223 HOH HOH . 
U 7 HOH A 114 514 198 HOH HOH . 
U 7 HOH A 115 515 108 HOH HOH . 
U 7 HOH A 116 516 112 HOH HOH . 
U 7 HOH A 117 517 31 HOH HOH . 
U 7 HOH A 118 518 178 HOH HOH . 
U 7 HOH A 119 519 63 HOH HOH . 
U 7 HOH A 120 520 95 HOH HOH . 
U 7 HOH A 121 521 37 HOH HOH . 
U 7 HOH A 122 522 68 HOH HOH . 
U 7 HOH A 123 523 231 HOH HOH . 
U 7 HOH A 124 524 75 HOH HOH . 
U 7 HOH A 125 525 114 HOH HOH . 
U 7 HOH A 126 526 27 HOH HOH . 
U 7 HOH A 127 527 133 HOH HOH . 
U 7 HOH A 128 528 186 HOH HOH . 
U 7 HOH A 129 529 78 HOH HOH . 
U 7 HOH A 130 530 40 HOH HOH . 
U 7 HOH A 131 531 56 HOH HOH . 
U 7 HOH A 132 532 132 HOH HOH . 
U 7 HOH A 133 533 42 HOH HOH . 
U 7 HOH A 134 534 237 HOH HOH . 
U 7 HOH A 135 535 126 HOH HOH . 
U 7 HOH A 136 536 131 HOH HOH . 
U 7 HOH A 137 537 50 HOH HOH . 
U 7 HOH A 138 538 87 HOH HOH . 
U 7 HOH A 139 539 58 HOH HOH . 
U 7 HOH A 140 540 145 HOH HOH . 
U 7 HOH A 141 541 196 HOH HOH . 
U 7 HOH A 142 542 192 HOH HOH . 
U 7 HOH A 143 543 28 HOH HOH . 
U 7 HOH A 144 544 202 HOH HOH . 
U 7 HOH A 145 545 116 HOH HOH . 
U 7 HOH A 146 546 154 HOH HOH . 
U 7 HOH A 147 547 165 HOH HOH . 
U 7 HOH A 148 548 219 HOH HOH . 
U 7 HOH A 149 549 65 HOH HOH . 
U 7 HOH A 150 550 43 HOH HOH . 
U 7 HOH A 151 551 99 HOH HOH . 
U 7 HOH A 152 552 206 HOH HOH . 
U 7 HOH A 153 553 179 HOH HOH . 
U 7 HOH A 154 554 246 HOH HOH . 
U 7 HOH A 155 555 67 HOH HOH . 
U 7 HOH A 156 556 226 HOH HOH . 
U 7 HOH A 157 557 222 HOH HOH . 
U 7 HOH A 158 558 86 HOH HOH . 
U 7 HOH A 159 559 120 HOH HOH . 
U 7 HOH A 160 560 156 HOH HOH . 
U 7 HOH A 161 561 90 HOH HOH . 
U 7 HOH A 162 562 107 HOH HOH . 
U 7 HOH A 163 563 46 HOH HOH . 
U 7 HOH A 164 564 203 HOH HOH . 
U 7 HOH A 165 565 125 HOH HOH . 
U 7 HOH A 166 566 204 HOH HOH . 
U 7 HOH A 167 567 123 HOH HOH . 
U 7 HOH A 168 568 69 HOH HOH . 
U 7 HOH A 169 569 224 HOH HOH . 
U 7 HOH A 170 570 106 HOH HOH . 
U 7 HOH A 171 571 193 HOH HOH . 
U 7 HOH A 172 572 242 HOH HOH . 
U 7 HOH A 173 573 84 HOH HOH . 
U 7 HOH A 174 574 212 HOH HOH . 
U 7 HOH A 175 575 218 HOH HOH . 
U 7 HOH A 176 576 160 HOH HOH . 
U 7 HOH A 177 577 201 HOH HOH . 
U 7 HOH A 178 578 236 HOH HOH . 
U 7 HOH A 179 579 250 HOH HOH . 
U 7 HOH A 180 580 39 HOH HOH . 
U 7 HOH A 181 581 166 HOH HOH . 
U 7 HOH A 182 582 140 HOH HOH . 
U 7 HOH A 183 583 229 HOH HOH . 
U 7 HOH A 184 584 66 HOH HOH . 
U 7 HOH A 185 585 93 HOH HOH . 
U 7 HOH A 186 586 190 HOH HOH . 
U 7 HOH A 187 587 244 HOH HOH . 
U 7 HOH A 188 588 228 HOH HOH . 
U 7 HOH A 189 589 227 HOH HOH . 
U 7 HOH A 190 590 127 HOH HOH . 
U 7 HOH A 191 591 197 HOH HOH . 
U 7 HOH A 192 592 188 HOH HOH . 
U 7 HOH A 193 593 115 HOH HOH . 
U 7 HOH A 194 594 152 HOH HOH . 
U 7 HOH A 195 595 213 HOH HOH . 
U 7 HOH A 196 596 253 HOH HOH . 
U 7 HOH A 197 597 150 HOH HOH . 
U 7 HOH A 198 598 248 HOH HOH . 
U 7 HOH A 199 599 83 HOH HOH . 
U 7 HOH A 200 600 209 HOH HOH . 
U 7 HOH A 201 601 211 HOH HOH . 
U 7 HOH A 202 602 245 HOH HOH . 
U 7 HOH A 203 603 214 HOH HOH . 
U 7 HOH A 204 604 251 HOH HOH . 
U 7 HOH A 205 605 216 HOH HOH . 
U 7 HOH A 206 606 147 HOH HOH . 
U 7 HOH A 207 607 210 HOH HOH . 
U 7 HOH A 208 608 243 HOH HOH . 
U 7 HOH A 209 609 194 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . S 5 30.283 -21.008 0.001 1 25.89 ? C1 EDO 318 A 1 
HETATM 2 O O1 EDO . . . S 5 29.758 -19.806 -0.541 1 24.13 ? O1 EDO 318 A 1 
HETATM 3 C C2 EDO . . . S 5 31.814 -21.033 0.027 1 26.65 ? C2 EDO 318 A 1 
HETATM 4 O O2 EDO . . . S 5 32.278 -20.313 1.174 1 24.61 ? O2 EDO 318 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           4 
#